ORIGINAL RESEARCH article

Front. Environ. Sci., 31 July 2025

Sec. Environmental Informatics and Remote Sensing

Volume 13 - 2025 | https://doi.org/10.3389/fenvs.2025.1599320

Comprehensive data aleatory uncertainty propagation in regression random forest using a Monte Carlo approach: a struggle with incomplete data provision using a case study on probabilistic soil moisture regionalization

  • 1. Department Monitoring and Exploration Technologies, UFZ – Helmholtz Centre for Environmental Research GmbH, Leipzig, Germany

  • 2. Department of Environmental and Engineering Geophysics, University of Tübingen, Tübingen, Germany

Abstract

Data uncertainty never decreases along processing chains and should always be reported alongside processing results. In this study, we attempt to propagate aleatory data uncertainty through a multiple regression analysis to generate regionalized probabilistic soil moisture maps. We employ a non-parametric solution for multiple regression by means of random forests within a Monte Carlo framework. Our input data comprise sparse soil moisture data and spatially dense auxiliary soil and topographic maps, which serve as response and predictor variables in our regression model, respectively. While the methodology is technically straightforward, challenges arise due to incomplete communication of data uncertainty by data providers. This results in knowledge gaps that must be filled by subjective assumptions rather than data-driven insights. We highlight the issues that hinder straightforward uncertainty propagation, ultimately making our final uncertainty quantification of regionalized soil maps an optimistic estimate. Additionally, we sketch how existing uncertainty classification schemes could help data providers deliver quantified uncertainties with their data, enabling users to more accurately assess and report uncertainties in their derived data products.

1 Introduction

Soil moisture (SM) plays a crucial role in understanding hydrological, energy, ecological, and climate processes on regional and global scales (e.g., Babaeian et al., 2019; van Westen et al., 2008; Williams et al., 2012). Traditional SM observations have been limited to sub-catchment study areas, typically covering up to a few square kilometers. These observations rely mainly on in situ probing techniques such as soil sampling or time domain reflectometry. Alternatively, remote sensing products provide a broader overview of surface SM conditions but usually with coarse spatial resolution. In recent years, cosmic-ray neutron sensing (CRNS) has emerged as an effective method for observing root-zone SM at the catchment scale, encompassing study areas of several hundred square kilometers. CRNS measurements are sparse, integrating SM over a radius of approximately 200 m with penetration depths reaching several decimeters (e.g., Desilets et al., 2010; Köhli et al., 2015). When mounted on mobile vehicles operating along roads or rails, CRNS can provide valuable SM data along the travel routes (e.g., Chrisman and Zreda, 2013; Fersch et al., 2018; Schrön et al., 2018; Jakobi et al., 2020; Schrön et al., 2021; Altdorff et al., 2023).

The sparse nature of CRNS SM data necessitates a map generation process to produce SM distributions on dense spatial grids. This has been successfully achieved by fusing CRNS data with densely sampled auxiliary data sets (Heistermann et al., 2021; Dega et al., 2023; Brown et al., 2023), e.g., through multiple regression techniques (e.g., Howarth, 2001; Kleinbaum et al., 2013). In multiple regression, data are quantitative entities of coded information and they are incomplete without an associated quantified uncertainty (JCGM, 2008a). Uncertainty quantification (e.g., Sullivan, 2015) provides essential information regarding information coding precision and accuracy, thereby defining the limits for reliable information retrieval from data.

The importance of uncertainty quantification is well-recognized. However, large portions of the scientific community still operate under deterministic assumptions (Pelz et al., 2021), often neglecting the explicit inclusion of quantified uncertainty in SM map generation (e.g., Schröter et al., 2017; Brown et al., 2023). Even when uncertainty quantification is attempted, the chosen methodology often considers only selected aspects of the total uncertainty (e.g., Lele, 2020), leading to potentially over-optimistic assessments with dependency on the chosen methodology (Dega et al., 2023). Additionally, the communication of uncertainties frequently suffers from incompleteness, imprecision, and inaccuracies, necessitating subjective interpretations by users (Beven, 2016). This subjective supplementation introduces ambiguity, thereby undermining the fundamental objective of uncertainty quantification.

To address these issues, a robust and comprehensive approach to uncertainty quantification and communication is necessary. This ensures that soil moisture regionalization results are reliable and useful for interpretation, decision-making, computational modeling, and pattern recognition analyses. It starts with a consistent reflection about uncertainty types present in SM and auxiliary data and how these uncertainties propagate into the final SM map. Competing general uncertainty classification systems exist (e.g., Beven, 2016; Pelz et al., 2021; Gault and Albaraghtheh, 2023). We employ here a system differentiating aleatory, epistemic (Kiureghian and Ditlevsen, 2009) and ontological (Lane and Maxfield, 2005) uncertainty. This system has been found useful for geoscientific data in the past (e.g., Beven, 2016; Paasche et al., 2022; Asadi, 2023). Since the exact definitions of the three uncertainty types may slightly differ, we summarize in Table 1 how we use them in our study. When using multiple regression techniques to integrate sparse SM data with densely mapped auxiliary data, we strive to transform epistemic uncertainty in the sparse SM data into quantifiable aleatory uncertainty integrating the aleatory uncertainty of the CRNS and auxiliary data (see Table 1). This can be done by embedding the multiple regression in a Monte Carlo approach as used by Dega et al. (2023). This is a favorable choice when the probability density distributions quantifying data aleatory uncertainty are non-normally distributed or of complex shape (JCGM, 2008b).

