Abstract
A curvilinear relationship between mammalian metabolic rate and body size on a log-log scale has been adopted in lieu of the longstanding concept of a 3/4 allometric relationship (Kolokotrones et al., ). The central tenet of Metabolic Ecology (ME) states that metabolism at the individual level scales-up to drive the ecology of populations, communities and ecosystems. If this tenet is correct, the curvature of metabolism should be perceived in other ecological traits. By analyzing the size scaling allometry of eight different mammalian traits including basal and field metabolic rate, offspring biomass production, ingestion rate, costs of locomotion, life span, population growth rate and population density we show that the curvature affects most ecological rates and times. The prevalence of this non-linearity can be put forward as a proof for the real existence of the curvature described in mammalian basal metabolic rate and as support for ME. However, the curvilinear relationship between metabolic rate and body size does not allow an analytical solution for the scaling equations of the Metabolic Theory of Ecology (MTE). Numerical simulations of the ontogenetic growth model used by MTE to scale from metabolism to developmental times show that the resulting body mass scaling for developmental time and traits at the population level would be curvilinear but with different scaling coefficients. This prevents the full acceptance or rejection of MTE on the basis of the coincidence or lack of coincidence of the exact values of the scaling exponents of different traits.
1. Introduction
Metabolic Ecology (ME) views metabolism as the backbone of ecology, driving the relationship between the biology of individual organisms and the ecology of populations, communities and ecosystems (Brown et al., ). The Metabolic Theory of Ecology (MTE) (Brown et al., ) is a specific framework within ME based on a central equation that attempts to summarize in a single model the effects of body size and temperature on metabolic rate:
where B is basal metabolic rate, B0 is a normalization constant, M is body mass, β is the allometric exponent, and e−E/kT is the Boltzmann's factor describing the temperature dependence of metabolic processes (where E is the activation energy of metabolic reactions, k is Boltzmann's constant, and T is the absolute temperature in K). Following the work of West et al. (), β is assumed to have a constant value of 0.75, while E is close to 0.65 eV for aerobic processes (Gillooly et al., ).
The power law between B and M captured the attention of ecologists for decades, promoting an intense debate on the exact value of β (Heusner, ; Hayssen and Lacy, ; West et al., ; Dodds et al., ; White and Seymour, ; Savage et al., ; White and Kearney, ; Glazier, ; White and Kearney, ). Taking logarithms, the relationship between B, M, and temperature is rewritten as:
with β0 being the logarithm of B0 and ϵ the error term that includes both experimental error and variability in metabolic rate not explained by body size and temperature. According to Equations 1 and 2, the slope of the relationship between the logarithm of the temperature-corrected B and the logarithm of M is the constant value β.
However, Kolokotrones et al. () found that this relationship is not linear in mammals, and provided a general overview of its causes and consequences. The conclusion of this work is that the relationship between metabolism and body size describes a convex curvature and a quadratic polynomial model of the form:
which accounts for a higher amount of variance than a linear model. This equation implies that in a log-log plot of the temperature-corrected B vs. M, the slope is β1 + 2 * β2 * ln(M), a non-constant value that increases with body size. Consequently, the increase in metabolic rate with body size is more pronounced for large mammals than for smaller ones. This curvilinear relationship calls into question the form of the central equation of MTE (Equation 1) and suggests that it should take the form of :
where the allometric exponent β1 can be considered as a scale dependent coefficient (Deeds et al., ; Mackay, ), while the exponent β2 is a measure of the degree of curvilinearity.
The goal of this work is to explore both the consequences of the curvature of metabolism on the scaling of other life history traits, and on tests for the premises of Metabolic Ecology through the coincidence of predicted scaling exponents with observations of data. Assuming Equation 1 and the central tenet of ME as valid, MTE predicts that body size and temperature should rule the ecology of individuals and populations. This central Equation 1, linear on a log-log scale, has been applied to different ecological processes and levels of organization (Brown et al., ; Brown and Sibly, ). The persuasive model of West et al. () suggests that the mass scaling allometry then takes some value multiple of 1/4 depending on the phenomenon under consideration (Table 1). Whole organism rates should scale with body mass with a 3/4 allometry, while mass-specific rates should scale with a mass exponent of −1/4. Biological times should show a 1/4 mass scaling while measures of ecosystem carrying capacity such as maximal population density should scale as the −3/4 power of body mass (Brown et al., ). Tests of the coincidence of the observed body-size scaling coefficients with these predictions have been used to support (e.g., Ernest, ; Savage et al., ; Economo et al., ) or reject (i.e., Duncan et al., ) MTE.
Table 1
| Phenomenon | Proposed scalings | MTE | Curvilinear scaling | Curvature | Transformation |
|---|---|---|---|---|---|
| Whole organism rates B, FMR, ingestion rate, productivity | Trait ∝ B | B = B0 * M3/4 | B = B0 * Mβ1 * M(β2 * ln(M)) | Convex | Trait |
| Mass specific rates locomotion costs, population growth rate | Trait ∝ B/M | R = R0 * M−1/4 | R = R0 * M(β1 − 1) * M(β2 * ln(M)) | Convex | Trait*Mass |
| Biological times life span | Trait ∝ M/B | T = T0 * M1/4 | T = T0 * M(1 − β1) * M(−β2 * ln(M)) | Concave | Mass/Trait |
| Pop. carrying capacity Pop. density | Trait ∝ 1/B | K = K0 * M−3/4 | K = K0 * M−β1 * M(−β2 * ln(M)) | Concave | Trait−1 |
Body size and metabolic scaling for different ecological traits/phenomena.
The proposed scalings show the expected proportionality between each trait and metabolic rate together with the predicted scaling from the linear model and the expected scaling from the curvilinear model using the simple proportionalities. Note that if the ontogenetic growth model is used to derive these scalings the values of β1 and β2 would change between traits. Column curvature indicates the convexity/concavity of the theoretical curve described by the trait in a log-log plot vs. body mass. The transformation column refers to the steps given to adequate each phenomenon to the allometry shown by metabolism.
