ORIGINAL RESEARCH article

Front. Pharmacol., 16 September 2021

Sec. Respiratory Pharmacology

Volume 12 - 2021 | https://doi.org/10.3389/fphar.2021.744826

Anlotinib Inhibits PFKFB3-Driven Glycolysis in Myofibroblasts to Reverse Pulmonary Fibrosis

  • 1. Chronic Airways Diseases Laboratory, Department of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, China

  • 2. Guangdong Provincial Key Laboratory of Tropical Disease Research, Department of Occupational Health and Medicine, School of Public Health, Southern Medical University, Guangzhou, China

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Abstract

Idiopathic pulmonary fibrosis (IPF) is a fatal disease in which the normal alveolar network is gradually replaced by fibrotic scars. Current evidence suggests that metabolic alterations correlate with myofibroblast activation in IPF. Anlotinib has been proposed to have antifibrotic effects, but the efficacy and mechanisms of anlotinib against lung fibrosis have not been systematically evaluated. The antifibrotic effects of anlotinib were evaluated in bleomycin-induced mouse models and transforming growth factor-beta 1 (TGF-β1)-stimulated lung fibroblasts. We measured lactate levels, 2-NBDG glucose uptake and the extracellular acidification rate (ECAR) to assess glycolysis in fibroblasts. RNA-protein coimmunoprecipitation (RIP) and polysome analyses were performed to investigate novel mechanisms of glycolytic reprogramming in pulmonary fibrosis. We found that anlotinib diminished myofibroblast activation and inhibited the augmentation of glycolysis. Moreover, we show that PCBP3 posttranscriptionally increases PFKFB3 expression by promoting its translation during myofibroblast activation, thus promoting glycolysis in myofibroblasts. Regarding mechanism, anlotinib exerts potent antifibrotic effects by downregulating PCBP3, reducing PFKFB3 translation and inhibiting glycolysis in myofibroblasts. Furthermore, we observed that anlotinib had preventative and therapeutic antifibrotic effects on bleomycin-induced pulmonary fibrosis. Therefore, we identify PCBP3 as a protein involved in the regulation of glycolysis reprogramming and lung fibrogenesis and propose it as a therapeutic target for pulmonary fibrosis. Our data suggest that anlotinib has antifibrotic effects on the lungs, and we provide a novel mechanism for this effect. Anlotinib may constitute a novel and potent candidate for the treatment of pulmonary fibrosis.

Introduction

Fibrosis can develop in most organs and cause organ failure. The most common type of lung fibrosis is idiopathic pulmonary fibrosis (IPF), which is highly prevalent and associated with a dramatically increased disease burden worldwide (Wynn and Ramalingam, 2012; Hutchinson et al., 2015). Overall, the development of new therapeutics should be pursued. Currently, only pirfenidone and nintedanib have been approved as therapeutics for IPF (Taniguchi et al., 2010; Sato et al., 2017), and as both drugs have limited efficacy (Spagnolo and Maher, 2017), there is an urgent need to identify new potential therapeutic agents for IPF patients.

Upon chronic microinjury to the alveolar epithelium, fibroblast activation and transdifferentiation into myofibroblasts are among the first responses detectable at the site of damage (Plantier et al., 2018). Myofibroblasts are characterized by de novo expression of α-smooth muscle actin (α-SMA), the formation of stress fibers, and enhanced abilities to proliferate, migrate, and produce extracellular matrix (ECM) (Hinz, 2012; Hinz et al., 2012; Liu et al., 2021). These cells drive a wound-healing response that relies on the deposition of collagen-rich ECM and activates transforming growth factor-beta 1 (TGF-β1) signaling (Kenyon et al., 2003; Sapudom et al., 2015; Nigdelioglu et al., 2016). This transient response must be tightly controlled, otherwise it can become persistent and lead to excessive matrix accumulation and fibrosis. Understanding the molecular bases of fibroblast activation is therefore essential in identifying novel and efficient antifibrotic therapeutic targets to reduce the incidence, morbidity and mortality of people suffering from clinically refractory disorders, including IPF.

