Frontiers in Fungal Biology | Fungal Genomics and Evolution

Original Research

Accepted on 02 Jan 2026

First genome report of Oudemansiella apalosarca and comparative transcriptomics on fruiting body formation under different light conditions

in Fungal Genomics and Evolution

Qi Gao
Sai Wei
Dong Yan
Yu Liu
Yangyang Fan
Shuang Song
Hongxin Hu
Gawesha Yasapala
K L Wasantha Kumara
Shouxian Wang

Frontiers in Fungal Biology

139 views

Original Research

Accepted on 17 Dec 2025

Divergent Volatile Metabolomes and Flavor Attributes in Rice Fermented by Aspergillus oryzae and Aspergillus flavus

in Fungal Genomics and Evolution

John G Gibbons
Colin Mccarthy
Dasol Choi
Alissa Allen Nolden
Eric A Decker
Jae-Hyuk Yu

Frontiers in Fungal Biology

224 views

Original Research

Published on 05 Dec 2025

Genome-resolved tracking of Penicillium commune in a bakery facility highlights long-term environmental persistence

in Fungal Genomics and Evolution

Annette Fagerlund
Charlotte Kummen
Anette Wold Åsli
Cathrine Kure Finne

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1712444

590 views

Original Research

Accepted on 04 Dec 2025

Fluconazole resistance among Candida species with special emphasis on ERG11 gene mutations among Candida tropicalis

in Fungal Genomics and Evolution

Vidyavathi B Chitharagi
Gowthami S
Sumana Mahadevaiah
Morubagal Raghavendra Rao
Sowmya G S
Yogeesh D Maheshwarappa

Frontiers in Fungal Biology

444 views

Original Research

Published on 24 Oct 2025

Novel and advanced MNP molecular markers accurately identify the genetic similarity of Hypsizygus marmoreus strains: a comparative evaluation with ISSR and antagonistic methods

in Fungal Genomics and Evolution

Honglei Zhao
Chuanzheng Wei
Tuo Zhang
Yihao Zhao
Xinyue Chen
Zhiwen Lv
Menghan Nie
Jian Li
Yuanzhen Liu
Baogui Xie

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1647126

981 views

Original Research

Published on 18 Sep 2025

Microbial communities from distinct Vitis species shape volatile profiles of fermenting juices while preserving varietal typicity

in Fungal Genomics and Evolution

María Laura Raymond Eder
Laura Fariña
Francisco Carrau
Alberto Luis Rosa

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1643880

1,631 views

Original Research

Published on 15 Aug 2025

The transcriptional coordination of functional gene clusters is dependent on multiple chromatin remodelers in a haploid strain of the budding yeast, Saccharomyces cerevisiae

in Fungal Genomics and Evolution

Abtsam A. Baadani
Gabrielle F. Coon
Christopher Bui
Mary C. Chidester
Reem S. Eldabagh
James T. Arnone

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1634150

1,713 views

Original Research

Published on 14 Aug 2025

Multi-loci phylogeny reveals unexpected novelty of the Thelephora palmata complex (Thelephoraceae, Thelephorales) from China

in Fungal Genomics and Evolution

Tai-Jie Yu
Rou Xue
Lin-Jie Su
Jia Li
Xing Xia
Chang Xu
Han-Chi Lei
Wen-Hao Zhang
Jing Ma
Hong-Yan Huang

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1599905

1,647 views

Original Research

Published on 30 Jul 2025

Orthrus: a Pumilio-family gene involved in fruiting body and dark stipe development in Coprinopsis cinerea

in Fungal Genomics and Evolution

Benedek Szathmári
Balázs Bálint
Botond Hegedüs
Máté Virágh
Zhihao Hou
Xiao-Bin Liu
Hongli Wu
Csenge Földi
Julien Gagneur
Johann Promeuschel