To predict the scaling of developmental times (Gillooly et al., ) and rates at the population level (Savage et al., ; Duncan et al., ), MTE incorporates Equation 1 in a growth model (West et al., ; Hou et al., ; Moses et al., ) that balances energy uptake and maintenance costs during ontogeny. An important assumption in this general ontogenetic growth model is that the metabolic rate during ontogeny scales with the same allometric coefficient observed across adult animals of different species (Moses et al., ; Makarieva et al., ; Zuo et al., ). So ontogenetic growth is modeled as:
where m is the mass of the organism as a function of time (t), and a and b are parameters related to fundamental cellular properties (West et al., ; Gillooly et al., ; Moses et al., ).
Integrating Equation 5 from t = birth to t = maturity, yields the prediction that developmental time should scale interspecifically with an exponent equal to β − 1 (Gillooly et al., ). MTE then uses demographic theory to make predictions at the population level (i.e., Jetz et al., ; Savage et al., ; Duncan et al., ; White et al., ).
If we follow the same steps, but instead of using Equation 1 we use the curvilinear Equation 4, we obtain the equation:
whose integral cannot be solved analytically to make predictions on the exact curvilinear scaling of biological times (and hence rates at the population level) with body mass. Intuitively, however, the increasing slope in the allometry of mammalian metabolism should translate to a curvature in the size scaling of other metabolic-mediated traits such as life span, population density or population growth rate. If these curvatures exist they should be perceived as convex for whole organism and mass specific rates, and as concave for biological times and population carrying capacities (Table 1), with critical consequences on species on the extremes of the body size range.
In this work we demonstrate the propagation of the curvature of metabolism through different mammalian life-history traits, both at the individual and population level. We will first show the existence of curvatures in the different life history traits evaluated; then, we will show that the type of curvature in terms of concavity/convexity is different for each trait as expected according to the proportionality between the scaling of each trait and metabolic rate. Because the allometric coefficients change with body size, the existence of such curvilinear relationships prevents any attempts to test MTE on the basis of comparison of linear log-log scaling coefficients unless the ranges of body mass considered by all data sets are the same. Given the low number of species for which all traits have been measured, we will compare the body size scaling of each trait with the size scaling of metabolism for the same subset of species. Finally we will try to solve the differential Equation 6 numerically to understand how the curvature of metabolism should affect the scaling of other biological traits. As explained above, the differential Equation 6 is based on the assumption that interspecific and intraspecific metabolic scalings should be equal, but here we will explore the consequences of the relaxation of this assumption on the curvilinear scaling of metabolic rate.
2. Materials and methods
2.1. Evaluated life history traits
We performed a bibliographic search on life history traits of mammals, both at the organism and at population levels of organization. The result of this compilation is presented Data Sheet 1 in Supplementary Material. Traits at the population level of organization refer to traits varying at the population level for which we are using a species level average. We considered eight different traits (basal metabolic rate in Js−1, field metabolic rate in Js−1, offspring biomass production in kgs−1, ingestion rate in Js−1, costs of locomotion in LO2kg−1m−1, life span in s, population growth rate in s−1 and population density in m−2) using nine different bibliographic sources (see Table S1). If available, we obtained the data directly from tables but when tables were not provided we digitized the data from plots (Table S1). The offspring biomass production P was calculated using the clutch size C, the number of clutches produced per year N, and the mass of each individual offspring m, obtaining P = CNm. The data on ingestion rate refers both to carnivores and herbivores from the work of Farlow () (Table S1). Data on body temperatures were compiled from the work of McNab (), and are reported also Data Sheet 1 in Supplementary Material.
To homogenize the species names of the different data sets, we followed the nomenclature provided by Fritz et al. (). Then, we constructed a database with the values of each trait reported for each mammalian species considered (Data Sheet 1 in Supplementary Material). This compilation results in a total of 1365 species. Data on basal metabolic rate is available for 746 different species combining data from the data-bases of McNab (), Sieg et al. (), and Savage et al. (). For those species with more than one data reported from the different data sets we calculated an arithmetic mean of the logarithms for B and body mass; these are the values used in the comparisons with the other traits in Figure 3. Data on field metabolic rate is available for 116 species of which 84 have associated values of B. Data on offspring biomass productivity is available for 532 species of which data on B is available for 279 species. In the case of life span, we found values of B for 270 out of 592 species. Data on population growth rate is available for 294 species of which we have values of B in the case of 162 species. Finally, for population density we have values for 553 different species, of which data for B is available for 245 species.
2.2. Influence of temperature and phylogeny
Metabolic rate and all the related life history traits are highly influenced by temperature (Ernest et al., ; Savage et al., ; White et al., ). Although we consider only endotherm mammals, there can be small differences in body temperature between the species. For the analysis of the effect of the temperature in each life history trait, we considered the compilation by McNab (), used by Kolokotrones et al. () (see Data Sheet 1 in Supplementary Material). Additionally, in order to account for the non-independence of the data due to the shared evolutionary history of species, we analyzed the different traits by means of phylogenetic least squares regression (PGLS). To do that we used the phylogenetic tree provided by Fritz et al. (), which is an updated version of the tree of Bininda-Emonds et al. () considering 5020 species of mammals. The branch lengths and structure of this tree represents the evolutionary history and phylogeny of each species. In consequence, to carry out the PGLS, we first homogenized the species names to the nomenclature used by Fritz et al. () as described above. Once each species has an associated phylogenetic position, we use REstricted Maximum Likelihood (REML) instead of Maximum Likelihood (following the methodology of Kolokotrones et al., ) for fitting the models. These analyses were carried out using the APE (Paradis et al., ) and NLME (Pinheiro et al., ) packages for R (R Core Team, ). The parameter λ (Pagel, ; Freckleton et al., ) of the regressions was also calculated as a measure of the importance of phylogeny on the residuals errors of the regression (Revell, ).