Metabolic perturbation is implicated in the pathogenesis of several kinds of tissue fibrosis (DeBerardinis and Thompson, 2012; Chen et al., 2018), including pulmonary fibrosis (Para et al., 2019; Bueno et al., 2020). To cope with the high energy demands of myofibroblasts, including increases in proliferation and matrix production, it is reasonable that activated myofibroblasts exhibit augmented aerobic glycolysis to meet additional bioenergetic and biosynthetic demands, even in oxygen-rich conditions, similar to observations in many cancer cells and other nonmalignant proliferating cells. A major driver of glycolysis is 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase-3 (PFKFB3), which produces fructose-2,6-bisphosphate (F2,6BP), the most potent allosteric activator of the glycolytic rate-limiting enzyme phosphofructokinase-1 (PFK1) (Van Schaftingen et al., 1982; Cao et al., 2019). Previous studies have shown that augmentation of aerobic glycolysis is an essential step during myofibroblast activation (Para et al., 2019). Ramping down glycolysis is effective in diminishing myofibroblast activation, thus limiting lung fibrosis. However, metabolism-based therapeutics for treating fibrotic disorders are still lacking.

Anlotinib (AL3818) hydrochloride is a novel multitargeted tyrosine kinase inhibitor (TKI) that targets the receptor tyrosine kinases vascular endothelial growth factor receptor (VEGFR) 1 thru 3, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor (FGFR) 1 thru 4, platelet-derived growth factor receptor (PDGFR) α and β, and stem cell factor receptor (Sun et al., 2016; Xie et al., 2018). Many studies have reported the therapeutic effects of anlotinib in several diseases, such as nonsmall cell lung cancer (Liang et al., 2019), endometrial cancers (Taurin et al., 2018) and osteosarcoma (Liang et al., 2019). Interestingly, the targets of anlotinib are similar to those of nintedanib, a drug that has been approved for the treatment of IPF. A recent report suggested that intraperitoneal administration of anlotinib attenuates bleomycin-induced lung fibrosis in mice by suppressing the TGF-β signaling pathway (Ruan et al., 2020). Nevertheless, the mechanism by which anlotinib resolves lung fibrosis and whether anlotinib may be therapeutically used to improve lung function are not well understood.

In the current study, we analyzed the antifibrotic effect of anlotinib on TGF-β1-induced fibroblast transdifferentiation and bleomycin-induced pulmonary fibrosis. Our data suggest that anlotinib therapy decreases fibrotic markers in vitro and in vivo. The antifibrotic effect of anlotinib is associated with inhibition of PFKFB3-dependent glycolysis, which is posttranscriptionally regulated by the RNA binding protein PCBP3. These findings provide a theoretical basis for the clinical development and application of anlotinib for the treatment of pulmonary fibrosis.

Materials and Methods

Isolation of Primary Mouse Fibroblast Cultures

Normal mouse primary fibroblasts were generated by culturing the lungs of C57BL/6 as previously described (Meng et al., 2014). The cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM, Gibco, United States) supplemented with 15% fetal bovine serum (FBS, PAN, German). The cells were cultured at 37°C in 5% CO2 and 95% humidity. Unless specifically noted, all experiments were performed with cells at passage 3.

Cell Lines

Human lung fibroblast line IMR90 was purchased from American Type Culture Collection (Manassas, VA). IMR90 were maintained in DMEM supplemented with 10% FBS, 100 units/mL penicillin, and 100 g/ml streptomycin in 5% CO2 and 95% humidity at 37°C.