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1633301

2,214 views

Original Research

Published on 17 Jul 2025

Nanopore sequencing and hybrid assembly: unraveling the genomic landscape of dollar spot with enhanced annotation and drug resistance profiling

in Fungal Genomics and Evolution

Xiaojing Shi
Shu Zhao
John G. Gibbons
Geunhwa Jung

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1621663

1,843 views

Editorial

Published on 13 Jun 2025

Editorial: Highlights of the 16th European Conference on Fungal Genetics (Innsbruck, 5-8th March 2023)

in Fungal Genomics and Evolution

Toni Gabaldón
Gustavo H. Goldman

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1632910

1,245 views

Original Research

Published on 15 May 2025

A chromatographic approach for investigating the proliferation ability of native Saccharomyces cerevisiae yeast strains under varying temperatures and ethanol concentrations

in Fungal Genomics and Evolution

Lambros Farmakis
Panailla Aslanidou
Lia Katsou
Nikoketa Moraiti

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1542167

1,843 views

Original Research

Published on 05 Feb 2025

Dispensable genome and segmental duplications drive the genome plasticity in Fusarium solani

in Fungal Genomics and Evolution

Abbeah Navasca
Jatinder Singh
Viviana Rivera-Varas
Upinder Gill
Gary Secor
Thomas Baldwin

Frontiers in Fungal Biology

doi 10.3389/ffunb.2025.1432339

4,246 views
6 citations

Original Research

Published on 24 Jan 2025

CSE-8, a filamentous fungus-specific Shr3-like chaperone, facilitates endoplasmic reticulum exit of chitin synthase CHS-3 (class I) in Neurospora crassa

in Fungal Genomics and Evolution

Samantha Verónica González-Téllez
Meritxell Riquelme

Frontiers in Fungal Biology

doi 10.3389/ffunb.2024.1505388

3,013 views
2 citations

Correction

Published on 20 Aug 2024

Corrigendum: The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics

in Fungal Genomics and Evolution

Zheng Wang
Wonyong Kim
Yen-Wen Wang
Elizabeta Yakubovich
Caihong Dong
Frances Trail
Jeffrey P. Townsend
Oded Yarden

Frontiers in Fungal Biology

doi 10.3389/ffunb.2024.1478516

1,328 views

Review

Published on 30 Jun 2023

The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics

in Fungal Genomics and Evolution

Zheng Wang
Wonyong Kim
Yen-Wen Wang
Elizabeta Yakubovich
Caihong Dong
Frances Trail
Jeffrey P. Townsend
Oded Yarden

Frontiers in Fungal Biology

doi 10.3389/ffunb.2023.1214537

9,856 views
20 citations

Original Research

Published on 09 Jan 2023

Hesperomyces (Fungi, Ascomycota) associated with Hyperaspis ladybirds (Coleoptera, Coccinellidae): Rethinking host specificity

in Fungal Genomics and Evolution

Warre Van Caenegem
Piotr Ceryngier
Jerzy Romanowski
Donald H. Pfister
Danny Haelewaters

Frontiers in Fungal Biology

doi 10.3389/ffunb.2022.1040102

5,663 views
10 citations

Editorial

Published on 14 Dec 2022

Editorial: Biodiversity and conservation of fungi and fungus-like organisms

in Fungal Genomics and Evolution

Danny Haelewaters
Yusufjon Gafforov
Li-Wei Zhou

Frontiers in Fungal Biology

doi 10.3389/ffunb.2022.973249

3,804 views
3 citations

Editorial

Published on 07 Nov 2022

Editorial: Genomic insights on fungal hybrids

in Fungal Genomics and Evolution

Toni Gabaldón
Chris Todd Hittinger

Frontiers in Fungal Biology

doi 10.3389/ffunb.2022.1063609

2,556 views
1 citation

Review

Published on 14 Oct 2022

Ancestral sequence reconstruction as a tool to study the evolution of wood decaying fungi

in Fungal Genomics and Evolution

Iván Ayuso-Fernández
Gonzalo Molpeceres
Susana Camarero
Francisco Javier Ruiz-Dueñas
Angel T. Martínez