2.3. Analysis of the coincidence of the curvatures and measurement error
To compare the curvilinear fit of B and the curvilinear fits of the other life-history traits, and given that not all the traits follow 3/4 allometries, the values of the traits were transformed so that the expected scaling, based on MTE, would be 3/4. To transform each trait, we followed the mathematical description shown in “Transformation” column of Table 1, which consisted of easy mathematical transformations between B and M. Once the traits were transformed, to test the variation in the linear slopes we performed standard linear regressions of each trait and body size. The 95% confidence intervals of these slopes are shown in Figure S1 with the word “Slope.” The curvatures of the different traits were analyzed by fitting an orthogonal polynomial regression. This regression is of the form Y = α + β(X − X) + γ(X2 + aX − b); where X is the average of the X values, and a and b are chosen so that Σ(X2 + aX − b) = 0 and ΣX(X2 − aX − b) = 0. This method does not affect the estimate of γ and it makes the estimates of α, β and γ independent of each other. Additionally, this method is not affected by changes of scale, so the results are not dependent on the mass unit considered. To compare the coefficients of two orthogonal regressions the average of the X values (i.e., the average body masses) should be equal. For some species the average body mass was different in each trait database, which would make the average body sizes differ. To avoid this error in the calculation of the orthogonal regression coefficients we used an average body mass from the two datasets being compared.
To analyze the effect of measurement error and intraspecific variability in BMR, we performed a similar comparison using BMR estimates reported by two different bibliographic sources for the same species. To create a BMR data set where the measurements for each species come from different sources, we removed from the work of McNab () and Sieg et al. () those species that had the same first author as the original data source (Data Sheet 1 in Supplementary Material). To do that we performed an extensive search on the primary sources used by these studies on BMR. Quite often these sources were citations that compiled data from several sources, although a big effort was done to disentangle these sub-references, it was sometimes impossible to obtain the original data source. For example, although data on mass and BMR for the Chilean rock rat (Aconaemys fuscus) were exactly the same in the two data sets, the data sources (or the sub-references we were able to obtain) were different. We included these species in our data set so our approach is conservative in the sense that some references considered here to be different could come from the same original source. In the case of the BMR data base of Savage et al. (), it was not possible to analyze the bibliographic origin of the data, as the amount of sub-references was too high.
2.4. Analysis of the influence of the curvature of metabolism on the scaling of developmental time
We used a numerical model to test the resulting interspecific scaling of developmental times (and hence traits at the population level) if the assumption of equal ontogenetic and interspecific metabolic scalings is relaxed. As we explained in the introduction, if the curvilinear scaling in B is accepted, the integral of Equation 6 cannot be solved analytically to predict the exact scaling of developmental time and population rates with body size. To solve the differential growth Equation 6 we used the solver for ordinary differential equations, switching automatically between stiff and non-stiff methods (lsoda) (Petzold, ) using package “deSolve” in the R statistical package (R Core Team, ) (see simulations in Figures 4A,B). The code used to run the simulations presented in Figure 4 is provided in the Presentation 1 in Supplementary Material.
3. Results
3.1. Scaling-up the curvature of metabolism
We have evaluated the propagation of the curvature of metabolic rate through seven different life history traits (see Materials and Methods and Table S1). The log-log plots of these traits vs. body mass show a curvilinear response in most traits (Figure 1, where the traits are ordered from the individual, upper panels, to the population level of organization, lower panels). This visual perception of the curvatures is supported by the better fit and lower Akaike values of the quadratic model compared to the linear fit and the significance of the quadratic term in Equation 3 (Tables 2, 3). Only for population density, where the variability explained by body size is small, the quadratic term is not significant (Table 3). In those cases where the curvature is significant, the convexity and concavity of these curvatures is coincident with the scalings proposed by MTE and shown in Table 1 (sign of β2 in Table 3).
Figure 1
Table 2
| Trait | Parameter | Estimate | SE | p-value | r2 | AIC | n |
|---|---|---|---|---|---|---|---|
| Basal metabolic rate | β0 | 1.0885 | 0.0170 | <2*10−16 | 0.9574 | 766.245 | 746 |
| β | 0.7223 | 0.0055 | <2*10−16 | ||||
| Field metabolic rate | β0 | 2.1261 | 0.0491 | <2*10−16 | 0.9454 | 176.3927 | 116 |
| Capellini et al., | β | 0.7191 | 0.0162 | <2*10−16 | |||
| Productivity | β0 | −19.0720 | 0.0367 | <2*10−16 | 0.8853 | 1310.87 | 532 |
| Ernest et al., | β | 0.6859 | 0.0107 | <2*10−16 | |||
| Ingestion rate | β0 | 2.5159 | 0.0385 | <2*10−16 | 0.9563 | 485.9053 | 258 |
| Farlow, | β | 0.7097 | 0.0094 | <2*10−16 | |||
| Locomotion costs | β0 | −7.5373 | 0.0414 | <2*10−16 | 0.8832 | 17.0347 | 46 |
| Fedak and Seeherman, | β | −0.2901 | 0.0159 | <2*10−16 | |||
| Life span | β0 | 19.5565 | 0.0223 | <2*10−16 | 0.688 | 894.8694 | 592 |
| Ernest et al., | β | 0.2187 | 0.0060 | <2*10−16 | |||
| Population growth rate | β0 | −17.6688 | 0.0494 | <2*10−16 | 0.5693 | 687.9741 | 294 |
| Duncan et al., | β | −0.2639 | 0.0134 | <2*10−16 | |||
| Population density | β0 | −9.9342 | 0.0749 | <2*10−16 | 0.6319 | 2199.545 | 553 |
| Damuth, | β | −0.7644 | 0.0248 | <2*10−16 |
Fit of the data in Figure 1 of the main text using a linear (ln(Trait) ~ β0 + βln(M)) model.
“Trait” is each one of the analyzed life history traits; “n” represents the number of data points represented.