TABLE 1

UncertaintyAleatoryEpistemicOntological
Caused byLimited accuracy and precisionBand-limited methodology resulting in knowledge gaps in the information processing chain (information coding to data, data transmission, receiving, storage, data decoding to information)Inappropriateness of methodology
Refers to• A datum (precision and accuracy related to a datum independent of its relation to other data)
• A data set (quantitative interrelations between spatially/temporally connected data)
• A datum (i.e., when not providing quantified precision and accuracy information with a datum)
• A data set (i.e., when not providing quantitative statements about relations between data forming a set; e.g., spatial and/or temporal resolution)
• A methodology (when not providing precise and accurate information about a methodology and its uncertainty, e.g., by gaps in reasoning or generalization)
• A methodology
Consciously recognizedYesYesNo
QuantifiableYesNoNo
Reducible byIndividual approachIncrease observational/computational accuracy and precisionReduce information processing chain loss (knowledge gaps)Methodological improvement
Type conversionNot desirableBy fusing information of database Di with those of another database Dj (co-located in time and/or space) or a model
• When learning a data-driven non-deterministic linkage model f controlled by the databases and their aleatory uncertainties Ui and Uj
Di ± Ui = f (Dj ± Uj) the epistemic uncertainty associated with Di is reduced by adding information Dj and aleatory uncertainty Uj
• Filling knowledge gaps in Di by transferring a model over time and/or space reduces epistemic uncertainty associated with Di by adding ontological uncertainty
By becoming aware of and varying methodological choices
• Participating observation of methodological non-experts can raise the awareness of unrecognized methodological decision points and turns ontological uncertainty into epistemic uncertainty
• Methodological variation if equally sound alternatives are available; Stochastic analysis over uncertainty related to methodological choices converts ontological uncertainty into aleatory uncertainty

Types of uncertainty (Asadi, 2023, modified).

We utilize a non-parametric multiple regression approach, specifically regression random forest (RF; e.g., Breiman, 2001), to regionalize CRNS SM data. To account for the aleatory uncertainty associated with the data, we use the RF regression within a Monte Carlo (MC) framework. This methodology is applied to a CRNS SM data set provided by a research institution and auxiliary data sourced from a science-based foundation and governmental authorities.

While both regression RF and MC methods are well-established, their application to probabilistic SM regionalization with full consideration of aleatory data uncertainty propagation is straightforward. However, our study highlights a significant challenge: the current practices of uncertainty communication by data providers hinder the seamless application of existing uncertainty quantification methodologies.

Despite these challenges, we successfully generate probabilistic SM maps that individually and jointly illustrate the contributions of aleatory uncertainty from both CRNS and auxiliary data sets to SM regionalization. Our findings not only pinpoint specific issues in the uncertainty communication practices of the data providers we utilized but also offer general recommendations for improving future uncertainty reporting. Since ontological uncertainty is not included in our analyses, our uncertainty quantification should be regarded as a potentially optimistic estimate. Nonetheless, it represents a more comprehensive approach than usually done and extends the work of Dega et al. (2023).

We begin by introducing the survey area, available data sets, and the uncertainty information provided. We detail and illustrate our methodology for incorporating data aleatory uncertainty into RF regressions within a MC framework. We critically evaluate our results, discuss the limitations of our uncertainty quantification, and finally propose recommendations to improve such analyses through enhanced uncertainty communication.

2 Study area and database

2.1 The Müglitz catchment and its vicinity

The Müglitz catchment is located in the federal state of Saxony, eastern Germany, covering an area of 209 km2 (Figure 1a). The Müglitz river drains the eastern part of the Ore Mountains, flowing north from the German-Czech border into the Elbe River, south of the city of Dresden. The river originates in the Czech Republic at an altitude of 780 m and joins the Elbe at 113 m above sea level. It has a total length of approximately 50 km, with the first 400 m running through the Czech Republic.

FIGURE 1

The landscape is characterized by expansive rolling plateaus and narrow valleys with steep slopes. More than 50% of the catchment consists of pastures and arable land on plateaus covered by thin soils. Around one-third of the area is forested (Figure 1b), primarily along the steep valley slopes.

The Müglitz catchment has been extensively studied in recent years (e.g., Tarasova et al., 2020; Hannemann et al., 2022; Rink et al., 2022; Wieser et al., 2023) as it is one of the intensive test sites within the Modular Observation Solutions for Earth Systems (MOSES) initiative (Weber et al., 2022). The Müglitz catchment and various data acquisition and modeling initiatives have been visualized in a virtual geographic environment, available at https://www.youtube.com/watch?v=plPEtkkR0pQ (last accessed 19 February 2025; Rink et al., 2022).

Our study area is bounded to the south by the German-Czech border and extends around the German section of the Müglitz catchment, which accounts for approximately 95% of the total Müglitz catchment (Figure 1). The survey area includes parts of the Ore Mountains and the Elbe Sandstone Highlands, situated west and east of the Müglitz catchment, respectively. North of the catchment, the city of Dresden lies within the Dresden Basin, a 10 km-wide valley of the Elbe River stretching northwest. The survey area also includes parts of the Lusatian Plateau to the north and the West Lusatian Hill Country and Uplands to the northeast.