Western Blotting

Cells or dissected mouse lung tissue samples were lysed in ice-cold RIPA lysis buffer with protease inhibitors. Protein concentrations were determined using a BCA Protein Quantitative Analysis Kit (Fudebio-tech) after which protein samples were separated by 8–12% SDS-PAGE and transferred onto polyvinylidene difluoride membranes (Millipore). The membranes were then incubated at room temperature for 1 h in TBST containing 5% BSA. After blocking, the membranes were incubated with primary antibodies for 24 h at 4°C.The following primary antibodies were used: anti-Fibronectin (Abcam, ab268020); anti-Collagen I (affinity, AF7001); anti-alpha smooth muscle (Abcam, ab5694); anti-PFKFB3 (Abcam, ab181861); anti-Beta actin (proteintech, 66009-1-Ig); anti-Hexokinase 2 (proteintech, 22029-1-AP); anti-PKM2 (Proteintech, 15822-1-AP); anti-LDHA (Proteintech, 19987-1-AP); anti-LDHB (Proteintech, 14824-1-AP); and anti-PCBP3 (Abcam, ab154252). Then, the membranes were washed three times with TBST and incubated with donkey anti-rabbit IgG H&L (Abcam, ab175772) for 1 h at room temperature. The membranes were developed using the ECL method according to the manufacturer’s instructions (Millipore) and detected on a GeneGnome XRQ chemiluminescence imaging system (Syngene). ImageJ was used to calculate the relative density of proteins.

Immunofluorescence Staining

The culture medium was washed away with PBS. The cultured cells were fixed with 4% paraformaldehyde for 30 min. Then, the samples were permeabilized with 0.5% Triton X-100 in PBS for 10 min, blocked with 1% BSA in PBS for 1 h at room temperature, and incubated with primary antibodies at 4°C overnight. The primary antibodies included anti- Fibronectin (Abcam, ab268020), anti-alpha smooth muscle (Abcam, ab5694) and anti-PCBP3 (Abcam, ab154252). Then, the cells were washed three times with PBS and incubated with goat anti-rabbit IgG/Alexa Fluor 555-conjugated secondary antibodies (Biosynthesis, bs-0296GA488 and bs-0295G-AF555) for 1 h at room temperature followed by 10 min of DAPI (4’,6-diamidino-2-phenylindole dihydrochloride) staining to visualize cell nuclei visualization as previously described (Chen et al., 2021).

Quantitative RT-PCR (qPCR)

Total RNA was isolated from primary mouse lung fibroblasts using RNA MiniPrep Kits (Zymo Research, R2050). Reverse transcription reactions were performed with a PrimeScriptTM II 1st strand cDNA synthesis Kit (Takara, 6210A/B) according to the manufacturer’s recommendations. qPCR analysis was performed using a HiScript RT- SuperMix for qPCR kit (Vazyme, R223-01) with a CFX96 Touch Real-Time PCR Detection System. The mRNA levels of target genes were normalized to the β-actin mRNA level. Primers used for qPCR are listed in (Table 1).

TABLE 1

GeneSpeciesForward primerReverse primer
β-actinMus musculusGGC​TGT​ATT​CCC​CTC​CAT​CGCCA​GTT​GGT​AAC​AAT​GCC​ATG​T
PFKFB3Mus musculusCCC​AGA​GCC​GGG​TAC​AGA​AGGG​GAG​TTG​GTC​AGC​TTC​G

List of primer sequences used in this study.

Wound-Healing Migration Assay

Cells were seeded in six-well plates and grown until they reach 100% confluence. A “wound” was subsequently created with a sterile 100 μL pipette tip. The cells were pretreated with anlotinib (1 µM) for 3 h and then exposed to TGF-β1 (10 ng/ml) for an additional 24 h. After 24 h, the cells were fixed with 4% paraformaldehyde, and images were obtained using a fluorescence microscope. Wound area can be calculated by manually tracing the cell-free area in captured images using the ImageJ public domain software (NIH, Bethesda, MD).

Cell Proliferation Assay

Cell proliferation was determined by the CCK-8 Kit (Dojindo Laboratories) according to the manufacturer’s instructions. Briefly, 10 μL of CCK-8 solution was added to cultured cells in each well, followed by incubation at 37°C for 1 h. The OD values were measured at 450 nm using a microplate reader. EdU staining was conducted using the BeyoClick™ EdU Cell Proliferation Kit with Alexa Fluor 594 (Beyotime, Cat. No: C00788L). Cells were washed with PBS. Fresh DMEM was added, and then, 10 µM EdU was added into the medium. The cells were incubated for 2 h at 37°C/5% CO2. After the incubation, the cells were washed with PBS to remove the DMEM and the free EdU probe. The cells were then fixed in 4% paraformaldehyde at room temperature for 30 min before being stained with DAPI for 3 min. After an additional wash in PBS, the cells were observed under Nikon ECLIPSE TS100 (Japan).