Table 3
| Trait | Parameter | Estimate | SE | p-value | r2 | AIC | n |
|---|---|---|---|---|---|---|---|
| Basal metabolic rate | β0 | 0.9856 | 0.0215 | <2*10−16 | 0.9603 | 715.2402 | 746 |
| β1 | 0.7301 | 0.0054 | <2*10−16 | ||||
| β2 | 0.0123 | 0.0016 | 3.78*10−13 | ||||
| Field metabolic rate | β0 | 1.8307 | 0.0655 | <2*10−16 | 0.9585 | 146.5723 | 116 |
| Capellini et al., | β1 | 0.7371 | 0.0144 | <2*10−16 | |||
| β2 | 0.0337 | 0.0056 | 2.77*10−8 | ||||
| Productivity | β0 | −19.2017 | 0.0444 | <2*10−16 | 0.8905 | 1288.596 | 532 |
| Ernest et al., | β1 | 0.6481 | 0.0129 | <2*10−16 | |||
| β2 | 0.0135 | 0.0027 | 9.08*10−7 | ||||
| Ingestion rate | β0 | 2.3459 | 0.0579 | <2*10−16 | 0.9587 | 473.2655 | 258 |
| Farlow, | β1 | 0.7033 | 0.0093 | <2*10−16 | |||
| β2 | 0.0104 | 0.0027 | 0.000145 | ||||
| Locomotion costs | β0 | −7.6466 | 0.0602 | <2*10−16 | 0.897 | 14.03475 | 46 |
| Fedak and Seeherman, | β1 | −0.2910 | 0.0151 | <2*10−16 | |||
| β2 | 0.0160 | 0.0067 | 0.0209 | ||||
| Life span | β0 | 19.6394 | 0.0257 | <2*10−16 | 0.7061 | 861.6025 | 592 |
| Ernest et al., | β1 | 0.2435 | 0.0071 | <2*10−16 | |||
| β2 | −0.0083 | 0.0013 | 3.2*10−9 | ||||
| Population growth rate | β0 | −17.7446 | 0.0524 | <2*10−16 | 0.5892 | 676.0316 | 294 |
| Duncan et al., | β1 | −0.3065 | 0.0173 | <2*10−16 | |||
| β2 | 0.0103 | 0.0027 | 0.000206 | ||||
| Population density | β0 | −9.9429 | 0.1037 | <2*10−16 | 0.6319 | 2201.53 | 553 |
| Damuth, | β1 | −0.7654 | 0.0262 | <2*10−16 | |||
| β2 | 0.00096 | 0.0079 | 0.904 |
Fit of the data in Figure 1 of the main text using a quadratic model (ln(Trait) ~ β0 + β1ln(M) + β2(ln(M))2).
3.2. Influence of temperature and phylogeny
When the allometry of these traits was analyzed taking into account the possible effects of body temperature or the phylogenetic relationship of the species within each data set, the curvature remains significant for most traits, except for those traits at the population level (Tables 4, 5). Figure 2 allows a visual comparison of the curvatures of the different traits using the quadratic model with temperature (left panels), and the quadratic model accounting for the phylogenetic history of each species (PGLS regression, right panels). As in Figure 1, the slope and convexity of each relationship depend on the allometric coefficient of the traits. Although the curvatures were statistically significant when temperature and phylogeny are taken into account (Tables 4, 5), the different curvatures obtained among traits may be caused by the lower number of data points and restricted body mass range available when phylogeny, and more critically temperature, are considered (column “n” in Tables 2–5). With some exceptions, the models accounting for phylogeny and temperature have lower Akaike values than the linear or the quadratic fits (Tables 2–5). Besides the high values of λ obtained (Table 5), this means that models considering the phylogeny of species are the most appropriate to evaluate the curvature of the different scaling relationships.
Table 4
| Trait | Parameter | Estimate | SE | p-value | r2 | AIC | n |
|---|---|---|---|---|---|---|---|
| Basal metabolic rate | β0 | 36.0637 | 2.4946 | <2*10−16 | 0.9685 | 201.0618 | 446 |
| β1 | 0.7118 | 0.0070 | <2*10−16 | ||||
| β2 | 0.0120 | 0.0021 | 4.93−8 | ||||
| βT | −0.9377 | 0.0665 | <2*10−16 | ||||
| Field metabolic rate | β0 | 21.9552 | 9.8966 | 0.0319 | 0.9545 | 47.4874 | 47 |
| Capellini et al., | β1 | 0.6739 | 0.0240 | <2*10−16 | |||
| β2 | 0.0216 | 0.0089 | 0.0200 | ||||
| βT | −0.5370 | 0.2635 | 0.0477 | ||||
| Productivity | β0 | 10.1627 | 10.7474 | 0.3458 | 0.8473 | 337.8751 | 157 |
| Ernest et al., | β1 | 0.6603 | 0.0230 | <2*10−16 | |||
| β2 | 0.0179 | 0.0078 | 0.0241 | ||||
| βT | −0.7836 | 0.2871 | 0.00709 | ||||
| Life span | β0 | −2.6906 | 8.2359 | 0.7444 | 0.6182 | 225.8497 | 140 |
| Ernest et al., | β1 | 0.2497 | 0.0173 | <2*10−16 | |||
| β2 | −0.0116 | 0.0057 | 0.0445 | ||||
| βT | 0.5956 | 0.22001 | 0.00765 | ||||
| Population growth rate | β0 | −19.4178 | 16.8366 | 0.252 | 0.4402 | 223.1388 | 89 |
| Duncan et al., | β1 | −0.2647 | 0.0334 | 8.75*10−12 | |||
| β2 | −0.0033 | 0.0105 | 0.748 | ||||
| βT | 0.0551 | 0.4488 | 0.903 | ||||
| Population density | β0 | 19.9974 | 30.9966 | 0.5198 | 0.617 | 593.1144 | 145 |
| Damuth, | β1 | −0.9327 | 0.0619 | <2*10−16 | |||
| β2 | −0.0609 | 0.0226 | 0.0080 | ||||
| βT | −0.7822 | 0.8279 | 0.3463 |
Fit of the data shown in left panels of Figure 2, using a quadratic model with a temperature term (ln(Trait) ~ β0 + β1ln(M) + β2(ln(M))2 + βT / T).