2.2 The auxiliary data

2.2.1 Soil data

We use maps of physical and chemical soil state variables, including bulk density, sand fraction, clay content, and soil organic carbon, within the 5–15 cm depth range. The data are mapped on a regular grid with a 250 m node spacing, with gaps in urban areas. The soil data were obtained from www.soilgrids.org (accessed 15 October 2024), a service maintained by ISRIC–World Soil Information, an independent, science-based foundation.

The soil maps are generated using non-parametric multiple regression through quantile RFs, combining sparse soil profiles with multiple layers of densely mapped auxiliary data (Poggio et al., 2021). For each state variable, maps are provided for both the median (quantile q0.5) and mean values at each grid node. Additionally, quantile maps for q0.05 and q0.95 define the lower and upper bounds of a 90% prediction interval. Corresponding maps are shown in Figure 2.

FIGURE 2

An uncertainty map is also available, quantifying the ratio q0.5/(q0.95 - q0.05). However, we do not display or use this uncertainty layer here, as it is a linear combination of the provided quantile maps and does not offer additional independent information. The quantile and mean maps in Figure 2 are sparse representations of probability density functions (PDFs) for each grid cell resultant from quantile RFs. Differences between mean and median maps indicate skewed PDFs. This is further supported by different absolute distances between q0.05 and q0.95 from q0.5 (see, for example, Figure 2a).

2.2.2 Topographic data

In addition to the soil maps, we also obtained a digital terrain model with a 200 m grid spacing (DGM200), provided by the German Federal Agency for Cartography and Geodesy (BKG; https://gdz.bkg.bund.de/index.php/default/digitales-gelandemodell-gitterweite-200-m-dgm200.html, accessed 15 October 2024). According to the BKG, the positional precision/accuracy is ±5 m, while the elevation precision/accuracy is ±10 m (BKG, 2021). Note that in BKG (2021), the German word “Genauigkeit” is used, which does not distinguish between precision and accuracy. The DGM200 was derived from the DGM5 (a 5 m grid terrain model) by selecting the relevant grid points. The DGM5 data sets were originally generated by state surveying authorities and later merged by the BKG into a homogeneous, nationwide data set (BKG, 2021).

The Landesamt für Geobasisinformation Sachsen (GeoSN) is the state surveying authority for Saxony, where our survey area is located. According to GeoSN, their digital terrain models are produced according to product and quality standard for digital terrain models (AdV, 2021), established by the AdV (Working Group of Surveying Administrations of the Federal and State Governments). These models are derived through LiDAR data interpolation, and their elevation precision/accuracy matches that of the LiDAR data. The elevation uncertainty of the LiDAR data is given as ±0.15 m, representing two standard deviations (https://www.landesvermessung.sachsen.de/fachliche-details-8645.html, accessed 2 January 2025).

In AdV (2021), certain data sets are listed meeting the standards defining the product and quality characteristics of digital terrain models within the official German surveying system (ATKIS-DGM; AdV, 2021). Among the listed products are DGM5 data sets from the federal states and the DGM200 data set from the BKG. The elevation precision/accuracy of georeferenced raster elements in digital terrain models is specified as (i) flat to gently sloping, open terrain: ±10 cm + 5% of the raster width and (ii) steep terrain with dense vegetation: ±10 cm + 20% of the raster width.

For a 1 m grid terrain model (DGM1), this corresponds to ±0.15 m and ±0.3 m, depending on terrain slope and vegetation. For a DGM5, the expected uncertainty ranges from ±0.35 m to ±1.1 m, which is significantly higher than the ±0.15 m stated by GeoSN. Surveying authorities in other federal states report these higher uncertainty values for their DGM5 data sets, explicitly stating that they represent two standard deviations (e.g., https://www.lvermgeo.sachsen-anhalt.de/de/gdp-dgm-dom-lsa.html, accessed 2 January 2025). For the DGM200 from BKG, this method results in elevation uncertainty (two standard deviations) of ±10.2 m in flat open terrain and ±40.2 m in steep terrain with dense vegetation. It is explicitly stated, that the measurement values used as the basis for deriving the raster element position have positional inaccuracies, which are accounted for in the elevation accuracy specification of the raster element position, already. This would make an additional statement about position precision/accuracy as provided by the BKG for the DGM200 unnecessary. Figure 3 shows the DGM200 mapped on the same grid previously used for the soil data.

FIGURE 3

2.3 The soil moisture data

CRNS measurements were conducted on 16 July 2019, between approximately 6:25 a.m. and 11:05 a.m. No precipitation was recorded in the survey area during this period. The system was mounted on a car (e.g., Schrön et al., 2018) that traveled along parts of the public road network within and near the Müglitz catchment (Figure 4a). The route was chosen as a compromise to cover large distances across the catchment in the short available time frame, and the driving speed was kept as constant as possible without compromising traffic safety or the driver’s well-being.

