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ORIGINAL RESEARCH article

Front. Earth Sci., 05 November 2025

Sec. Georeservoirs

Volume 13 - 2025 | https://doi.org/10.3389/feart.2025.1696607

A total organic carbon prediction algorithm for heterogeneous shale based on interpretable neural network: a case study of Qiongzhusi Formation shale in the Sichuan Basin

  • 1Petroleum Institute, China University of Petroleum-Beijing at Karamay, Karamay, China
  • 2Sinopec Matrix Corporation, Qingdao, China

Total Organic Carbon (TOC) is a fundamental parameter for evaluating source rock quality, yet the strong heterogeneity of the Qiongzhusi Formation shale reservoir in the Sichuan Basin severely limits the applicability of conventional TOC prediction models. To address this challenge, this study proposes a novel TOC prediction algorithm (INN-BIC) that integrates an Interpretable Neural Network (INN) with the Bayesian Information Criterion (BIC). By employing feature decoupling and a dynamic polynomial degree selection mechanism, the method enhances both prediction accuracy and model interpretability in complex geological settings. The model successfully quantifies the contribution of well-log parameters such as uranium content, natural gamma ray, and deep/shallow resistivity to TOC, and accurately captures TOC variations in stratigraphic transition zones. Experimental results demonstrate that the INN-BIC model significantly outperforms traditional methods, improving the R2 score by 79% and 25% compared to Backpropagation Neural Network (BPNN) and Support Vector Machine (SVM) models, respectively, and achieving a 65% enhancement over the original INN model. This verifies the model's effectiveness and reliability in strongly heterogeneous environments, supporting its practical application in shale gas sweet spot evaluation and efficient development.

1 Introduction

Total Organic Carbon (TOC) is a fundamental parameter for assessing the quality and hydrocarbon generation potential of source rocks, and its accurate prediction is crucial for the identification of shale gas sweet spots. The Early Cambrian Qiongzhusi Formation in the Sichuan Basin represents a significant target for shale gas exploration in China. However, its strong reservoir heterogeneity poses significant challenges for the accurate prediction of TOC content. Although core analysis offers high accuracy, its high cost and discontinuous nature make it inadequate for comprehensive exploration needs. Consequently, developing a high-precision and interpretable TOC prediction method adapted to strong heterogeneity is of paramount theoretical and practical value for shale gas sweet spot prediction and efficient development.

Currently, the prediction methods for shale reservoir TOC developed by scholars at home and abroad can be classified into three main research systems: traditional prediction methods based on empirical formulas, regression methods based on multivariate statistics, and intelligent algorithms based on neural networks (Table 1) (Aziz et al., 2020). Firstly, the traditional prediction methods based on empirical formulas primarily establish empirical relationships between conventional logging parameters and TOC using formation physical properties. The pioneering work began with the Schmoker method proposed by Schmoker (1979), which used regression analysis of density logs to estimate organic matter content and was subsequently refined (Schmoker, 1981; Schmoker and Hester, 1983). Subsequently, Passey et al. (1990) introduced the ΔLogR method utilizing resistivity and porosity logs, which has become a classic technique for TOC prediction due to its operational simplicity and strong applicability. In recent years, numerous scholars have optimized and improved the ΔLogR method for its application in various basins worldwide, primarily involving the use of variable slopes, baseline adjustments, and replacing the maturity parameter LOM with thermal indicators such as Tmax or Ro (Li et al., 2020; Wood, 2020; Zheng et al., 2021; Mulashani et al., 2021; Zhang et al., 2022). Secondly, the multiple linear regression methods employ trial-and-error to select logging parameters significantly correlated with TOC and simulate the mathematical relationship between multiple logging parameters and TOC through linear regression. By considering the influence of more factors, their prediction accuracy is significantly improved compared to empirical formula methods (Zhang F et al., 2023; Hui et al., 2023; Feng et al., 2023; Zhang H et al., 2023; Zhang et al., 2025). For instance, Zhang et al. (2025) demonstrated that a multiple linear regression prediction model could effectively predict TOC content in marine-continental transitional shales, achieving accuracy comparable to the BP model, through comparative studies with other models. The third category includes artificial intelligence methods, such as neural network algorithms, which build complex nonlinear models that better capture the underlying relationships in the data and improve prediction accuracy. These methods have demonstrated superior performance, especially in handling large-scale and high-dimensional data, effectively enhancing prediction precision (Nyakilla et al., 2022; Gordon et al., 2022; Liu et al., 2023; Lai et al., 2024; Ehsan et al., 2025a). For example, Lai et al. (2024) used principal component analysis to preprocess well log and TOC data, establishing a TOC prediction model based on BP Artificial Neural Network (BPANN) and Gradient Boosting Decision Trees (XGBoost). Their research showed that the XGBoost model offers higher calculation accuracy.

