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Microbes and Cultural Heritage: From Biodiversity to Applications

Cover image for Research Topic "Microbes and Cultural Heritage: From Biodiversity to Applications"
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Editorial01 April 2026
Editorial: Microbes and cultural heritage: from biodiversity to applications

combining high-throughput sequencing, metabolomics, microscopy, environmental monitoring, and applied conservation science. Together, they demonstrate that understanding microbial biodiversity is essential not only to diagnose biodeterioration but also to design sustainable and informed preservation strategies.

A central theme emerging from this collection is that each heritage material hosts a distinct, substrate-driven microbiome. Material composition, physicochemical properties, microclimate, and human contact shape microbial community assembly. Zhou et al.

Several studies in this collection emphasize translational applications and sustainable microbial management. Krasnicki et al. evaluated the efficacy of 90% ethanol applied as a mist to disinfect historical leather artifacts from the Auschwitz-Birkenau State Museum. The treatment achieved substantial microbial reduction without compromising collagen structure, demonstrating that effective disinfection can coexist with material preservation. Dumbravă et al. explored multifunctional protective strategies for wooden heritage using silver nanoparticles embedded in polyacrylic resins and siloxane-based coatings. These treatments exhibited antimicrobial, anti-biofilm, and anti-metabolic activity while showing minimal phytotoxic impact. Their work illustrates how nanotechnology and microbiology converge to produce durable, environmentally responsible conservation materials.Collectively, these applied studies signal a shift from indiscriminate sterilization toward targeted, substrate-compatible, and ecologically informed preservation strategies.

The contributions gathered in this Research Topic demonstrate that heritage microbiology has evolved into an integrative discipline linking biodiversity, function, and application.

1,441 views

CORRECTION
9 February 2026
Correction: Extensive biofilm covering on sgraffito wall art: a call for proactive monitoring
Irit Nir, 5 more and Ariel Kushmaro

825 views

ORIGINAL RESEARCH
21 January 2026
Extensive biofilm covering on sgraffito wall art: a call for proactive monitoring
Irit Nir, 5 more and Ariel Kushmaro

1,872 views

ORIGINAL RESEARCH
24 September 2025
Difference and environmental drivers of bacterial communities on wall paintings of the Maijishan and Mogao Grottoes, China
Wenxia Ma, 7 more and Huyuan Feng

5,065 views

1 citations

Echoes of 1816: microbial footprints in heritage artifacts from Argentina’s museum of independence
ORIGINAL RESEARCH
10 July 2025
Echoes of 1816: microbial footprints in heritage artifacts from Argentina’s museum of independence
Daniel Gonzalo Alonso-Reyes, 7 more and Virginia Helena Albarracín
IntroductionHistorical artifacts preserved in museums are invaluable cultural treasures but are often susceptible to biodeterioration driven by microbial colonization. Despite increasing awareness of microbial impacts on heritage conservation, systematic microbiological studies of such objects remain limited, particularly in Latin America.MethodsThis study presents the first comprehensive investigation of bacteria inhabiting heritage artifacts from Casa Histórica de la Independencia, Argentina’s Museum of Independence. Samples were collected from a range of materials, including wood, textiles, architectural elements, and exterior walls. Microbial colonization was assessed using scanning electron microscopy (SEM), and bacterial isolates were phenotypically and taxonomically characterized via VITEK MALDI-TOF mass spectrometry. Selected isolates were further subjected to genomic analysis.ResultsSEM imaging revealed diverse and well-structured biofilms with intricate three-dimensional architectures embedded in extracellular polymeric substances. A total of 49 bacterial strains were isolated, predominantly Gram-positive genera such as Bacillus, Micrococcus, and Kocuria. The 19th-century albumen print photograph emerged as the most biodiverse artifact, yielding 21 distinct strains, including extremophilic genera such as Streptomyces, Oceanobacillus, and Caldibacillus thermoamylovorans. The albumen layer’s protein-rich and halophilic properties likely promoted microbial colonization. Notably, Pseudomonas species were found exclusively on this photographic material. Human-associated taxa, such as Staphylococcus epidermidis and Staphylococcus equorum, were primarily detected in high-contact zones, while exterior surfaces exhibited unique microbial profiles, including opportunistic pathogens.DiscussionThe findings highlight a complex and substrate-specific microbial landscape across the museum’s collection. The presence of halophiles and human-associated bacteria points to both intrinsic material properties and external contamination sources. This study shows the importance of incorporating microbiological data into conservation protocols. By characterizing the artifact-associated microbiota, we contribute to the emerging field of heritage microbiology and future bio-informed preservation strategies.