FIGURE 4

Neutron counts were integrated over 10-s intervals, resulting in 1,682 readings. As detailed in Dega et al. (2023), a non-linear function was used to convert the measured neutron counts into gravimetric SM. This processing skewed the normally distributed aleatory uncertainty of neutron count rates into asymmetric distributions. The uncertainty in gravimetric SM was characterized by merging the left- and right-hand sides of two different normal distributions at their common mean. This resulted in upper and lower standard deviations, σup and σlow, respectively, associated with a mean value μ, which represents the measured gravimetric SM (Figures 4a–c). The upper standard deviation exceeded the lower one. For high mean values, the upper standard deviation was clipped to ensure that μ + 2σup ≤ 1. Similarly, μ - 2σlow ≥ 0 (Figure 4d). While the lower cutoff credits a physical limitation, the motivation of the data provider for the upper cutoff appears empirical.

3 Methodology

Our methodology is summarized in the flowchart shown in Figure 5. We walk through the diagram by discussing the processing branches related to the auxiliary data and the soil moisture data separately. Please note that the final two steps in the flowchart (evaluation and visualization) correspond to the content presented in the Results and Discussion sections.

FIGURE 5

3.1 Aleatory uncertainty in auxiliary soil data

The provided quantile and mean values for each map grid node offer a sparse representation of the PDFs derived from quantile RFs. To quantify the aleatory uncertainty at each grid node, we need to reconstruct the full PDF or its integral, the cumulative distribution function (CDF).

However, with only three given quantiles (q0.05, q0.5, and q0.95) there are only three support points available for the PDF or its corresponding CDF. This introduces significant epistemic uncertainty in how these points should be connected, resulting in an infinite number of possible PDFs or CDFs. At this point the data provider does not match the requirements of aleatory uncertainty communication (Table 1). Consequently, this epistemic uncertainty makes it impossible to quantify aleatory data uncertainty based on the data alone.

However, we replace epistemic uncertainty with beliefs, converting it into ontological uncertainty (Table 1), which remains outside the scope of our subsequent analyses. To address this, we apply the philosophical principle known as Occam’s razor and determine that the points defining the CDF are connected by straight lines – the simplest point connectors according to our belief. Additionally, we determine lower and upper limits for the CDFs, setting them at 20 cg/cm3 and 200 cg/cm3, respectively, based on Panagos et al. (2024).

Since the CDF must satisfy not only the chosen limits and the three given quantiles but also the provided mean value, we formulate an optimization problem to find a suitable CDF. To maintain simplicity, we limit it to just two model parameters. These parameters represent additional points that help define the shape of the CDF beyond the given support points and chosen limits.

Figure 6 illustrates different setups for the bulk density of the central map grid node at 836.5 km East and 5,648 km North. To determine the optimal CDFs that meet the limits, support points, and mean value, we employ particle swarm optimization (PSO; Kennedy and Eberhart, 1995). Our swarm consists of 100 particles. We follow Tronicke et al. (2012) and chose an inertia weight of 0.7298 and cognitive and social learning rates of 1.4962. The algorithm terminates after 300 iterations or when the absolute difference between the measured and modeled mean value is less than 1e-9. We initialize the PSO four times and show the resulting solutions in Figure 6.

FIGURE 6

In Figure 6a, we present the solutions obtained when allowing the model parameters to vary freely within the intervals (q0, q0.05) and (q0.95, q1). All four runs yield nearly identical results but fail to produce CDFs that match the given mean value. The model parameters tend to converge toward extreme solutions positioned at the edges of the permitted intervals.

To address this, we adjust the model setup by placing the model parameters at the midpoint between the given support points, allowing them to vary either horizontally or vertically (Figures 6b,c). All four runs produce CDFs that satisfy both the support points and the mean value. However, the resulting CDF shapes vary significantly, indicating the presence of multiple deep local optima that still provide a sufficient data fit.

To improve reproducibility, we introduce a penalty term to constrain the smoothness of the CDF and combine this with the setup shown in Figure 6c. This adjustment leads to more stable solutions (Figure 6d), ensuring reasonable reproducibility while still maintaining consistency with the given mean value.

We apply this setup to compute bulk density CDFs for each grid node, achieving solutions where the mismatch between measured and modeled mean values remains below 2e-7. Similarly, we extend this approach to sand fraction, clay content, and soil organic carbon data, as shown in Figure 2. Through empirical analysis, we determine the lower limits to be 0.7⋅q0.05, 0.5⋅q0.05, and 0.5⋅q0.05, respectively. The upper limits for all three data sets are set to 1.3⋅q0.95.

3.2 Aleatory uncertainties in auxiliary topographic data

By providing a central value and a double standard deviation, the shape of the PDF is well-defined as a normal distribution, with its model parameters fully specified. However, the standard deviation is not explicitly given for each map grid node. Instead, it is differentiated into two distinct values based on topographic slope and dense vegetation cover. The actual function governing this differentiation is only described qualitatively using definitions such as “flat to gently sloping, open terrain” and “steep terrain with dense vegetation”. However, no quantitative details are provided regarding the transition between these categories or how slope and vegetation precisely influence the double standard deviation. This epistemic uncertainty requires filling the knowledge gap with a methodology that relies more on beliefs than on concrete knowledge and fails to provide quantitative data uncertainty statements (Table 1). As a result, epistemic uncertainty is replaced with ontological uncertainty, which remains outside the scope of subsequent analyses.