Table 1
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Table 1. Summary of the TOC prediction methods.

However, existing TOC prediction methods perform poorly in the strongly heterogeneous shale of the Qiongzhusi Formation, primarily due to the following reasons: (1) Traditional TOC prediction methods, while practical for evaluating homogeneous lithologies and their explicit expressions that visually reflect the relationship between well log parameters and TOC, fail to predict TOC values accurately in layers with abrupt lithological changes, resulting in lower prediction accuracy (Maroufi and Zahmatkesh, 2023). (2) While neural network algorithms offer better prediction performance and adaptability, they require a large amount of measured data as support and suffer from the “black-box effect,” making it difficult to identify the specific mathematical relationships between well log parameters and TOC.

To address the above challenges, this study focuses on the shelf shale of the Qiongzhusi Formation in the Jingyan-Qianwei area of the Sichuan Basin. This study systematically analyzed the geological characteristics, geochemical properties, and heterogeneity distribution of the reservoir. Based on 361 core measurement datasets and well-logging data from five key wells, key logging parameters sensitive to TOC were selected via Pearson correlation analysis. To tackle the dual issues of insufficient accuracy in strongly heterogeneous intervals and the “black-box” nature of neural networks, an Interpretable Neural Network algorithm based on the Bayesian Information Criterion was proposed. The model first decomposes the complex mapping relationship into transparent sub-networks through feature decoupling. Then, a dynamic polynomial order selection mechanism is introduced, which leverages the BIC to automatically determine the optimal polynomial order for each logging parameter, thereby adaptively characterizing their differentiated nonlinear responses within the highly heterogeneous context. This design not only enhances the prediction accuracy for TOC but also ensures model interpretability by generating mathematical expressions that are directly interpretable by geologists. Consequently, the model effectively reveals the contribution mechanisms of well-log parameters and accurately captures TOC variations across stratigraphic transition zones in the shale reservoir.

The remainder of this paper is structured as follows. Section 2 details the geological setting and heterogeneous characteristics of the Qiongzhusi Formation in the study area. Section 3 elaborates on the fundamental principles of the INN-BIC model and its implementation workflow. Section 4 presents the application of the model to key wells and compares its performance against established methods. Section 5 discusses the advantages of the proposed algorithm and suggests directions for future research. Finally, Section 6 summarizes the principal conclusions of this study.

2 The regional overview

2.1 Geological features of the research block

The Jingyan-Qianwei region is located at the southwestern edge of the Sichuan Basin, at the junction of Leshan and Zigong. Structurally, it belongs to the northwest part of the southwestern Sichuan depression and the southwestern wing of the Weiyuan structure, situated in the gentle slope structural zone to the west of the Mianyang-Changning rifting basin. The Qiongzhusi Formation in the research block is buried at depths ranging from 3,400 to 4,000 m. Its evolution is primarily controlled by the combined effects of the Tongwan and Xingkai movements, forming during the peak period of the early Cambrian rifting basin development. The sedimentary thickness exhibits significant spatial variation, with a “thin-thick-thin” trend from west to east. The stratigraphic contact relationship shows that the Qiongzhusi Formation is in parallel unconformable contact with the underlying Maidiping Formation. The overall structural form is gentle, with weak folding deformation and poorly developed fault structures (Wang et al., 2020; Zhao et al., 2022; Bian et al., 2022; Wang et al., 2023; Guo et al., 2023).

In terms of lithology, the Qiongzhusi Formation can be subdivided into three sections and 11 lithological layers, showing rhythmic interlayers of deep-water shelf-type black shale and shallow-water shelf-type silty shale (Figure 1) (Lan and Shen, 2022; Wang et al., 2023). The lower section develops organic-rich black shale with horizontal fine lamination, commonly containing pyrite nodules and dispersed pyrite. The middle to upper part gradually transitions into silty shale interbedded with calcareous lenses. The upper section is dominated by silty shale interspersed with black organic-rich shale. Overall, the formation exhibits a coarsening-upward cyclical feature, reflecting the sedimentary evolution process under a regressive environment (Wang et al., 2020; Zhao et al., 2022).

Figure 1
Geological diagram showing different facies and geological features in a region. Depicts Western and Kangdian oldlands, and Motianling and Hannan oldlands with delta facies. An intracratonic sag is present, along with shallow-water and deep-water shelves. The continental margin and passive slope are highlighted with oxygen zones near the central Guizhou uplift. The diagram includes fluvial, shoreland, delta, and shelf facies, with a color key at the bottom.

Figure 1. Sedimentary model diagram of Qiongzhusi Formation in Sichuan Basin (Guo et al., 2023).