Frontiers in Fungal Biology

doi 10.3389/ffunb.2022.1003489

6,997 views
6 citations

Review

Published on 14 Sep 2022

Trichoderma – genomes and genomics as treasure troves for research towards biology, biotechnology and agriculture

in Fungal Genomics and Evolution

Miriam Schalamun
Monika Schmoll

Frontiers in Fungal Biology

doi 10.3389/ffunb.2022.1002161

10,393 views
33 citations

Original Research

Published on 26 Jul 2022

Genomic characterization of polyextremotolerant black yeasts isolated from food and food production environments

in Fungal Genomics and Evolution

Shiyu Cai
Abigail B. Snyder

Frontiers in Fungal Biology

doi 10.3389/ffunb.2022.928622

2,643 views
2 citations

Original Research

Published on 07 Jul 2022

Extensive Non-Coding Sequence Divergence Between the Major Human Pathogen Aspergillus fumigatus and its Relatives

in Fungal Genomics and Evolution

Alec Brown
Matthew E. Mead
Jacob L. Steenwyk
Gustavo H. Goldman
Antonis Rokas

Frontiers in Fungal Biology

doi 10.3389/ffunb.2022.802494

2,889 views
7 citations

Brief Research Report

Published on 27 Jun 2022

Increased Virulence and Large-Scale Reduction in Genome Size of Tetraploid Candida albicans Evolved in Nematode Hosts

in Fungal Genomics and Evolution

Amanda C. Smith
Hassan Rizvi
Meleah A. Hickman
Levi T. Morran

Frontiers in Fungal Biology

doi 10.3389/ffunb.2022.903135

1,867 views
2 citations

47 articles

articles

First genome report of Oudemansiella apalosarca and comparative transcriptomics on fruiting body formation under different light conditions

Divergent Volatile Metabolomes and Flavor Attributes in Rice Fermented by Aspergillus oryzae and Aspergillus flavus

Genome-resolved tracking of Penicillium commune in a bakery facility highlights long-term environmental persistence

Fluconazole resistance among Candida species with special emphasis on ERG11 gene mutations among Candida tropicalis

Novel and advanced MNP molecular markers accurately identify the genetic similarity of Hypsizygus marmoreus strains: a comparative evaluation with ISSR and antagonistic methods

Microbial communities from distinct Vitis species shape volatile profiles of fermenting juices while preserving varietal typicity

The transcriptional coordination of functional gene clusters is dependent on multiple chromatin remodelers in a haploid strain of the budding yeast, Saccharomyces cerevisiae

Multi-loci phylogeny reveals unexpected novelty of the Thelephora palmata complex (Thelephoraceae, Thelephorales) from China

Orthrus: a Pumilio-family gene involved in fruiting body and dark stipe development in Coprinopsis cinerea

Nanopore sequencing and hybrid assembly: unraveling the genomic landscape of dollar spot with enhanced annotation and drug resistance profiling

Editorial: Highlights of the 16th European Conference on Fungal Genetics (Innsbruck, 5-8th March 2023)

A chromatographic approach for investigating the proliferation ability of native Saccharomyces cerevisiae yeast strains under varying temperatures and ethanol concentrations

Dispensable genome and segmental duplications drive the genome plasticity in Fusarium solani

CSE-8, a filamentous fungus-specific Shr3-like chaperone, facilitates endoplasmic reticulum exit of chitin synthase CHS-3 (class I) in Neurospora crassa

Corrigendum: The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics

The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics

Hesperomyces (Fungi, Ascomycota) associated with Hyperaspis ladybirds (Coleoptera, Coccinellidae): Rethinking host specificity

Editorial: Biodiversity and conservation of fungi and fungus-like organisms

Editorial: Genomic insights on fungal hybrids

Ancestral sequence reconstruction as a tool to study the evolution of wood decaying fungi

Trichoderma – genomes and genomics as treasure troves for research towards biology, biotechnology and agriculture

Genomic characterization of polyextremotolerant black yeasts isolated from food and food production environments

Extensive Non-Coding Sequence Divergence Between the Major Human Pathogen Aspergillus fumigatus and its Relatives

Increased Virulence and Large-Scale Reduction in Genome Size of Tetraploid Candida albicans Evolved in Nematode Hosts