Furthermore, there is uncertainty regarding how to integrate the uncertainty information provided by BKG (2021) and AdV (2021), both of which are claimed to apply to the DGM200. Additionally, no clarification is given on how accuracy and precision contribute to the reported double standard deviations. Paasche and Schröter (2023) demonstrated that spatial noise fields following a normal distribution, with varying spatial correlation wavelengths but the same mean and double standard deviation, can be applied to digital terrain data while still adhering to the given uncertainty definitions. However, the way these noise fields propagate through subsequent analyses differs.

Due to the lack of information about spatial uncertainty correlation, we address this epistemic uncertainty by assuming no correlation between grid nodes. Treating double standard deviations in the range of [10.2, 40.2] m as spatially uncorrelated uncertainty in the digital terrain model would lead to topographic slopes and aspects that are largely random, which would generally question the value of the DGM200. To mitigate this, we lower the maximum accepted double standard deviation to 10 m, following BKG (2021), assuming this value represents a maximal spatially uncorrelated uncertainty.

When computing PDFs for each map grid node of the digital terrain model, we interpret “dense vegetation” as forest. Using CORINE land cover data (Figure 1b), we derive a binary mask F that classifies mixed forest, coniferous forest, and broad-leaved forest as areas of dense vegetation within the survey region (Figure 7a).

FIGURE 7

Additionally, we generate a topographic slope map S of the survey area (Figure 7b) from the digital terrain model (Figure 3), applying a deterministic approach. We define an empirical mixing model that combines slope and dense vegetation to compute the elevation uncertainty uj for the jth map grid nodeu0j is the base uncertainty for the jth grid node referring to open flat terrain and defined aswith rj being a random number drawn from the standard normal distribution and σ0 being the standard deviation of 1.5 m uFj is the forest related uncertainty determined aswith σF = 4 m and fj ∈ F. uSj is the slope related uncertaintywith σ1 = 1.5 m dj realizes a slope related scaling bywith sj ∈ S and sL = 50%. Using Equations 15, we can discretely sample the PDFs for each grid node of the digital terrain model, assuming no spatial correlation, and compute the mean elevation values along with their corresponding standard deviations (Figure 8a). The standard deviations σ0, σF, and σS are empirically chosen and preserve the ratio given by the data provider that σF+σS ≈ 4⋅σ0 for steep forested terrain. The resultant mean double standard deviation of the map is approximately 8 m and falls slightly below the assumed maximal uncorrelated double standard deviation of 10 m.

FIGURE 8

By randomly sampling from these PDFs, we derive probabilistic topographic slope and aspect information, as well as their associated standard deviations. These additional topographic data sets, together with topographic elevation and the soil maps, serve as auxiliary data in our multiple regression analysis. Since RF regression assumes that data are projected on a linear axis, we transform the circular topographic aspect information by splitting it into its sine and cosine components, representing the east-west and north-south aspect directions, respectively (Figures 8b–d).

3.3 CRNS data uncertainty and its relation to the information fusion methodology

The 1,682 soil moisture readings fall within 419 map grid cells of the auxiliary data, with the number of readings per grid cell varying. We merge the PDFs of gravimetric SM for each grid cell.

Since the gravimetric SM PDFs are defined by a mean value and lower and upper standard deviations, merging them requires linking two normal distributions with different standard deviations at their common mean value. One approach is to generate continuous, smooth, skewed PDFs, as shown in Figure 9a. However, in these skewed distributions, the mean value no longer aligns with the most likely value, which was initially the common mean of the two individual normal distributions.

FIGURE 9

To preserve the given definition, where PDFs are characterized by a mean value and two distinct standard deviations, we scale the left and right sides of the common distributions differently. This results in discontinuous, non-smooth PDFs at their mean value, as seen in Figure 9b which are outside the strict definitions of distributions reasonably described by mean values and standard deviations. However, their mean values and lower and upper standard deviations can be computed anyway and remain consistent with the provided data. The blue curve in Figure 9b represents a more concentrated distribution than the black curve, indicating lower uncertainty. To account for this reduced uncertainty, we scale both PDFs so that the area under each curve remains equal (Figure 9c). By summing the scaled PDFs, we obtain an integrated PDF that quantifies gravimetric SM uncertainty for the grid cell based on all CRNS measurements falling therein.

3.4 Random forest regression and Monte Carlo sampling

We use multiple nonlinear regression (e.g., Howarth, 2001; Kleinbaum et al., 2013) to regionalize the sparse soil moisture data. This method relates a one-dimensional response variable (also referred to as dependent variable, target variable, label data), y (size m × 1), to a densely sampled multi-dimensional predictor (also referred to as independent variable, feature data, explanatory variable), X (size n × t), where t = 8 is the number of vectorized auxiliary data sets (Figures 2, 8) available at n co-located map grid cells.

To set up a multiple regression of the form y = g (X, U) (Arens et al., 2015), SM data must be available for m grid cells. U is a disturbance matrix capturing uncertainty in X and y. Here, we limit it to aleatory uncertainty.

With m co-located pairs of X and y, we compute a regression model g by means of regression RF to estimate SM across all n nodes. To account for U, we embed the regression in a Monte Carlo framework, repeatedly sampling m co-located data sets from y and X along with their PDFs or CDFs. A regression model is then computed for each sampled pair of y and X.