2.2 Geochemical characteristics of shale

Organic matter abundance, kerogen type, and thermal maturity are the three fundamental geochemical indicators for evaluating the properties of source rocks (Lai et al., 2022; Yan et al., 2025). The organic geochemical analysis of the Qiongzhusi Formation shale reveals its excellent hydrocarbon generation potential. The abundance of organic matter in the rock is typically characterized by TOC, which effectively reflects the hydrocarbon generation potential (Lai et al., 2024; Guo et al., 2023). The TOC content in the research block varies widely (0.01%–3.55%), with an average of 0.49%. The shale in the research block reaches the level of a medium-abundance source rock, with a certain hydrocarbon generation potential (Wang et al., 2024).

Kerogen type analysis (Table 2) shows that the dominant microcomponent of kerogen is the humic group, accounting for an average of 76.11%, followed by the vitrinite group (23.89%), while the exinite and inertinite groups were not detected. Combining the type index (average 58.19) with rock pyrolysis parameters, the kerogen type in the research block is primarily Type II1, indicating that the organic matter mainly comes from the highly degraded products of low-grade aquatic organisms, with excellent hydrocarbon generation potential. The maturity parameters show that the vitrinite reflectance (Ro) ranges from 2.66% to 2.79%, with an average value of 2.72%, indicating that the shale in the Qiongzhusi Formation has entered the overmature stage (Ro > 2.0%). This result suggests that the shale is currently in the dry gas generation window, with its hydrocarbon generation capacity largely depleted, mainly producing dry gas. In this stage of evolution, the gas content in the shale reservoir is mainly controlled by TOC content: on one hand, TOC determines the amount of residual kerogen and methane adsorption capacity; on the other hand, the nanopores formed by the thermal evolution of organic matter provide important storage space for free gas. Therefore, precise TOC prediction is significant for identifying sweet spots.

Table 2
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Table 2. Identification of kerogen types in the research block samples.

2.3 Heterogeneity characteristics of the shale

The shale in the research block exhibits a complex and rapidly changing mineral composition, with significant vertical heterogeneity. X-ray diffraction (XRD) analysis of the whole-rock mineral composition (Figure 2) indicates that the shale in the study section is primarily composed of feldspathoid minerals (average content of 64%), followed by clay minerals (21%), with the lowest content of carbonate minerals (15%). The mineral composition shows distinct vertical differentiation, with higher clay mineral content in the upper section (up to 35%), while the lower section contains a significantly higher proportion of brittle minerals (feldspathoid + carbonate minerals), exceeding 80%. This significant variation in mineral composition leads to a complex and diverse distribution of organic matter, posing a severe challenge to accurate TOC prediction.

Figure 2
Stacked bar chart showing mineral content percentages for 29 samples. Minerals include quartz, dolomite, K-feldspar, plagioclase, pyrite, calcite, marcasite, and clay minerals, each marked by different colors. Quartz and clay minerals dominate the samples.

Figure 2. Mineral composition diagram of the Qiongzhusi formation shale in the research block.

The rapid changes in mineral composition affect TOC prediction in three main ways: First, different minerals exhibit significant differences in well log responses. For example, clay minerals usually show high gamma-ray (GR) values, while brittle minerals show low GR values. This interference reduces the correlation between conventional well logs and TOC, making TOC prediction using a single well log parameter more difficult (Lu et al., 2013). Second, organic matter enrichment has clear lithology dependence. In layers with high clay content, organic matter is mainly concentrated by adsorption, whereas in layers with high brittle mineral content, the distribution of organic matter is controlled by the development of microfractures. This difference makes TOC prediction models based on a single well log parameter unable to accurately represent the spatial distribution of organic matter. Lastly, abrupt changes in mineral composition near lithological interfaces further increase the uncertainty in TOC prediction, as seen in the JS103 well section (3,350m–3390m, Figure 8). Rapid changes in mineral composition not only interfere with well log interpretation but also cause significant deviations in predictions across lithological transition zones, adding to the complexity of model development.

3 TOC prediction model establishment

3.1 Basic principles of the interpretable neural network

The Interpretable Neural Network (INN) uses a structured network architecture design (Figure 3) to decouple the complex input-output mapping relationships into nonlinear mathematical expressions between variables, thereby enabling qualitative analysis of the contribution of individual features (Castillo, 1998; Zhang L et al., 2023). In traditional neural networks, when adjusting the connection weights of the hidden layers, all input data are typically processed together to achieve optimal prediction performance, but the correlations between inputs and outputs based on hidden information cannot be evaluated. In contrast, the INN can visualize the interaction relationships between each input feature and the target variable, thus achieving a transition from a “black-box” to a “white-box” model.