Table 5
| Trait | Parameter | Estimate | SE | p-value | AIC | n | λ |
|---|---|---|---|---|---|---|---|
| Basal metabolic rate | β0 | 0.7340 | 0.2316 | 0.0016 | 329.1458 | 744 | 0.8473 |
| β1 | 0.7355 | 0.0090 | <2*10−16 | ||||
| β2 | 0.0066 | 0.0019 | 0.0006 | ||||
| Field metabolic rate | β0 | 1.7947 | 0.5151 | <2*10−16 | 151.2504 | 116 | 0.5631 |
| Capellini et al., | β1 | 0.7135 | 0.0209 | <2*10−16 | |||
| β2 | 0.0272 | 0.0066 | 1*10−4 | ||||
| Productivity | β0 | −19.1585 | 0.2205 | <2*10−16 | 872.4385 | 530 | 0.8905 |
| Ernest et al., | β1 | 0.6194 | 0.0223 | <2*10−16 | |||
| β2 | 0.0016 | 0.0034 | 0.6279 | ||||
| Life span | β0 | 19.6068 | 0.1204 | <2*10−16 | 547.6513 | 590 | 0.7704 |
| Ernest et al., | β1 | 0.1528 | 0.0137 | <2*10−16 | |||
| β2 | 0.0044 | 0.0019 | 0.0256 | ||||
| Population growth rate | β0 | −17.5413 | 0.4828 | <2*10−16 | 399.0056 | 294 | 0.9600 |
| Duncan et al., | β1 | −0.2290 | 0.0220 | <2*10−16 | |||
| β2 | 0.0034 | 0.0032 | 0.2962 | ||||
| Population density | β0 | −9.7248 | 0.8825 | <2*10−16 | 1910.883 | 545 | 0.7480 |
| Damuth, | β1 | −0.4520 | 0.0544 | <2*10−16 | |||
| β2 | −0.0378 | 0.0106 | 4*10−4 |
Fit of the data shown in right panels of Figure 2 of the main text using phylogenetic least squares regression (ln(Trait) ~ β0 + β1ln(M) + β2(ln(M))2).
Column “λ” tests the phylogenetic signal of the relationship (see Materials and Methods).
Figure 2
3.3. Analysis of the coincidence of curvatures and measurement error
Tests on whether the curvature of each trait is coincident with the curvature found in basal metabolic rate cannot be based on the fits in Figure 1 for two reasons. First, because the estimates of the coefficients for the quadratic term in a traditional least-squares polynomial regression are dependent on the estimates for the linear term, and second, because the body mass ranges in each data set are different (Table S1), thus the expected fits for the linear term should also differ. To resolve these two problems we have performed pairwise comparisons using only those species for which both data on each life history trait and basal metabolic rate were available (Figure S1). We have then used orthogonal polynomial regression to test whether the first and second order polynomial terms coincide (i.e., whether the 95% confidence intervals overlap, see Materials and Methods for details on orthogonal polynomial regression). The confidence intervals for the second term of the polynomial fit overlap in all cases, indicating that the departure from linearity is similar in all cases. However, the estimates for the linear term (i.e., first term of the polynomial) only overlap with those for B in the case of field metabolic rate. For all the other traits analyzed, the allometric scaling coefficients differ, pointing to a mismatch in size scaling between most ecological traits and B.
This novel database with paired estimates of B and life history traits for each species lets us analyze the variance in metabolic rate not explained by body size. If a species has a metabolic rate different from that expected for animals of the same size (a difference measured by the residuals in a plot of metabolism vs body size), this difference should be perceived, following ME, in the residuals of the plots of other traits with body size for that same species. The analysis of the residuals of these body size relationships (Figure 3) indicates that higher residuals in B translate into higher residuals of field metabolic rate, but not into higher residuals for the rest of traits considered. This is an indication that, once the effects of body size on metabolic rate have been accounted for, the remaining variance in metabolic rate does not have any perceptible effects on the other traits.
Figure 3
To fully understand this result, we need to know if the residuals in the metabolism vs. body size relationship are an indication that a given species has a different metabolic rate or it is just the result of random or measurement error. As we pointed out in the introduction, the error term (ϵ) in Equations 2 and 3 includes both the experimental error and the variability not explained by body size. In an attempt to study the magnitude of this experimental error, we have compared two different data sets of basal metabolic rate (the one used by Kolokotrones et al.,
3.4. Analysis of the influence of the curvature of metabolism on the scaling of developmental time
In Figure 4A we provide a numerical example of the prediction of MTE using a simple, linear allometry of B (β1 = 3/4; β2 = 0) resulting in the predicted linear scaling of developmental time (γ1 = 1/4; γ2 = 0). However, following the same approach using the curvilinear model for B (Table 3) (β1 = 0.5593; β2 = 0.0123), the resulting scaling of developmental time has a γ1 = 0.4746 and a γ2 = −0.0061 (Figure 4B). Hence, if there is a curvilinear scaling of B with body size, following MTE we reach the counter-intuitive result that the scaling of developmental time should be curvilinear but with different scaling coefficients.
Figure 4

Numerical solutions for Equation 6. The inset in each panel represents the interspecific (black line) and ontogenetic (red lines) scalings of B vs. body size. The different symbols represent hypothetical adult body sizes of different species. The blue lines show the scaling of developmental time (DT, defined as the moment in which the organism reach an arbitrary fraction of adult body size) with body mass. The coefficients shown correspond to the models ln(Bontogenetic) = ao + α1 * ln(m) + α2 * ln(m)2; ln(Binterspecific) = ai + β1 * ln(M) + β2 * ln(M)2 and ln(DT) = a3 + γ1 * ln(M) + γ2 * ln(M)2; where m is the mass of the organism during growth and M is the asymptotic adult mass of the species. In (A,B), the ontogenetic and interspecific scalings are coincident; in (C) they are different and linear, and in (D) they are different and curvilinear. See Presentation 1 in Supplementary Material for further details on the mathematical background and the R code to solve the model.