6,598 views

2 citations

ORIGINAL RESEARCH
22 August 2025
Multifunctional protective strategies for wooden cultural heritage: antimicrobial efficacy of polyacrylic resins, siloxane coupling agents, and silver nanoparticles
Andreea Ștefania Dumbravă, 12 more and Mariana Carmen Chifiriuc

3,763 views

3 citations

Identifying keystone taxa and metabolisms of epilithic biofilms is crucial to the conservation of stone heritage from biodeterioration
ORIGINAL RESEARCH
27 May 2025
Identifying keystone taxa and metabolisms of epilithic biofilms is crucial to the conservation of stone heritage from biodeterioration
Chenchen Ma, 2 more and Xiaobo Liu
BackgroundOutdoor stone heritage accounts for a large portion of UNESCO World Heritage Sites and is an essential carrier of the ancient civilization of our society. Unfortunately, they usually suffer from serious biodeterioration by diverse microbial colonizers, especially when the environment is available. As microbial communities evolve with the environment, it is important to link the bio-deteriogens to biodeterioration processes accurately.MethodsWe used an integrative high-throughput sequencing and comparative metabolomic approach to unravel the biodeterioration of the Leizhou Stone Dog monuments.ResultsThe divergence and similarity of the composition of microbial biofilms colonizing the monuments indicated that photoautotrophic bacteria (e.g., Leptolyngbya, Chroococcidiopsis, and Chloroplast) and nitrifying archaea (e.g., the family Nitrososphaeraceae) and/or bacteria (e.g., Massilia and Bacillus) are the keystone taxa governing the biodeterioration processes. Further, the correlation between the keystone taxa and physicochemical properties confirmed the consistency of the observations of the keystone metabolisms involved in the biodeterioration processes.ConclusionOur study highlights the necessity of a case-by-case diagnosis of the keystone taxa and metabolisms before any therapy, advancing the conservation science of cultural heritage.

3,139 views

5 citations

ORIGINAL RESEARCH
3 June 2025
Analysis and prevention of microbial degradation of shadow puppetry artifacts preserved in the National Shadow Puppetry Museum in Chengdu
Yu Wang, 7 more and Jiao Pan

5,387 views

3 citations

ORIGINAL RESEARCH
22 May 2025
Increased heavy rainfall followed by periods of drought due to climate change is leading to more frequent salt-crystallization cycles. This not only leads to increased salt-weathering on architectural surfaces of cultural heritage monuments, but also creates an ideal ecological niche for the formation of biofilms by salt-loving microorganisms. These biofilms, characterized by a distinctive pink coloration, cause additional esthetic alterations to affected surfaces. In this study, mineral poultices prepared with different clay minerals (sepiolite, kaolinite and vermiculite) were developed and tested for a long-term (1 year) application on salt-weathered surfaces, thus contributing to their preservation. The poultices were tested on the surfaces of two historic buildings: the St. Virgil’s Chapel in Vienna and the Mauerbach Charterhouse in Lower Austria, both showing salt efflorescence and a uniform pink biofilm. First, the poultices were tested to evaluate their salt retention capacity, salt-weathering resistance and processability. The retention properties of the poultices were examined by measuring their salt content throughout the treatment using high performance liquid chromatography (HPLC) and continuous flow analysis (CFA). Salt content was also measured on the wall surfaces before and after treatment. Second, the effect of the desalination treatments on salt-associated pink biofilms was also evaluated. The shifts within the biofilm communities during and after the treatment were monitored by qPCR and long-read archaeal- and bacterial-16S rRNA amplicon analysis using the Nanopore sequencing technology. The results demonstrate that both the selected clay minerals and the salt composition in the treated areas significantly influenced the salt storage capacity of the poultices and their resistance to salt weathering. Fluctuations in salt load and ionic composition during and after treatment affected biofilm composition, with bacterial communities proving more sensitive than archaea to these changes. Both qPCR and metataxonomic results show that the effects of the poultices on the colonizing biofilms depend not only on the composition of their microbial members, but also on external abiotic factors such as the chemical composition and concentration of the salt mixtures on the surfaces. In addition, the biodiversity within the biofilms shows to be affected differently depending on the mineral clay used.
Microbial community shifts during salt mitigation treatments of historic buildings using mineral poultices: a long-term monitoring of salt and associated biofilms

