Frontiers in Bioinformatics | Protein Bioinformatics

Technology and Code

Published on 06 Jun 2025

DeepPredict: a state-of-the-art web server for protein secondary structure and relative solvent accessibility prediction

in Protein Bioinformatics

Wafa Alanazi
Di Meng
Gianluca Pollastri

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1607402

655 views

Original Research

Accepted on 30 May 2025

Design of cross-reactive antigens with machine learning and high-throughput experimental evaluation

in Protein Bioinformatics

Chelsy Chesterman
Thomas Desautels
Luz-Jeannette Sierra
Kathryn Arrildt
Adam Zemla
Edmond Lau
Shivshankar Sundaram
Jason Laliberte
Lynn Chen
Aaron Ruby

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1580967

192 views

Original Research

Accepted on 22 May 2025

IN-SILICO MOLECULAR ANALYSIS AND BLOCKING OF THE VIRAL G PROTEIN OF NIPAH VIRUS INTERACTING WITH EPHRIN B2 AND B3 RECEPTOR BY USING PEPTIDE MASS FINGERPRINTING

in Protein Bioinformatics

Ayesha Sajjad
ihteshamul Haq
Rabia Syed
Faheem Anwar
Muhammad Hamza
Faisal Nouroz
Tehmina Kiani

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1526566

194 views

Original Research

Published on 14 Apr 2025

Using AlphaFold-Multimer to study novel protein-protein interactions of predation essential hypothetical proteins in Bdellovibrio

in Protein Bioinformatics

Ibukun John Abulude
Isabel Cristina Rodríguez Luna
Alejandro Sánchez Varela
Andrew Camilli
Daniel E. Kadouri
Xianwu Guo

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1566486

1,806 views

Original Research

Published on 25 Mar 2025

Molecular dynamic simulations to assess the structural variability of ClpV from Enterobacter cloacae

in Protein Bioinformatics

Tehrim Motiwala
Babalwa Nyide
Thandeka Khoza

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1498916

738 views

Mini Review

Published on 03 Feb 2025

Machine learning approaches for predicting protein-ligand binding sites from sequence data

in Protein Bioinformatics

Orhun Vural
Leon Jololian

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1520382

2,560 views

Original Research

Published on 28 Jan 2025

Integrated bioinformatics analysis to explore potential therapeutic targets and drugs for small cell carcinoma of the esophagus

in Protein Bioinformatics

Maofei Zhu
Yueming Chu
Qiang Yuan
Junfeng Li
Silin Chen
Lin Li

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1495052

2,041 views

Original Research

Published on 18 Oct 2024

DCMA: faster protein backbone dihedral angle prediction using a dilated convolutional attention-based neural network

in Protein Bioinformatics

Buzhong Zhang
Meili Zheng
Yuzhou Zhang
Lijun Quan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1477909

959 views

Review

Published on 04 Sep 2024

PhIP-Seq: methods, applications and challenges

in Protein Bioinformatics

Ziru Huang
Samarappuli Mudiyanselage Savini Gunarathne
Wenwen Liu
Yuwei Zhou
Yuqing Jiang
Shiqi Li
Jian Huang

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1424202

7,878 views

Original Research

Published on 25 Jul 2024

A hybrid approach for predicting transcription factors

in Protein Bioinformatics

Sumeet Patiyal
Palak Tiwari
Mohit Ghai
Aman Dhapola
Anjali Dhall
Gajendra P. S. Raghava

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1425419

1,964 views
2 citations

Perspective

Published on 20 Jun 2024

Bioinformatics proficiency among African students

in Protein Bioinformatics

Ashraf Akintayo Akintola
Abdullahi Tunde Aborode
Muhammed Taofiq Hamza
Augustine Amakiri
Benjamin Moore
Suliat Abdulai
Oluyinka Ajibola Iyiola
Lateef Adegboyega Sulaimon
Effiong Effiong
Adedeji Ogunyemi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1328714

2,782 views
1 citation

Original Research

Published on 24 May 2024

Human cytokine and coronavirus nucleocapsid protein interactivity using large-scale virtual screens

in Protein Bioinformatics

Phillip J. Tomezsko
Colby T. Ford
Avery E. Meyer
Adam M. Michaleas
Rafael Jaimes

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1397968

2,669 views
10 citations

Original Research

Published on 23 Feb 2024

Computational identification of antibody-binding epitopes from mimotope datasets

in Protein Bioinformatics

Rang Li
Sabrina Wilderotter
Madison Stoddard
Debra Van Egeren
Arijit Chakravarty
Diane Joseph-McCarthy

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1295972

3,583 views

Technology and Code

Published on 09 Feb 2024

MARTin—an open-source platform for microarray analysis

in Protein Bioinformatics

Kai O. Kreissner
Benjamin Faller
Ivan Talucci
Hans M. Maric

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1329062

2,921 views
4 citations

Methods

Published on 31 Jan 2024

Making bioinformatics training FAIR: the EMBL-EBI training portal

in Protein Bioinformatics

A. L. Swan
A. Broadbent
P. Singh Gaur
A. Mishra
K. Gurwitz
A. Mithani
S. L. Morgan
G. Malhotra
C. Brooksbank

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1347168

2,267 views
1 citation

Methods

Published on 26 Jan 2024

AlignScape, displaying sequence similarity using self-organizing maps

in Protein Bioinformatics

Isaac Filella-Merce
Vincent Mallet
Eric Durand
Michael Nilges
Guillaume Bouvier
Riccardo Pellarin

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1321508

2,877 views