To determine a regression model g, we use a RF algorithm (Breiman, 2001), that makes no assumptions about the model’s form. As with any regression method, g depends on parameter choices, including numerical settings (e.g., the number of trees) and conceptual decisions (e.g., the objective function). Ontological uncertainty associated with these choices is not part of our analyses.

We generate bootstrapped data sets using replacement sampling (Horowitz, 2019), with an in-bag fraction of 0.66. At each tree split, the optimal predictor is selected from two randomly chosen auxiliary data sets in X. In some cases, the best results were obtained using only one randomly selected auxiliary variable when combined with more than 500 trees, suggesting a relatively noisy database.

Of the 419 map grid nodes with available soil moisture data, 64 were excluded due to missing auxiliary information, leaving 355 nodes. These were divided into a learning set (m = 319) and a test set (m* = 36), with the test set held out from model training. To ensure a fair comparison with interpolated (and not extrapolated) predictions, the test set includes only map nodes within the convex hull of the m learning nodes in predictor space.

Settings were chosen based on empirical testing of the first 10 Monte Carlo samples considering the aleatory uncertainty of y and X. Figure 10a shows the mean squared error as a function of the minimum allowed leaf size. Since we do not impose a fitting limit, the random forest likely overfits when using a minimal leaf size of 1. However, as results for leaf sizes of 1 and 2 largely overlap, we select a minimum leaf size of 5. Stable solutions are achieved when the random forest consists of 200 trees (Figure 10a).

FIGURE 10

The relative importance of predictors depends on the degree of data fitting, which is controlled by the minimum leaf size (Figure 10b). Topographic slope and aspect have low importance when the minimum leaf size is set to 5. However, aspect data contribute positively when the minimum leaf size is increased to 50, suggesting their relevance at early tree splits. In contrast, variables like sand fraction gain importance later in the tree growth process, primarily during fine-tuning at deeper splits.

Since auxiliary data sets that are rarely used in splitting decisions contribute minimally to the uncertainty of the random forest regression model, we do not discard them a priori. Feature importance varies with Monte Carlo sampling of y and X, meaning a strict cutoff would introduce ontological uncertainty and could lead to the unintended exclusion of useful predictors in some Monte Carlo runs.

Figure 10c presents a scatter plot of predicted versus measured soil moisture. The predicted values show a reduced range, indicating imperfect leaf separation and significant scattering within the leaves, which suggests a noisy database. The slopes of linear models fitted to the measured and predicted data are clearly lower than 1 (Table 2).

TABLE 2

ModelParameterLearning data setTest data set
Linear model fitting predicted versus measured dataSlope0.360.12
Intercept0.100.13
Residual sum of squares RSS12.151.61
Total sum of squares TSS23.931.73
Coefficient of Determination R20.490.07
Scaled R20.40

Parameters of a linear model fitting predicted versus measured soil moisture data. The linear model has been fitted to the results of the first 10 Monte Carlo runs.

For the learning data, the coefficient of determination ( = 0.49; Table 2) indicates moderate explanatory power, suggesting some variance remains unexplained by the model. Speculating, this might again possibly indicate noisy data and might have improved when additionally considering meteorological variables, such as precipitation, that are known to influence soil moisture. For the test data set, = 0.07, which suggests a poor model. However, directly comparing both R2 values is not entirely fair, as the test data set has a significantly reduced range due to the selection of points only within the convex hull, meaning for the total sum of squares TSST << TSSL.

The aleatory uncertainty in the test data should be comparable to that in the learning set (and therefore also their normalized residual sum of squares RSST and RSSL) unless there is a systematic correlation with the convex hull in the predictor space, which we did not find. When scaling the RSST by multiplication with m/m* to account for the smaller size of the test sample, we get RSSTscaled = 14.27, slightly higher than RSSL = 12.15. This confirms a lower performance for the regression model on the test data set when relating RSSTscaled and TSSL, resulting in a scaled = 0.4, which still suggests moderate performance, albeit weaker than for the learning data.

We continuously perform MC sampling, generating regression models for each pair of y and X by randomly drawing from their probability density functions (PDFs). These models are then applied to compute gravimetric SM maps. To assess the representativeness of the generated ensemble, we conduct an a posteriori correlation analysis (Tronicke et al., 2012, particularly Equations 35 therein). Specifically, we randomly select 1,000 grid nodes and calculate the grid node correlation matrix over a set of SM maps. Figures 11a,b present the correlation matrices P19 and P19456, corresponding to the first 50 of the 1,000 selected grid nodes, calculated over 19 and 19,456 SM maps, respectively. While P19 displays a seemingly random mix of positive and negative correlations, P19456 reveals more systematic patterns, with some grid nodes showing consistently positive correlations and others showing little to no correlation, but almost no negative correlations. The positive correlations occur because certain grid nodes are frequently assigned to the same leaf, regardless of MC sampling variations.

FIGURE 11

Figures 11c–e illustrate the differences between correlation matrices computed from pairs of SM map subsets. For each comparison, the number of maps used to compute the correlation matrices is doubled. As the ensemble size increases, differences between correlation matrices diminish, indicating increasing statistical stability of the ensemble (see red bars in Figure 11f). We extend our computations to an ensemble of 20,000 soil moisture maps, ultimately achieving a mean absolute correlation matrix difference of 0.0057.