5,138 views

3 citations

Reducing microbial contamination on historical leather artifacts at the Auschwitz-Birkenau State Museum using ethanol in the form of mist
PurposeThe aim of the study was to evaluate the biocidal efficacy and determine the influence of 90% ethyl alcohol applied in the form of a mist on the surface of model and historical leather.Materials and methodsThe main object of the study were historical leather shoes from the collections of the Auschwitz-Birkenau State Museum (A-BSM) in Oświęcim (Poland). Microorganisms found before on historical leather objects in A-BSM were inoculated onto samples of model and historical leather. Ethanol mist was applied with an airbrush with optimized parameters for 15 s at a concentration of 90%. To increase the biocidal effectiveness, the samples were sealed in a tight package and stored for 22 hours. The effect of disinfection was assessed using culture-dependent methods. Changes on the surfaces was assessed using SEM, FTIR, and XPS techniques.ResultsOn surfaces inoculated with microorganisms in the following quantities: 105 − 108 CFU bacteria and 105 CFU fungi, a reduction of 99.51% to 99.99% was observed. Ethanol disinfection had no negative effect on the surface morphology and collagen structure.ConclusionsDisinfection with ethanol applied in the form of mist can be effectively used to eliminate microbiological contamination of historical objects made of leather in A-BSM.

3,581 views

6 citations

ORIGINAL RESEARCH
10 December 2024
Insight into the microbial diversity and community in the sacrificial pits of Sanxingdui site (Sichuan, China)
Ruru Chen, 3 more and Rui Wen

2,939 views

2 citations

Microbial diversity in earthen site of exhibition Hall of pit no. 1 at the terracotta warriors Museum in Emperor Qinshihuang’s mausoleum site museum and its correlation with environmental factors
ORIGINAL RESEARCH
20 September 2024
Microbial diversity in earthen site of exhibition Hall of pit no. 1 at the terracotta warriors Museum in Emperor Qinshihuang’s mausoleum site museum and its correlation with environmental factors
Cen Wang, 10 more and Jiao Pan
Earthen sites are essential cultural relic resources, and site museums are a fundamental component of China's cultural heritage protection. The mausoleum of the Qin Shi Huang Emperor is one of the largest, most peculiar, and richest imperial tombs in the world. The exhibition hall of the burial pit No. 1 of the Terra Cotta Warriors is the earliest exhibition hall built and opened to the public. However, after years of excavation and open exhibitions, the earthen site of the Emperor Qinshihuang's Mausoleum Site Museum has deteriorated to varying degrees due to changes in the modern environment. There is an urgent need to control microbial diseases and protect the earthen site. We analyzed the physical and chemical properties and bioindicators of the collected soil samples.We also established a metagenomic library and conducted a correlation analysis between microbial community composition and environmental factors. Cultivable fungi obtained from air and soil samples were identified, and allicin volatile gas fungistasis test was conducted. Research has found that four different areas of the exhibition hall have different types of microbial diseases owing to their different environments. The main pathogenic fungi in earthen site may lead to potential microbial diseases that affect important cultural relics such as the Terra Cotta Warriors. Penicillium, Aspergillus and Talaromyces showed relatively specific growth in relation to environmental factors and showed a better raw growth advantage.Allicin gas had a inhibitory effect on 12 types of fungi, therefore allicin gas had a potent inhibitory effect on the growth of the most culturable fungal hyphae.

6,809 views

9 citations