Frontiers in Microbiology

Original Research

Published on 08 Dec 2025

Integrated genomics, metagenomics and metatranscriptomics to reveal the biocontrol mechanism of Bacillus velezensis JY10 against tobacco target spot disease

in Microbe and Virus Interactions with Plants

Wenjuan Yang
Hui Liu
Rubing Xu
Yiqian Peng
Tingting Xu
Yong Yang
Yanyan Li
Haibo Xiang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1707097

2,128 views
1 citation

Perspective

Published on 08 Dec 2025

Minimal risk of Rabies lyssavirus spillover from bats in Israel: findings from long-term surveillance

in Virology

Maya Weinberg
Roni King
Roi Lapid
Boris Yakobson
Marina Eyngor
Dongsheng Luo
Efstathios S. Giotis

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1707522

1,855 views

Original Research

Published on 08 Dec 2025

Synthetic microbiota for microplastic degradation modulates rhizosphere fungal diversity and metabolic function in highland barley

in Terrestrial Microbiology

Yue Deng
Peng Xiang
Mei Zhang
Shouqin Wang
Xudong Zhou
Jincheng Liu
Qiang Li
Guiqiang He

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1711544

1,389 views

Original Research

Published on 08 Dec 2025

Artificial grassland establishment alters soil organic carbon fractions and cbbL-type carbon-sequestering microbial communities

in Terrestrial Microbiology

Linge Shan
Aasitaiken Julihaiti
Wenhao Wang
Die Lu
Yi Hu
Baolong Zhao
Yake He
Xiangkang Meng
Helong Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1726039

1,093 views

Original Research

Published on 08 Dec 2025

Seawater intrusion regulates microbial community structure and functional potential in subterranean estuaries of the Yangtze River

in Aquatic Microbiology

Yunduo Zhao
Dongsheng Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1724949

1,314 views
1 citation

Opinion

Published on 08 Dec 2025

What is the micro- and nanoplastics impact on pathogenic microorganisms?

in Infectious Agents and Disease

Iris Romero-Andrada
Alba Hernández-Bonilla
Jose Domínguez
Alicia Lacoma

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1718190

1,115 views

Original Research

Published on 08 Dec 2025

Diversity and community assembly mechanisms of soil methanotrophs in typical ecotypes of the Mitika alpine wetland in northern Xizang

in Microbiological Chemistry and Geomicrobiology

Pengxi Cao
Yuyan Wang
Zhe Wang
Liang Cao
Hairong Li
Hongmei Ma
Qiong La

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1731213

873 views

Original Research

Published on 08 Dec 2025

Spatial microbiome-metabolic crosstalk drives CD8+ T-cell exhaustion through the butyrate-HDAC axis in colorectal cancer

in Systems Microbiology

Xiaoyang Chen
Yinxu Zhang
Guangyu Zhang
Dai Wang
Linhua Dou
Yuxi Wang
Zining Huang
Xiaomei Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1704491

1,869 views

Original Research

Published on 05 Dec 2025

Experimental and field comparisons of two common methods for measuring microzooplankton grazing rates

in Aquatic Microbiology

Jennifer L. Beatty
Brittany P. Stewart
Kendra A. Turk-Kubo
Debbie Lindell
David A. Caron

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1706193

1,649 views

Original Research

Published on 05 Dec 2025

Host sweet preference modulates the salivary microbiome and its divergent associations with plaque-associated and non-plaque-related oral diseases

in Microbial Symbioses

Zhenzhen Li
Xiao Peng
Qi Wang
Liangying Guo
Shanshan Liu
Li Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1732083

1,335 views

Original Research

Published on 05 Dec 2025

Antimicrobial resistance and genomic characterization of Staphylococcus aureus in ready-to-eat foods from Mangaung Metro Municipality

in Food Microbiology

Pontso Letuka
Sebolelo J. Nkhebenyane
Tsepo Ramatla
Tywabi-Ngeva Zikhona
Kgaugelo E. Lekota
Ntelekwane G. Khasapane

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1669035

1,810 views

Editorial

Published on 05 Dec 2025

Editorial: Impacts of metal and xenobiotic-induced stress on antibiotic resistance in microbial communities

in Antimicrobials, Resistance and Chemotherapy

Rojana Sukchawalit
Agata Goryluk-Salmonowicz
Jon L. Hobman
Magdalena Popowska

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1745065

1,263 views

Original Research

Published on 05 Dec 2025

Effects of total abdominal irradiation on gut microbiota and metabolome during acute tissue injury

in Microorganisms in Vertebrate Digestive Systems

Lina Lu
Qingyu Huang
Chao Sun
Shuhe Kang
Pen Jin
Xin Wang
Xingping Luo
Jia Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1702694

1,750 views

Original Research

Published on 05 Dec 2025

The metabolite ILA of Akkermansia muciniphila improves AP-related intestinal injury by targeting and inhibiting CASP3 activity

in Microbial Physiology and Metabolism

Peiyu Li
Jiuliang Yu
Tao Li
Xiaoyong Gong
Le Li
Yi Cui
Jiayi He
Bo Li
Shuqi Wu
Qingyang Guan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1669383

1,741 views

Perspective

Published on 05 Dec 2025

Generative AI in microbial evolution and resistance: toward robust, explainable, and equitable predictions

in Systems Microbiology

Fahim Sufi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1705320

1,912 views

Mini Review

Published on 05 Dec 2025

Microbiome-targeted Alzheimer’s interventions via gut-brain axis

in Microbial Symbioses

Ruiqi Qin
Chaofan Li
Xingxing Yuan
Yinghua Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1729708