Similarly, Figures 4C,D show two scenarios where the allometry of B during ontogeny is different to the allometry of the interspecific scaling of B. The most simple case is one where both scalings are linear on a log-log scale but ontogenetic B takes an allometric slope lower than interspecific allometric scaling. This reflects the commonly observed phenomenon that a juvenile of a species has a higher mass-specific metabolic rate (B/M) than an adult individual of another species with the same body mass (Makarieva et al.,
4. Discussion
The curvature of metabolism described by Kolokotrones et al. (
The finding that deviations from linear allometries occur is not a novel result. In the physiology and scaling community, certain non-linearity in this relationship has been known for a long time (Peters,
We have found also that when the effect of temperature is considered, the curvature remains significant for the traits at the individual level, but it seems to lose strength when higher order traits are evaluated. Clarke et al. (
Concerning the persistence of the curvatures when the temperature and the phylogenies are considered in our analysis, Figure 2 and Tables 4, 5 show that, in general, the curvatures remain, albeit they can be less evident in some traits. In any case, the Akaike of the fits considering temperature and phylogeny are, in general, lower than the linear and quadratic fits, indicating that these models are appropriate to evaluate the curvature of scaling. In the case of the phylogenetic approach, the values of λ (Table 5) are reasonably high, which indicates that the phylogenetic influence on these relationships is considerable. This result also indicates the importance of carrying out phylogenetic approaches when performing these kind of comparative analyses. The use of phylogenetic approaches is widely accepted nowadays, and there is no reason to present separate phylogenetic and non-phylogenetic controlled analyses (Freckleton,
Silva and Downing (
Charnov and Ernest (
Tests on the difference between the allometric scaling of different traits and the scalings predicted by MTE, based on the linear Equation 2, have been used to refute (i.e., Duncan et al.,
However, the existence of a curvature in metabolism introduces further uncertainties in the comparison of scaling coefficients. If Equation 3 is accepted as valid, it is not possible to analytically reach the prediction on the expected scalings for developmental time and traits at the population level. Nevertheless Equation 6 can be integrated numerically to show that when the scaling of B is curvilinear, the resulting scaling in developmental time is also curvilinear but with a different degree of curvilinearity (Figure 4). Furthermore, Equation 6 is reached after assuming that during ontogeny the scaling of B with body mass parallels interspecific scaling (Hou et al.,
A possible way to test ME would be to analyze the residuals of the relationship between B and body size. If a species has a B different than expected for its body size, it should have an influence on its ecology and be reflected in the residuals of other life history traits for this species. However, do the residuals hold ecological information or are they the result of random and experimental noise? Although some phylogenetic groups have been shown to fall above the B vs. mass regression line (McNab,
In summary, our analysis leaves an uncertain scenario on the acceptance of MTE as a general macroecological theoretical framework. We have shown that testing MTE on the basis of comparison of regression slopes is not a valid approach. Furthermore, the analysis of residuals shows that intraespecific and experimental errors are greater than expected, thus introducing some level of uncertainty in this kind of studies. The pervasive effect of body size on B, explaining a similar amount of variance than B measured in another set of individuals of the same species, makes difficult to analyze the residual variance. Studies measuring B and other ecological traits on the same set of individuals with sample sizes large enough to reduce experimental error are needed to fully evaluate MTE. In any case, the curvatures of the traits, in agreement with the concave/convex scaling expected by ME, point to a regularity in the curvilinear scaling of many different life history traits which could have a metabolic origin.
Conflict of interest statement
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Statements
Acknowledgments
This work was partially funded by Theme 6 of the EU Seventh Framework Program through the Marine Ecosystem Evolution in a Changing Environment (MEECE No. 212085), project METOCA funded by Spanish National I+D+I Plan, and project RADIALES from the Instituto Español de Oceanografía. Juan Bueno was a recipient of a PhD fellowship from the Instituto Español de Oceanografía. Authors would like to thank A. Isla, X. A. Morán, T. Huete, F. Cabello, and N. Weidberg for their comments and suggestions on the original paper.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Supplementary material
The Supplementary Material for this article can be found online at: http://www.frontiersin.org/journal/10.3389/fevo.2014.00061/abstract
References
1
BanavarJ. R.MosesM. E.BrownJ. H.DamuthJ.RinaldoA.SiblyR. M.et al. (2010). A general basis for quarter-power scaling in animals. Proc. Natl. Acad. Sci. U.S.A. 107, 15816–15820. 10.1073/pnas.1009974107
2
Bininda-EmondsO. R. P.CardilloM.JonesK. E.MacPheeR. D. E.BeckR. M. D.GrenyerR.et al. (2007). The delayed rise of present-day mammals. Nature446, 507–512. 10.1038/nature05634
3
BokmaF. (2001). Evolution of body size: limitations of an energetic definition of fitness. Funct. Ecol. 15, 696–699. 10.1046/j.0269-8463.2001.00548.x
4
BrownJ. H.GilloolyJ. F.AllenA. P.SavageV. M.WestG. B. (2004). Toward a metabolic theory of ecology. Ecology85, 1771–1789. 10.1890/03-9000
5
BrownJ. H.MarquetP. A.TaperM. L. (1993). Evolution of body size: consequences of an energetic definition of fitness. Am. Nat. 142, 573–584. 10.1086/285558
6
BrownJ. H.SiblyR. M. (2012). The metabolic theory of ecology and its central equation, in Metabolic Ecology: a Scaling Approach, eds SiblyR. M.BrownJ. H.Kodric-BrownA. (Chichester, UK: John Wiley & Sons, Ltd.). 10.1002/9781119968535.ch2
7
BrownJ. H.SiblyR. M.Kodric-BrownA. (2012). Metabolism as the basis for a theoretical unification of ecology, in Metabolic Ecology: a Scaling Approach, eds SiblyR. M.BrownJ. H.Kodric-BrownA. (Chichester, UK: John Wiley & Sons, Ltd.). 10.1002/9781119968535.ch
8
CalderW. A. (1984). Function and Life History. Cambridge, MA: Harvard University Press.
9
CapelliniI.VenditiC.BartonR. A. (2010). Phylogeny and metabolic scaling in mammals. Ecology91, 2783–2793. 10.1890/09-0817.1
10
CharnovE. L. (1993). Life History Invariants. Oxford: Oxford University Press.