Following the procedure outlined above, we generate additional ensembles of soil moisture maps, each accounting for different sources of uncertainty. One ensemble is computed while ignoring the aleatory uncertainty in the soil moisture data (y), and another while ignoring the uncertainty in the auxiliary data (X). For ensemble sizes of 20,000 soil moisture maps, the mean absolute differences between correlation matrices remain below 0.006, confirming the statistical stability of the results (Figure 11f).

4 Results

Figure 12 depicts the computed SM maps. Figure 12a shows the deterministic solution, where aleatory uncertainty in the CRNS SM (y) and auxiliary (X) data is ignored. Since no MC sampling was performed, this approach does not provide quantified uncertainty estimates for the map.

FIGURE 12

Figures 12b,c illustrate the results from 3 MC ensembles (i) ignoring uncertainty in X, (ii) ignoring uncertainty in y, and (iii) considering uncertainty in both y and X, respectively. For each ensemble, we display the q0.5 map, which represents the median soil moisture value at each grid node. This is supplemented with percentile ranges, showing the spread between q0.5 and q0.05, q0.95 and q0.5, and q1.0 and q0.0 to provide a sense of uncertainty in the soil moisture distribution.

The overall pattern in the deterministic and q0.5 soil moisture maps (Figures 12a,b) is similar. The lowest soil moisture values are observed in the Dresden Basin, extending from the center of the map toward the northwest. In contrast, the highest values appear in the southwest, aligning with the high-elevation areas of the Ore Mountains. Since both maps were generated ignoring the aleatory uncertainty in the auxiliary data, their only difference is that the q0.5 map (Figure 12b) incorporates the uncertainty of the soil moisture data, whereas the deterministic map does not. The q0.5 map also exhibits a slightly damped amplitude compared to the deterministic map. The percentile range maps in Figure 12b reveal a clear positive correlation between uncertainty and SM values. This reflects the propagation of aleatory uncertainty in the SM data, which is itself correlated with SM levels (see Figure 4d).

When aleatory uncertainty in the auxiliary data is considered, the pattern of the q0.5 SM map changes. The previously distinct high soil moisture area in the southwest becomes more uniform, merging into a broader region of elevated soil moisture across the mountainous and hilly areas. The corresponding uncertainty distribution is also smoother and shows a slight correlation with topographic elevation. However, the sharp spatial variations in uncertainty seen in the topographic data (caused by vegetation differences) or in certain soil maps (see Figures 2, 8) are largely smoothed out.

When both SM and auxiliary data uncertainties are included, the percentile ranges further increase, leading to an even smoother representation. Simultaneously, the q0.5 SM map’s amplitude is further damped. Across much of the study area, the 90% prediction interval (q0.05q0.95) does not fall below 0.06. Given that median SM values mostly range between 0.1 and 0.18, this suggests that, with propagated aleatory uncertainty, the SM regionalization can reliably distinguish only broad wet and dry conditions, while finer-scale differentiation remains highly uncertain.

5 Discussion

Considering aleatory uncertainty in the auxiliary data can alter the spatial pattern of median SM. As aleatory uncertainty increases, the risk of regression shrinkage also grows, often due to imperfect node separation or high variability within leaves. MC sampling does not help mitigating this, resulting in median SM maps with reduced amplitude. However, when interpreted alongside their corresponding uncertainty estimates, these maps still provide some insights while minimizing the risk of overinterpretation.

Addressing this amplitude reduction is challenging. A straightforward approach is to apply a posteriori scaling, adjusting the SM maps by computing an optimal linear correction model for each map in the ensemble based on the match between predicted and measured SM. Figure 13a demonstrates this method for the ensemble that includes aleatory uncertainty in both y and X (Figure 12d). While this adjustment increases the range of the median map and its uncertainty bounds, it also introduces negative SM values in approximately 27% of the grid nodes, primarily affecting the Dresden Basin and the Lusatian Plateau in the north.

FIGURE 13

For each map in the ensemble, we assess which grid nodes fall inside the convex hull of the predictor space defined by the learning data set. Grid nodes inside the convex hull require interpolation, while those outside require extrapolation, introducing increased ontological uncertainty - a factor not captured in our quantitative uncertainty propagation. Figure 13b illustrates the relative frequency of each grid node being inside the convex hull. The results indicate that our SM data set is not representative for certain areas, particularly the Dresden Basin and the Lusatian Plateau at the northern edge of the map, as these regions consistently require extrapolation. Beyond the sampling locations and their immediate surroundings, relative frequencies rarely exceed 0.5, suggesting that extrapolation dominates across most of the survey area.

We use the data shown in Figure 13b to generate binary masks, which are then overlaid on the median soil moisture map in Figure 13a. The binarization process uses increasing thresholds of >0, >0.1, and >0.5. As the threshold increases, larger regions of the survey area are blanked out (Figure 13c).