Figure 3
Diagram illustrating a feature extraction process with parameters \(X_1, X_2, X_i\) feeding into submodels. Each submodel processes features via neural network structures, producing outputs \(w_1 h_1(x_1), w_2 h_2(x_2), w_i h_i(x_i)\). The outputs are summed, forming the equation \(y_i(x_i) = \sum_{j=1}^{d} w_j h_j(x_j)\).

Figure 3. INN framework diagram.

IINN assigns each input feature an independent, simple sub-network module hjxj. The model’s final prediction output Yx is the linear weighted sum of the outputs from all sub-networks (Equation 1). This design ensures that the contribution of each feature xj can be tracked and explained individually. The sub-networks are not traditional multilayer perceptrons but are constrained to predefined functions with clear mathematical meanings; in this study, polynomial functions are used (Equation 2). This design not only ensures that each feature’s contribution can be individually tracked and explained but also guarantees that the sub-network structure is transparent and, after training, can be directly used to analyze both the linear and nonlinear impact directions of the feature.

Yx=i=1mj=1dωihjxj(1)
hixi=βj0+βj1xj+βj2xj2++βjixji+ε(2)

In the formula, ωi: the weight coefficient corresponding to the output of the sub-network. i: the highest order of the polynomial corresponding to the feature xj; βji: the coefficient to be learned within the sub-network; ε: Global error.

During end-to-end interpretable training, INN standardizes the input data so that all features are on comparable scales, ensuring the stability of training and the fairness of parameter interpretation. Standard loss functions, such as Mean Squared Error (MSE) (Equation 3), are used, and all sub-network internal parameters and the output layer’s weight coefficients are optimized simultaneously through the backpropagation algorithm and gradient descent optimization method.

Loss=1NiNyiy¯2(3)

3.2 Bayesian Information Criterion-based interpretable neural network

Despite the significant advantages of INN in model transparency, there are still some limitations. First, the original INN forces all input features to be modeled using a uniform polynomial degree (such as a fixed quadratic polynomial), making it difficult to adapt to the differences in nonlinear relationships between features in the actual data. This rigid design can lead to underfitting of high-degree nonlinear features and overfitting of low-degree nonlinear features, reducing the model’s generalization ability. Lastly, the end-to-end random initialization strategy may cause the model to fall into local optima, converging to weight combinations that are physically unreasonable and affecting model reliability.

To address these issues in the prediction of shale TOC content, this study proposes an INN-BIC algorithm based on the Bayesian Information Criterion (BIC). The model improves upon the original INN framework by introducing a dynamic polynomial modeling mechanism, i.e., by introducing the BIC criterion to automatically select the optimal polynomial degree for each geological feature, effectively solving the model rigidity problem caused by manually presetting fixed degrees in the original INN. Specifically, the algorithm independently calculates the BIC values for different polynomial degrees for each feature, autonomously selecting the degree and weight corresponding to the minimum BIC to quantify the balance between model complexity and goodness of fit (Equation 4).

BICmi=mi+1lnn+nlnk1nykiyk¯2n(4)

The INN-BIC model adopts a two-stage training optimization strategy (Figure 4). In the pre-training stage, the optimal degree and initial weights of each feature are determined based on the BIC criterion. In the fine-tuning stage, the Adam Optimizer is used for end-to-end fine-tuning, with MSE as the loss function to achieve global parameter optimization (Equation 5). This strategy ensures both the prediction accuracy of the model and the interpretability of the sub-network structure. By analyzing the weight distribution and selected degrees of each sub-network, the model can quantify the contribution of each feature to the output, providing reliable support for the model’s interpretability.

θt+1=θtηmtvt+ε(5)

In the formula, θt: all the parameters that can be trained; η: Learning rate, default is 0.05; mt, vt: respectively represent first-order and second-order moment.

Figure 4
Flowchart displaying the INN and Subnetwork Structure. The INN Structure starts with logging parameters and feature selection, proceeding through subnetworks one to N for feature contribution and summation, ending in output. The Subnetwork Structure involves initializing minimum BIC, iterating over polynomial orders, and calculating the current BIC, checking if BIC is less than the minimum. If yes, it records the optimal order and weights; otherwise, it loops back.

Figure 4. INN-BIC structure flowchart.

The robustness of the INN-BIC model is further enhanced, resulting in an innovative architecture that combines the precision of black-box models with the interpretability of white-box models. Practical applications show that this algorithm not only generates mathematical expressions that can be directly interpreted by geologists but also accurately quantifies the nonlinear contributions of each feature, providing new technical support for shale oil and gas exploration.

3.3 Data source and preprocessing

The model is constructed upon a dataset comprising 361 core samples collected from five key exploration wells (e.g., Well JY1, Well JY2, Well JS103) in the Jingyan-Qianwei area of the Sichuan Basin. The TOC content of all core samples was accurately measured using a Rock-Eval pyrolysis analyzer. Rigorous depth alignment and matching were performed to ensure that each core TOC measurement was precisely correlated with its in-situ well-logging responses.