11
CharnovE. L.ErnestS. K. M. (2006). The offspring-size/clutch-size trade-off in mammals. Am. Nat. 167, 578–582. 10.1086/501141
12
ClarkeA.RotheryP.IsaacN. J. B. (2010). Scaling of basal metabolic rate with body mass and temperature in mammals. J. Anim. Ecol. 79, 610–619. 10.1111/j.1365-2656.2010.01672.x
13
DamuthJ. (1981). Population density and body size in mammals. Nature290, 699–700. 10.1038/290699a0
14
DamuthJ. (1993). Cope's rule, the island rule and the scaling of mammalian population density. Nature365, 748–750. 10.1038/365748a0
15
DeedsE. J.SavageV.FontanaW. (2011). Curvature in metabolic scaling: a reply to mackay. J. Theor. Biol. 280, 197–198. 10.1016/j.jtbi.2011.03.036
16
DoddsP. S.RothmanD. H.WeitzJ. S. (2001). Re-examination of the “3/4-law” of metabolism. J. Theor. Biol. 209, 9–27. 10.1006/jtbi.2000.2238
17
DuncanR. P.ForsythD. M.HoneJ. (2007). Testing the metabolic theory of ecology: allometric scaling exponents in mammals. Ecology88, 324–333. 10.1890/0012-9658(2007)88[324:TTMTOE]2.0.CO;2
18
EconomoE. P.KerkhoffA. J.EnquistB. J. (2005). Allometric growth, life-history invariants and population energetics. Ecol. Lett. 8, 353–360. 10.1111/j.1461-0248.2005.00737.x
19
EhnesR. B.RallB. C.BroseU. (2011). Phylogenetic grouping, curvature and metabolic scaling in terrestrial invertebrates. Ecol. Lett. 14, 993–1000. 10.1111/j.1461-0248.2011.01660.x
20
EnquistB. J.EconomoE. P.HuxmanT. E.AllenA. P.IgnaceD. D.GilloolyJ. F. (2003). Scaling metabolism from organisms to ecosystems. Nature423, 639–642. 10.1038/nature01671
21
ErnestS. K. M. (2003). Life history characteristics of placental non-volant mammals. Ecology84:3401. 10.1890/02-9002
22
ErnestS. K. M.EnquistB. J.BrownJ. H.CharnovE. L.GilloolyJ. F.SavageV.et al. (2003). Thermodynamic and metabolic effects on the scaling of production and population energy use. Ecol. Lett. 6, 990–995. 10.1046/j.1461-0248.2003.00526.x
23
FarlowJ. O. (1976). A consideration on the trophic dynamics of a late cretaceous large-dinosaur community (Oldman formation). Ecology57, 841–857. 10.2307/1941052
24
FedakM. A.SeehermanH. J. (1979). Reappraisal of energetics of locomotion show identical cost in bipeds and quadrupeds including ostrich and horse. Nature282, 713–716. 10.1038/282713a0
25
FreckletonP. (2009). The seven deadly sins of comparative analysis. J. Evol. Biol. 22, 1367–1375. 10.1111/j.1420-9101.2009.01757.x
26
FreckletonP.HarveyP. H.PagelM. (2002). Phylogenetic analysis and comparative data: a test and review of evidence. Am. Nat. 160, 712–726. 10.1086/343873
27
FritzS. A.Bininda-EmondsO. R. P.PurvisA. (2009). Geographical variation in predictors of mammalian extinction risk: big is bad, but only in the tropics. Ecol. Lett. 12, 538–549. 10.1111/j.1461-0248.2009.01307.x
28
GaramszegiL. Z. (ed.). (2014). Uncertainties due to within-species variation in comparative studies: measurement errors and statistical weights, in Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology (Berlin: Springer-Verlag), 157–199. 10.1007/978-3-662-43550-2_7
29
GaramszegiL. Z.MøllerA. P. (2010). Effects of sample size and intraspecific variation in phylogenetic comparative studies: a meta-analytic review. Biol. Rev. 85, 797–805. 10.1111/j.1469-185X.2010.00126.x
30
GilloolyJ. F.CharnovE. L.WestG. B.SavageV. M.BrownJ. H. (2002). Effects of size and temperature on developmental time. Nature417, 70–73. 10.1038/417070a
31
GlazierD. S. (2005). Beyond the “3/4-power law”: variation in the intra-and interspecific scaling of metabolic rate in animals. Biol. Rev. 80, 611–662. 10.1017/S1464793105006834
32
GlazierD. S. (2014). Is metabolic rate a universal pacemaker for biological processes?Biol. Rev. Camb. Philos. Soc. [Epub ahead of print]. 10.1111/brv.12115
33
HayssenV.LacyR. C. (1985). Basal metabolic rates in mammals: taxonomic differences in the allometry of BMR and body mass. Comp. Biochem. Physiol. A81, 741–754.
34
HeusnerA. (1982). Energy metabolism and body size. I. is the 0.75 mass exponent of Kleiber a statistical artifact?Respir. Physiol. 48, 1–12. 10.1016/0034-5687(82)90046-9
35
HouC.ZuoW.MosesM. E.WoodruffW. H.BrownJ. H.WestG. B. (2008). Energy uptake and allocation during ontogeny. Science322, 736–739. 10.1126/science.1162302
36
IsaacN. J. B.CarboneC. (2010). Why are metabolic scaling exponents so controversial? quantifying variance and testing hypotheses. Ecol. Lett. 13, 728–738. 10.1111/j.1461-0248.2010.01461.x
37
IsaacN. J. B.StorchD.CarboneC. (2011). Taxonomic variation in size density relationships challenges the notion of energy equivalence. Biol. Lett. 7, 615–618. 10.1098/rsbl.2011.0128
38
JetzW.CarboneC.FulfordJ.BrownJ. H. (2004). The scaling of animal space use. Science306, 266–268. 10.1126/science.1102138
39
KolokotronesT.SavageV.DeedsE. J.FontanaW. (2010). Curvature in metabolic scaling. Nature464, 753–756. 10.1038/nature08920
40
MackayN. J. (2011). Mass scale and curvature in metabolic scaling. comment on: T. Kolokotrones et al., Curvature in metabolic scaling, Nature 464 (2010) 753-756. J. Theor. Biol. 280, 194–196. 10.1016/j.jtbi.2011.02.011
41
MakarievaA. M.GorshkovV. G.LiB. L. (2009). Comment on “energy uptake and allocation during ontogeny”.Science325:1206. 10.1126/science.1171303
42
MarquetP. A.NavarreteS. A.CastillaJ. C. (1995). Body size, population density, and the energetic equivalence rule. J. Anim. Ecol. 64, 325–332. 10.2307/5894
43
McNabB. K. (2008). An analysis of the factors that influence the level and scaling of mammalian BMR. Comp. Biochem. Physiol. A151, 5–28. 10.1016/j.cbpa.2008.05.008
44
MosesM. E.HouC.WoodruffW. H.WestG. B.NekolaJ. C.ZuoW.et al. (2008). Revisiting a model of ontogenetic growth: estimating model parameters from theory and data. Am. Nat. 171, 632–645. 10.1086/587073
45
PackardG. C.BirchardG. F. (2008). Traditional allometric analysis fails to provide a valid predictive model for mammalian metabolic rates. J. Exp. Biol. 211, 3581–3587. 10.1242/jeb.023317
46
PagelM. (1999). Inferring the historical patterns of biological evolution. Nature401, 877–884. 10.1038/44766
47
ParadisE.ClaudeJ.StrimmerK. (2004). Ape: analyses of phylogenetics and evolution in R language. Bioinformatics20, 289–290. 10.1093/bioinformatics/btg412
48
PetersR. H. (1983). The Ecological Implications of Body Size. Cambridge: Cambridge University Press. 10.1017/CBO9780511608551
49
PetzoldL. R. (1983). Automatic selection of methods for solving stiff and nonstiff systems of ordinary differential equations. SIAM J. Sci. Comput. 4, 136–148. 10.1137/0904010
50
PinheiroJ.BatesD.DebRoyS.SarkarD.R Core Team (2014). nlme: Linear and Nonlinear Mixed Effects Models. R package version 3.1-117.
