Review
Published on 16 Dec 2025
Bioengineering hybrid artificial life
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1676359
- 697 views
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78 articles
articles
Original Research
Published on 05 Dec 2025
Uncovering human kinase substrates in nipah proteome
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1678189
- 1,358 views
Original Research
Published on 28 Nov 2025
Beyond Tanimoto: a learned bioactivity similarity index enhances ligand discovery
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1695353
- 875 views
Review
Accepted on 27 Nov 2025
Advances in Protein-Protein Interaction Prediction: A Deep Learning Perspective
in Protein Bioinformatics
Frontiers in Bioinformatics
- 298 views
Technology and Code
Published on 25 Nov 2025
Bacteriocin prediction through cross-validation-based and hypergraph-based feature evaluation approaches
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1694009
- 848 views
Original Research
Published on 18 Nov 2025
Role of histone-lysine N-methyltransferase 2D (KMT2D) in MEK-ERK signaling-mediated epigenetic regulation: a phosphoproteomics perspective
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1683469
- 1,261 views
Original Research
Published on 05 Nov 2025
ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1684042
- 1,152 views
Editorial
Published on 31 Oct 2025
Editorial: Computational protein function prediction based on sequence and/or structural data
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1705252
- 1,215 views
Original Research
Published on 24 Oct 2025
Unraveling the molecular basis of snake venom nerve growth factor: human TrkA recognition through molecular dynamics simulation and comparison with human nerve growth factor
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1674791
- 980 views
Original Research
Published on 20 Oct 2025
Fish isoallergens and variants: database compilation, in silico allergenicity prediction challenges, and epitope-based threshold optimization
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1669237
- 1,633 views
Technology and Code
Published on 04 Sep 2025
Protein cleaver: an interactive web interface for in silico prediction and systematic annotation of protein digestion-derived peptides
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1576317
- 2,991 views
Original Research
Published on 01 Sep 2025
COCαDA - a fast and scalable algorithm for interatomic contact detection in proteins using Cα distance matrices
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1630078
- 1,563 views
- 2 citations
Original Research
Published on 18 Jul 2025
IDRdecoder: a machine learning approach for rational drug discovery toward intrinsically disordered regions
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1627836
- 2,594 views
Original Research
Published on 17 Jul 2025
Understanding the selectivity in silico of colistin and daptomycin toward gram-negative and gram-positive bacteria, respectively, from the interaction with membrane phospholipids
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1569480
- 1,883 views
Original Research
Published on 16 Jul 2025
Design of cross-reactive antigens with machine learning and high-throughput experimental evaluation
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1580967
- 2,569 views
Original Research
Published on 25 Jun 2025
In-silico molecular analysis and blocking of the viral G protein of Nipah virus interacting with ephrin B2 and B3 receptor by using peptide mass fingerprinting
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1526566
- 2,357 views
- 1 citation
Technology and Code
Published on 06 Jun 2025
DeepPredict: a state-of-the-art web server for protein secondary structure and relative solvent accessibility prediction
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1607402
- 2,811 views
- 1 citation
Original Research
Published on 14 Apr 2025
Using AlphaFold-Multimer to study novel protein-protein interactions of predation essential hypothetical proteins in Bdellovibrio
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1566486
- 5,754 views
- 4 citations
Original Research
Published on 25 Mar 2025
Molecular dynamic simulations to assess the structural variability of ClpV from Enterobacter cloacae
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1498916
- 1,826 views
- 2 citations
Mini Review
Published on 03 Feb 2025
Machine learning approaches for predicting protein-ligand binding sites from sequence data
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1520382
- 7,064 views
- 3 citations
Original Research
Published on 28 Jan 2025
Integrated bioinformatics analysis to explore potential therapeutic targets and drugs for small cell carcinoma of the esophagus
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1495052
- 3,969 views
- 4 citations
Original Research
Published on 18 Oct 2024
DCMA: faster protein backbone dihedral angle prediction using a dilated convolutional attention-based neural network
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2024.1477909
- 1,831 views
Review
Published on 04 Sep 2024
PhIP-Seq: methods, applications and challenges
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2024.1424202
- 14,112 views
- 3 citations
Original Research
Published on 25 Jul 2024
A hybrid approach for predicting transcription factors
in Protein Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2024.1425419
- 3,189 views
- 3 citations