2,627 views

Original Research

Published on 05 Dec 2025

Fertilization influences the substrate, rhizosphere, and endosphere bacteriome of Petunia × hybrida

in Microbe and Virus Interactions with Plants

Juan Quijia-Pillajo
Laura J. Chapin
James S. Owen
James E. Altland
Michelle L. Jones

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1719754

1,844 views

Review

Published on 05 Dec 2025

The molecular interplay between the gut microbiome and circadian rhythms: an integrated review

in Microorganisms in Vertebrate Digestive Systems

Boyang Zheng
Liwei Wang
Shilin Sun
Xingxing Yuan
Qun Liang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1712516

2,971 views

Original Research

Published on 05 Dec 2025

Bio-organic fertilizers reshape rhizosphere bacterial community and enhance crop productivity in reclaimed soil

in Microbe and Virus Interactions with Plants

Jing Yang
Xiaomin Lu
Bing Hao
Shimei Wang
Lijuan Kong
Qingqin Shao
Weiping Li
Xingyu Wang
Youzun Xu
Wenge Wu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1713125

1,742 views

Original Research

Published on 04 Dec 2025

Multicenter epidemiology of Stenotrophomonas maltophilia bloodstream infections in Indian ICUs: building digital surveillance network

in Infectious Agents and Disease

Parul Singh
M. Nizam Ahmed
Ashish Kumar Srivastava
Arpan Kumar Thakur
Rasna Parveen
Mamta Puraswani
Subodh Kumar
Sushma Sagar
Kapil Dev Soni
Richa Aggarwal

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1725629

2,338 views

Original Research

Published on 04 Dec 2025

Neonatal gut microbiota stratification and identification of SCFA-associated microbial subgroups using unsupervised clustering and machine learning classification

in Microorganisms in Vertebrate Digestive Systems

Payam Hosseinzadeh Kasani
Cheol-Heui Yun
Kee Hyun Cho
Su Jin Jeong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1668451

1,864 views

Opinion

Published on 04 Dec 2025

From miscommunication to misinformation: Streptomyces species erroneously reported as producers of prodigiosin

in Antimicrobials, Resistance and Chemotherapy

M. Kalim Akhtar

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1693024

975 views

Correction

Published on 04 Dec 2025

Correction: Spatial pattern and environmental determinants of benthic diatom diversity in the middle and lower reaches of the Yellow River

in Aquatic Microbiology

Qingyang Guo
Qin Zhu
Pengfei Peng
Qiuling Zhou
Yong Ding
Zhenchang Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1744178

1,044 views
1 citation

Original Research

Published on 04 Dec 2025

Pre-release environmental acclimation enhances wild adaptability of endangered Kaluga sturgeon (Huso dauricus): insights from digestive, immune, and gut-microbiome perspectives

in Microorganisms in Vertebrate Digestive Systems

Cunhua Zhai
Wentao Sun
Yutao Li
Haoxiang Han
Ying Zhang
Bo Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1720688

1,260 views

39,351 articles

articles

Integrated genomics, metagenomics and metatranscriptomics to reveal the biocontrol mechanism of Bacillus velezensis JY10 against tobacco target spot disease

Minimal risk of Rabies lyssavirus spillover from bats in Israel: findings from long-term surveillance

Synthetic microbiota for microplastic degradation modulates rhizosphere fungal diversity and metabolic function in highland barley

Artificial grassland establishment alters soil organic carbon fractions and cbbL-type carbon-sequestering microbial communities

Seawater intrusion regulates microbial community structure and functional potential in subterranean estuaries of the Yangtze River

What is the micro- and nanoplastics impact on pathogenic microorganisms?

Diversity and community assembly mechanisms of soil methanotrophs in typical ecotypes of the Mitika alpine wetland in northern Xizang

Spatial microbiome-metabolic crosstalk drives CD8+ T-cell exhaustion through the butyrate-HDAC axis in colorectal cancer

Experimental and field comparisons of two common methods for measuring microzooplankton grazing rates

Host sweet preference modulates the salivary microbiome and its divergent associations with plaque-associated and non-plaque-related oral diseases

Antimicrobial resistance and genomic characterization of Staphylococcus aureus in ready-to-eat foods from Mangaung Metro Municipality

Editorial: Impacts of metal and xenobiotic-induced stress on antibiotic resistance in microbial communities

Effects of total abdominal irradiation on gut microbiota and metabolome during acute tissue injury

The metabolite ILA of Akkermansia muciniphila improves AP-related intestinal injury by targeting and inhibiting CASP3 activity

Generative AI in microbial evolution and resistance: toward robust, explainable, and equitable predictions

Microbiome-targeted Alzheimer’s interventions via gut-brain axis

Fertilization influences the substrate, rhizosphere, and endosphere bacteriome of Petunia × hybrida

The molecular interplay between the gut microbiome and circadian rhythms: an integrated review

Bio-organic fertilizers reshape rhizosphere bacterial community and enhance crop productivity in reclaimed soil

Multicenter epidemiology of Stenotrophomonas maltophilia bloodstream infections in Indian ICUs: building digital surveillance network

Neonatal gut microbiota stratification and identification of SCFA-associated microbial subgroups using unsupervised clustering and machine learning classification

From miscommunication to misinformation: Streptomyces species erroneously reported as producers of prodigiosin

Correction: Spatial pattern and environmental determinants of benthic diatom diversity in the middle and lower reaches of the Yellow River

Pre-release environmental acclimation enhances wild adaptability of endangered Kaluga sturgeon (Huso dauricus): insights from digestive, immune, and gut-microbiome perspectives