For input parameter selection, based on prior geological knowledge and Pearson correlation analysis (Figure 5), this study identified six key well-logging curves mechanistically linked to TOC enrichment: Uranium (U), Gamma Ray (GR), Compensated Acoustic Log(AC), Deep Resistivity (RD), and Shallow Resistivity (RS). It is noteworthy that these parameters generally exhibit low linear coefficients of determination (R2) with TOC in Figure 5, which serves as direct evidence of the strong heterogeneity of the shale reservoir in the study area. The rapid vertical variation in mineral composition (as shown in Figure 2) causes the response of any single log to be co-influenced by both lithology and organic matter, preventing the establishment of a stable, global linear relationship with TOC.

Figure 5
Scatter plots (a) to (h) show correlations between Core_Toc (%) and different variables: U (ppm), GR (API), TH (ppm), DEN (g/cm³), CNL (%), AC (us/ft), Log₁₀RD (Ω.m), and LOG₁₀RS (Ω.m). Red lines indicate trend lines. Correlation coefficients (R²) vary: (a) 0.42, (b) 0.31, (c) 0.11, (d) 0.16, (e) 0.184, (f) 0.19, (g) 0.21, and (h) 0.21.

Figure 5. Correlation analysis between logging parameters and TOC. (a) U and TOC. (b) GR and TOC. (c) TH and TOC. (d) DEN and TOC. (e) CNL and TOC. (f) AC and TOC. (g) RD and TOC. (h) RS and TOC.

This observation clearly highlights the limitations of traditional linear prediction models in our study area and, concurrently, establishes the core motivation for this study: the necessity to employ an advanced algorithm capable of capturing complex nonlinear relationships. Consequently, this study introduce the Interpretable Neural Network based on the Bayesian Information Criterion (INN-BIC). This model does not rely on strong linear assumptions. Its “feature decoupling” and “dynamic order selection” mechanisms enable it to adaptively uncover the potential nonlinear associations between each parameter and TOC, ultimately achieving high prediction accuracy by integrating the complementary information from multiple parameters.

To ensure training stability and fairness, all input logging parameters were subjected to Z-score standardization to eliminate unit differences. Finally, the entire set of 361 samples was randomly split into a training set (80%, 289 samples) and a testing set (20%, 72 samples) for model construction and independent performance evaluation, respectively.

3.4 Model validation

Through the feature-decoupling architecture of the INN model, each well log parameter independently enters its corresponding interpretable sub-network for polynomial base transformations, ultimately resulting in a prediction model with explicit mathematical expressions (Equation 6):

TOC1TOC2TOCn=1U1U121U2U221UnUn20.103530.010970.00538+1LogRD1LogRD121LogRD2LogRD221LogRDnLogRDn29.60697.380581.3578+1LogRS1LogRS121LogRS2LogRS221LogRSnLogRSn210.7168.16041.51568+1AC11ACn0.46650.01061+1GR1GR12GR131GR2GR22GR231GRnGRn2GRn30.3068790.00860760.00006020.0000002+ε(6)

In the formula, n is the number of sample points; TOCn: the TOC content of the nth data point calculated, %; Un:the uranium content of the nth data point, ppm; LogRDn: the logarithm of the deep resistivity corresponding to the nth data point, ohm·m; LogRSn: the logarithm of the shallow resistivity corresponding to the nth data point, ohm·m; ACn: the acoustic interval time corresponding to the nth data point, μs/ft; GRn: the natural gamma ray corresponding to the nth data point, API; ε: the global error.

In the model expression, the relationship between different well log parameters and TOC is represented by adaptive polynomial transformations. The research results show that U and GR follow quadratic and cubic polynomial relationships, respectively. This feature corresponds to the complexity of the rock and mineral composition in the research block and the differences in organic matter adsorption capacity due to different clay minerals, revealing the intrinsic relationship between uranium and natural gamma responses and organic matter enrichment in the anoxic environment of the early Cambrian. RD and RS exhibit significant quadratic polynomial relationships with TOC, reflecting the electrical response characteristics of the lithological interface between overlying silty shale and underlying black shale in the research block. AC, in contrast, maintains a linear relationship with TOC, consistent with the brittle mineral content shown by XRD analysis, indicating the impact of the microfracture system formed by the thermal evolution of organic matter on acoustic wave propagation characteristics (Fu et al., 2025). These features have significant correlations with the rhythmic interlayer structure of “deep-water-shallow-water alternating shelf deposition” in the Qiongzhusi Formation of the research block. The INN model, through its adaptive feature selection mechanism, effectively identifies the organic matter enrichment patterns in the research block, providing a new technical approach for evaluating overmature shale gas reservoirs.