When grid nodes requiring 100% extrapolation are excluded, the fraction of grid nodes with negative SM values is reduced to 7.5%. The Dresden Basin and Lusatian Plateau in the northern part of the map are now blanked out. With thresholds >0.1 and >0.5, the fraction of negative values decreases further to 0.6% and 0.3%, respectively. This illustrates that the problem is largely due to ontological uncertainty, by applying our SM data to regions where they are not representative. For a threshold >0.1, even the northern and southern parts of the Müglitz catchment are no longer covered, raising questions about the representativeness of the CRNS survey for this area which was a major survey goal under the MOSES activities. Focusing only on areas where interpolation dominates reduces the mapped coverage to only 1.8% of the grid nodes, representing a very sparse sample of SM data across the survey area.

In future CRNS surveys, we recommend enhancing the information return of the CRNS data set by analyzing the predictor variables intended for regionalization prior to data acquisition. Schröter et al. (2015) successfully demonstrated that such preparatory efforts can result in highly efficient sparse sampling schemes with substantial information gain. However, in the case of mobile CRNS data acquisition, the selection of sampling locations is constrained by the road network, which might limit the efficiency of any optimized sampling design compared to those reported by Schröter et al. (2015).

6 Conclusion

We used regression RF embedded within a MC approach to propagate aleatory uncertainty from densely sampled auxiliary data sets and sparse gravimetric SM data into regionalized SM maps. However, method-inherent ontological uncertainty, such as uncertainties regarding the general suitability of our regression and MC methodology, falls outside the scope of our analysis and is assumed to overlay the considered aleatory uncertainty.

Despite the straightforward nature of our methods, the quantified uncertainties in our SM maps remain only estimates with unquantified residual uncertainty. Nonetheless, our results demonstrate that uncertainties in both response and predictor variables can significantly influence regionalized soil moisture and exhibit distinct spatial patterns. A true uncertainty quantification was not possible due to epistemic uncertainty in the communication of auxiliary data providers. This forced us to fill knowledge gaps with assumptions, introducing additional ontological uncertainty and ultimately preventing a purely quantified propagation of aleatory data uncertainty.

Problems arose due to the data providers’ insufficient consideration of the aleatory uncertainty associated with the data sets. The providers of soil maps and topographic data did not quantify the spatial relationships within their maps, requiring us to fill this gap, e.g., by assuming spatially uncorrelated uncertainty. Although the soil maps included quantitative uncertainty information for each datum, the provided uncertainty data were so sparse that we had to make additional assumptions about the smoothness of the PDFs. The topographic data, on the other hand, were supplied with well-defined PDF shapes assumed to follow normal distributions, but not at a datum-specific level. Instead, qualitative statements regarding uncertainty were provided based on slope and vegetation, leaving it to the user to determine how to apply them quantitatively. Had both data providers accounted for the nature of aleatory uncertainty (Table 1), they could have supplied quantitative uncertainty estimates for each datum as well as for the spatial relationships within their data sets. This would have made a study like the present one more straightforward and resulted in more realistic aleatory uncertainty quantification for the regionalized soil moisture maps. If simple models cannot be used to quantify aleatory uncertainty at the datum and data set levels, e.g., such as parameters of a normal distribution and a global (direction-dependent) frequency spectrum quantifying spatial data interrelations, respectively, a practical alternative would be to provide a set of maps that representatively sample aleatory uncertainty in a Monte Carlo framework.

Statements

Data availability statement

The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.

Author contributions

HP: Software, Methodology, Writing – original draft, Formal Analysis, Visualization, Conceptualization. SD: Formal Analysis, Methodology, Conceptualization, Writing – review and editing. MS: Formal Analysis, Data curation, Software, Conceptualization, Writing – review and editing, Funding acquisition. PD: Writing – review and editing, Conceptualization, Project administration, Supervision.

Funding

The author(s) declare that financial support was received for the research and/or publication of this article. CRNS measurement campaigns were conducted with support from the Helmholtz Association within the framework of MOSES. MS was supported by the Deutsche Forschungsgemeinschaft (DFG grant 357874777; research unit FOR 2694, Cosmic Sense II).

Acknowledgments

We thank Uta Ködel and Andreas Schoßland for organizing and conducting the CRNS measurement campaign.

Conflict of interest

Authors HP, SD, MS, and PD were employed by UFZ – Helmholtz Centre for Environmental Research GmbH.

Generative AI statement

The author(s) declare that no Generative AI was used in the creation of this manuscript.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

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Summary

Keywords

uncertainty propagation, probabilistic prediction, Monte Carlo, regression random forest, soil moisture, aleatory uncertainty, uncertainty quantification, cosmic-ray neutron sensing

Citation

Paasche H, Dega S, Schrön M and Dietrich P (2025) Comprehensive data aleatory uncertainty propagation in regression random forest using a Monte Carlo approach: a struggle with incomplete data provision using a case study on probabilistic soil moisture regionalization. Front. Environ. Sci. 13:1599320. doi: 10.3389/fenvs.2025.1599320

Received

24 March 2025

Accepted

11 July 2025

Published

31 July 2025

Volume

13 - 2025

Edited by

Shuisen Chen, Guangzhou Institute of Geography, China

Reviewed by

Briana Wyatt, Texas A and M University, United States

Yan Songhua, Wuhan University, China

Updates

Copyright

*Correspondence: Hendrik Paasche,

Disclaimer

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

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