51
R Core Team. (2014). R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing. Available online at: http://www.r-project.org
52
RevellL. J. (2010). Phylogenetic signal and linear regression on species data. Methods Ecol. Evol. 1, 319–329. 10.1111/j.2041-210X.2010.00044.x
53
SavageV.DeedsE. J.FontanaW. (2008). Sizing up allometric scaling theory. PLoS Comput. Biol. 4:e1000171. 10.1371/journal.pcbi.1000171
54
SavageV. M.GilloolyJ. F.BrownJ. H.WestG. B.CharnovE. L. (2004a). Effects of body size and temperature on population growth. Am. Nat. 163, 429–441. 10.1086/381872
55
SavageV. M.GilloolyJ. F.WoodruffW. H.WestG. B.AllenA. P.EnquistB. J.et al. (2004b). The predominance of quarter-power scaling in biology. Funct. Ecol. 18, 257–282. 10.1111/j.0269-8463.2004.00856.x
56
Schmidt-NielsenK. (1984). Scaling: Why is Animal Size so Important?Cambridge: Cambridge University Press. 10.1017/CBO9781139167826
57
SiegA. E.O'ConnorM. P.McNairJ. N.GrantB. W. (2009). Mammalian metabolic allometry: do intraspecific variation, phylogeny and regression model matters?Am. Nat. 174, 720–733. 10.1086/606023
58
SilvaM.DowningJ. A. (1995). The allometric scaling of density and body mass: a nonlinear relationship for terrestrial mammals. Am. Nat. 145, 704–727. 10.1086/285764
59
WestG. B.BrownJ. H.EnquistB. J. (1997). A general model for the origin of allometric scaling laws in biology. Science276, 122–126. 10.1126/science.276.5309.122
60
WestG. B.BrownJ. H.EnquistB. J. (1999). The fourth dimension of life: fractal geometry and allometric scaling of organisms. Science284, 1677–1679. 10.1126/science.284.5420.1677
61
WestG. B.BrownJ. H.EnquistB. J. (2001). A general model for ontogenetic growth. Nature413, 628–631. 10.1038/35098076
62
WhiteC.KearneyM. R. (2013). Determinants of inter-specific variation in basal metabolic rate. J. Comp. Physiol. B183, 1–26. 10.1007/s00360-012-0676-5
63
WhiteC. R.BlackburnT. M.SeymourR. S. (2009). Phylogenetically informed analysis of the allometry of mammalian basal metabolic rate supports neither geometric nor quarter-power scaling. Evolution63, 2658–2667. 10.1111/j.1558-5646.2009.00747.x
64
WhiteC. R.PhillipsN. F.SeymourR. S. (2006). The scaling and temperature dependence of vertebrate metabolism. Biol. Lett. 2, 125–127. 10.1098/rsbl.2005.0378
65
WhiteC. R.KearneyM. R. (2014). Metabolic scaling in animals: methods, empirical results, and theoretical explanations. Compr. Physiol. 4, 231–256. 10.1002/cphy.c110049
66
WhiteC. R.SchimpfN. G.CasseyP. (2012). The repeatability of metabolic rate declines with time. J. Exp. Biol. 216, 1763–1765. 10.1242/jeb.076562
67
WhiteC. R.SeymourR. S. (2003). Mammalian basal metabolic rate is proportional to body mass 2/3. Proc. Natl. Acad. Sci. U.S.A. 100, 4046–4049. 10.1073/pnas.0436428100
68
WhiteE. P.ErnestS. K. M.KerkhoffA. J.EnquistB. J. (2007). Relationships between body size and abundance in ecology. Trends Ecol. Evol. 22, 323–330. 10.1016/j.tree.2007.03.007
69
ZuoW.MosesM. E.HouC.WoodruffW. H.WestG. B.BrownJ. H. (2009). Response to comments on energy uptake and allocation during ontogeny. Science325:1206. 10.1126/science.1171949
Summary
Keywords
curvilinear scaling, metabolic ecology, metabolic theory of ecology, ecology, life history traits
Citation
Bueno J and López-Urrutia Á (2014) Scaling up the curvature of mammalian metabolism. Front. Ecol. Evol. 2:61. doi: 10.3389/fevo.2014.00061
Received
30 July 2014
Accepted
16 September 2014
Published
06 October 2014
Volume
2 - 2014
Edited by
Carlos Alonso Alvarez, Consejo Superior de Investigaciones Cientificas, Spain
Reviewed by
Craig White, The University of Queensland, Australia; Matthew R. E. Symonds, Deakin University, Australia
Copyright
© 2014 Bueno and López-Urrutia.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Juan Bueno, Centro Oceanográfico de Gijón, Instituto Español de Oceanografía, Avda. Príncipe de Asturias 70 bis, Gijón 33212, Spain e-mail: jbuenopardo@gmail.com
†Present address: Juan Bueno, Departamento de Biologia, Centro de Estudos do Ambiente e do Mar, Universidade de Aveiro, Aveiro, Portugal
This article was submitted to Behavioral and Evolutionary Ecology, a section of the journal Frontiers in Ecology and Evolution.
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