The INN-BIC model’s prediction results are shown in Figure 6. The coefficient of determination (R2) between the predicted and measured TOC values for the training, testing, and total sample sets all exceed 0.89, showing good fitting performance. This result validates the accuracy and reliability of the INN-BIC model in predicting TOC for source rocks, providing reliable technical support for subsequent research.

Figure 6
Scatter plots displaying prediction results. (a) Training set shows a linear relation with R² = 0.77, equation: y = 0.76x + 0.091, n = 314. (b) Testing set with R² = 0.84, equation: y = 0.72x + 0.085, n = 78. (c) Total sample set with R² = 0.78, equation: y = 0.75x + 0.091, n = 392. Red dots represent data points, with a trend line in each plot.

Figure 6. Analysis of INN model prediction results and measured results. (a) The prediction results of training set. (b) The prediction results of INN testing set. (c) The prediction results of INN sample set.

4 Application

To verify the prediction accuracy of the INN-BIC model, systematic validation was carried out on three key wells, JY1, JY2, and JS103 (Figure 7). Specifically, the INN-BIC model demonstrated excellent fitting performance in the three wells, with coefficients of determination (R2) reaching 0.93, 0.90, and 0.86, respectively. This clearly indicates the INN-BIC model’s significant ability to explain the variability of TOC data. At the same time, the model’s prediction error metrics were also outstanding, as shown in Table 3. The average absolute error (MAE) and root mean square error (RMSE) for Well JY1 were 0.119 and 0.198, respectively, while for Well JY2, the MAE and RMSE were 0.184 and 0.227, respectively. Among them, the well with the largest sample size, JS103, showed the highest prediction accuracy, with an MAE of only 0.0467 and an RMSE of 0.0647. These results fully validate the INN-BIC model’s robust, high-precision prediction capability and broad adaptability under different data scales and geological conditions.

Figure 7
Three scatter plots display the prediction results of different wells. (a) JY1 well shows a trend line with a formula of INN-BIC_Pre_TOC = 1.05 * Core_TOC + 0.024 and R² = 0.93. Data points closely align with this line.(b) JY2 well presents a trend line with the formula INN-BIC_Pre_TOC = 0.98 * Core_TOC + 0.023 and R² = 0.90. Data points moderately align.(c) JS103 well shows a trend line with the formula INN-BIC_Pre_TOC = 1.02 * Core_TOC - 0.007 and R² = 0.86. Data points align less precisely.

Figure 7. The prediction results of three key wells in Jingyan-Qianwei area. (a) The prediction results of INN-BIC algorithm in JY1. (b) The prediction results of INN-BIC algorithm in JY2. (c) The prediction results of INN-BIC algorithm in JS103.

Table 3
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Table 3. Comparative analysis of TOC error between prediction method and measured TOC in Qiongzhusi Formation in the research block.

The actual application results for Well JS103, shown in Figure 8, indicate that the INN-BIC model’s predictions are in good agreement with the core experimental results, with accuracy significantly improved over the original INN model. The model effectively overcame the modeling bottleneck of TOC prediction in highly heterogeneous shale reservoirs (e.g., the 3,350 m–3,390 m section). Under small sample conditions, the INN-BIC model exhibited exceptional prediction accuracy and demonstrated efficient offline inversion capability based on analytical formulas, providing a technical tool for shale organic matter abundance evaluation. The research results show that the INN, optimized using the BIC, is applicable for TOC prediction in highly heterogeneous reservoirs.

Figure 8
Geological log chart showing well depth from 3350 to 3550 meters, with various measurements like density (DEN), gamma ray (GR), and mineral composition. The chart displays curves and color-coded sections representing different materials such as quartz, calcite, and pyrite, alongside graphs for total organic carbon (TOC) content analyses.

Figure 8. Comparison of TOC calculation models of JS103 well in the research block. The figure above shows, from left to right, the following columns:1–4: Depth (m); Density (DEN: g/cm3)/Neutron Porosity (CNL: %)/Acoustic Time Difference (AC: μs/ft.); Resistivity (RD/RS: ohm·m); Natural Gamma (GR: gAPI)/Uranium Content (U: ppm)/Potassium Content (K: ppm).5: Mineral Content (Illite/Quartz/Potassium Feldspar/Sodium Feldspar/Calcite/Dolomite/Pyrite/Kerogen: kg/kg).6: Core Measured TOC (TOC-Core: %)/Stepwise Regression Method Calculated TOC (TOC-StepW: %).7: Core Measured TOC (TOC-Core: %)/BP Neural Network Calculated TOC (TOC-BP: %).8: Core Measured TOC (TOC-Core: %)/Support Vector Machine Algorithm Calculated TOC (TOC-SVM: %).9: Core Measured TOC (TOC-Core: %)/Original INN Model Calculated TOC (TOC-INN: %).10: Core Measured TOC (TOC-Core: %)/INN-BIC Model Calculated TOC (TOC-INN-BIC: %).

5 Discussion and future work

5.1 Method comparison discussion

To further verify the superiority of the INN-BIC model, a multi-method comparison analysis was conducted on Well JS103 (Table 4). In this analysis, the original INN neural network used both quadratic and cubic polynomial terms for fitting, and the model achieved its best performance with the following expression (Equation 7):

TOC1TOC2TOCn=1U1U12U131U2U22U231UnUn2Un30.157050.0959120.018130.001186+1LogRD1LogRD12LogRD131LogRD2LogRD22LogRD231LogRDnLogRDn2LogRDn358.6421727285.4348998440.042337306.05899064+1LogRS1LogRS12LogRS131LogRS2LogRS22LogRS231LogRSnLogRSn2LogRSn359.0139273788.1119924942.069691336.46564597+1AC1AC12AC131AC2AC22AC231ACnACn2ACn32.021916070.024806230.000777230.00001078+1GR1GR12GR131GR2GR22GR231GRnGRn2GRn31.587709910.041501410.000348000.00000089+ε(7)

Table 4
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Table 4. Comparison of results of different prediction methods.

In the formula, n is the number of sample points; ε for the global error.

The results show that the coefficient of determination (R2) of the INN-BIC model is approximately 11 times, 79%, and 25% higher than the three traditional computational methods: stepwise regression, BP neural network, and SVM models, respectively. Compared to the original INN model, the INN-BIC model improved by 65%. Furthermore, the INN-BIC model achieved the lowest average absolute error (MAE) and root mean square error (RMSE), highlighting the model’s advantages in prediction accuracy and stability.

From the example application of Well JS103 in Figure 7, it can be seen that, in the depth interval of 3,350 m–3390 m, where the mineral composition undergoes dramatic changes and strong heterogeneity is developed, the three traditional prediction models (stepwise regression, BP neural network, SVM) as well as the original INN model show clear limitations. Specifically, the four algorithms exhibit a delayed response to rapid fluctuations in TOC content, struggling to accurately identify such complex changes and showing poor convergence. Additionally, under the limited sample conditions of core experiments, traditional methods fail to capture the complex nonlinear relationships between reservoir parameters and well log responses. In lithological transition zones, significant deviations in prediction results are observed. In contrast, the INN model, with its reversible computation architecture, demonstrates unique advantages. Through the backpropagation mechanism, the model decodes the implicit mapping relationship between geological parameters and well log responses, accurately tracking TOC content changes and effectively reducing fitting errors. The prediction results show a high degree of agreement with the core experimental data, confirming the model’s applicability to highly heterogeneous shale layers. More importantly, this model supports offline high-precision inversion of TOC content based on analytical formulas, without relying on artificial intelligence platforms.

5.2 Algorithm advantages discussion

This study innovatively introduces the INN into the field of shale TOC prediction, overcoming the challenge of low prediction accuracy of traditional algorithms in highly heterogeneous geological environments. Various prediction methods were examined in this study. The stepwise regression method performs linear transformations for highly correlated parameters, but its prediction accuracy significantly decreases when there is a complex nonlinear relationship between well log parameters and TOC. On the other hand, SVM and BP neural network can perform nonlinear fitting, which improves prediction accuracy to some extent; however, their processes are hidden within the network, making it difficult to interpret the geological significance between the predicted results and output parameters. The original INN model can effectively solve this problem, but its network structure is relatively rigid, with activation functions typically using fixed-degree polynomials. In such cases, parameter optimization must consider the contribution of each degree of every feature, which greatly increases the training complexity, leading to potential underfitting and increased prediction bias.

The INN-BIC model proposed in this paper improves upon this by using the BIC value as an adaptive dynamic parameter to optimize the input degree of each feature (as shown in Equation 6). This mechanism automatically discards unnecessary higher-order terms of features to reduce model fitting dimensions, enabling the model to quickly converge to a global optimal solution and accurately characterize TOC variations in lithological transition zones. Ultimately, by summing the weighted outputs of each sub-network model, a mathematical expression with clear geological and physical meaning is obtained, which can explain the geological significance between well log parameters and TOC. Additionally, the model can be processed offline without relying on artificial intelligence platforms. The application examples from three key wells in the research block demonstrate that the model significantly improves the prediction accuracy and interpretability of TOC in highly heterogeneous shale layers, providing effective technical support for shale gas sweet spot.

5.3 Future work

Although the INN model demonstrates significant advantages in predicting TOC content in the Qiongzhusi Formation shale, several directions for further exploration remain.

A. Multi-source Data Fusion Expansion. The current model primarily relies on well log data to construct the prediction relationship. Future research can integrate seismic attributes (such as velocity and acoustic impedance, which are sensitive to source rocks), geochemical indicators, and other multi-source information to build a more comprehensive TOC prediction system. For example, seismic profiles can be used to represent and characterize the spatial distribution and variations of organic matter (Ehsan et al., 2025b; Yu et al., 2023; Wang et al., 2023; Sahoo et al., 2021).

B. Co-inversion with Nuclear Magnetic Resonance (NMR) Technology. Exploring the integration of Nuclear Magnetic Resonance (NMR) technology into the analytical framework could allow for the simultaneous quantification of other key reservoir parameters (such as porosity and water saturation). Although the nuclear dipole coupling effect in organic matter may cause specific signal attenuation, new NMR analysis methods could be developed to utilize signal differences to quantitatively assess organic matter abundance and characteristics, providing complementary information for TOC prediction (Guo et al., 2025; Garro Linck et al., 2024; Feng et al., 2023; Jia et al., 2018).

6 Conclusion

The INN-BIC model proposed in this study has been shown to be highly applicable in predicting the Total Organic Carbon (TOC) content in the heterogeneous shelf-type shale of the Qiongzhusi Formation in the Sichuan Basin. The following important conclusions were drawn.

A. The INN-BIC model, through feature decoupling and adaptive degree selection, improves prediction accuracy by 11 times compared to stepwise regression, 79% compared to BP neural network, 25% compared to SVM, and 65% compared to the original INN model. The prediction error is reduced by 82%, significantly improving the evaluation accuracy of highly heterogeneous shale miner reservoirs.

B. The INN-BIC model quantitatively characterizes the nonlinear relationships between well log parameters and TOC through adaptive feature selection, effectively identifying the organic matter enrichment patterns in the research block. It also reveals the “deep-water-shallow-water alternating shelf deposition” rhythmic interlayer structure of the Qiongzhusi Formation in the research block, providing a new technical approach for evaluating overmature shale gas reservoirs.

C. The INN-BIC model combines the high accuracy of machine learning with the interpretability of statistical models. Its formulaic output is suitable for real-time well log interpretation and provides reliable quantitative data for shale gas sweet spot evaluation, driving the transition of shale gas reservoir evaluation from “experience-driven” to “data-mechanism integration.”

Data availability statement

The data analyzed in this study is subject to the following licenses/restrictions: The data will be provided upon reasonable request. Requests to access these datasets should be directed to ZR, MjcyNjEwMjI1OEBxcS5jb20=.

Author contributions

PZ: Writing – original draft. ZR: Writing – review and editing. FZ: Methodology, Writing – review and editing. WW: Data curation, Writing – review and editing. LC: Formal Analysis, Writing – review and editing. CF: Data curation, Writing – review and editing. WX: Formal Analysis, Writing – review and editing.

Funding

The author(s) declare that financial support was received for the research and/or publication of this article. This research was funded by Research Foundation of China University of Petroleum-Beijing at Karamay (XQZX20230009), Natural Science Foundation of Xinjiang Uygur Autonomous Region (2022D01B140, 2021D01E22), National Natural Science Foundation of China(42204121, 42364007), Research project of the Tianchi Talent Introduction Plan in Xinjiang Uygur Autonomous Region, the key research and development project (Nos. 2024B01016, 2024B01016-1 and 2024B01016-3), the Tianshan talent program (No. 2024TSYCCX0069).

Conflict of interest

Author FZ was employed by Sinopec Matrix Corporation.

The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Generative AI statement

The author(s) declare that no Generative AI was used in the creation of this manuscript.

Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.

Publisher’s note

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Keywords: Qiongzhusi Formation, shale, total organic carbon, interpretable neural network, heterogeneity

Citation: Zhang P, Ren Z, Zhang F, Wang W, Cui L, Feng C and Xie W (2025) A total organic carbon prediction algorithm for heterogeneous shale based on interpretable neural network: a case study of Qiongzhusi Formation shale in the Sichuan Basin. Front. Earth Sci. 13:1696607. doi: 10.3389/feart.2025.1696607

Received: 03 September 2025; Accepted: 13 October 2025;
Published: 05 November 2025.

Edited by:

Soroush Abolfathi, University of Warwick, United Kingdom

Reviewed by:

Muhsan Ehsan, Bahria University, Pakistan
Xingye Liu, Chengdu University of Technology, China

Copyright © 2025 Zhang, Ren, Zhang, Wang, Cui, Feng and Xie. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Zilong Ren, MjAyMzIxNjc0OUBzdC5jdXBrLmVkdS5jbg==

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.