Glucose Uptake Assay

Primary mouse lung fibroblasts were pretreated with anlotinib (1 µM) for 3 h and then exposed to TGF-β1 (10 ng/ml) for an additional 24 h. Then, the four types of cells were detached and transferred to a 96-well plate in fresh growth medium at a density of 10,000 cells per well for the direct 2-NBDG glucose uptake assay. The cells were rinsed twice with PBS. Glucose uptake was initiated by the addition of 100 μM 2-NBDG to each well. After 30 min, the medium was removed. The plates were then rinsed with PBS, and the fluorescence was measured at an excitation wavelength of 485 nm and an emission wavelength of 535 nm.

Intracellular and Extracellular Lactate Analysis

To measure lactate production, cells were treated as described for the glucose uptake assay. One hundred thousand cells were then plated into a 12-well plate and incubated in DMEM containing 10% FBS for 10 h. To measure the secretion of lactate, the media were removed, and the cells were incubated in FBS-free DMEM. After incubation for 1 h, the supernatant was collected to measure lactate production (Biovision). The reaction mixture was incubated for 30 min at room temperature in the dark. The lactate levels were measured at 450 nm in a microplate reader and normalized to the protein concentrations. To measure the lactate levels in mouse lung tissue, 10 mg of lung tissues was isolated and homogenized in assay buffer (Biovision). The samples were centrifuged, and the soluble fractions were measured and normalized to the protein concentrations.

Extracellular Acidification Rate

The extracellular acidification rate (ECAR) was measured using the Agilent Seahorse XFp Extracellular Flux Analyzer (Seahorse Bioscience). Experiments were performed according to the manufacturer’s instructions. ECAR were measured using Seahorse XF Glycolysis Stress Test Kit (Agilent Technologies). Briefly, cells were transfected or infected as in glucose uptake assay. The transfected cells were harvested and the cell number was counted. After baseline measurements, glucose, the oxidative phosphorylation inhibitor oligomycin, and the glycolytic inhibitor 2-DG were sequentially injected into each well at the indicated time points. Data were analysed by Seahorse XFp Wave software. ECAR is reported in mpH/minute. The cells in each well were digested by trypsin digestion (Gibco, United States), and count cell numbers by cell counting chamber. The results were normalized to normalized to cell number in each well.

RNA Immunoprecipitation (RIP)

Cells were rinsed twice with ice-cold PBS and lysed with an equal pellet volume of RIPA-2 buffer. Protein-A Dynabeads (Invitrogen) were incubated with either mouse IgG or FLAG antibody (Abcam, ab205606). Beads coated in antibody were resuspended in NT2 buffer. Thawed and clarified lysates were added and the bead/antibody/lysate mixture was incubated at 4°C overnight rotating end-over-end. Beads were washed with cold NT2 buffer five times. Proteinase K treatment released RNAs from bound proteins and input and bound RNA was isolated with TRIzol (Invitrogen) and reverse transcribed as described above.

Polysome Analysis

Cells were transfected with empty vector or Flag-PCBP3 and incubated with 100 g/ml cycloheximide for 10 min and lysed with polysome extraction buffer containing 20 mM Tris–HCl, pH 7.5, 100 mM KCl, 5 mM MgCl2 and 0.5% NP-40 as previously described (Kim et al., 2015). Cytoplasmic lysates were fractionated by ultracentrifugation through 10–50% linear sucrose gradients and divided into 12 fractions. The total RNA in each fraction was extracted and analyzed by quantitative RT-PCR analysis.

Overexpression Experiments and RNA Interference

The Plasmid vector encoding PCBP3 and the empty vector were purchased from Hanbio (Shanghai, China). Primary mouse lung fibroblasts were cultured in six well plates (105 cells/well) and added with 2.5 μg of target plasmid per well. After 12 h, the transfection medium was changed to normal medium. Effects of overexpression on mRNA and protein levels were examined 36 h later. The siRNA targeting mouse PFKFB3 (PFKFB3 siRNA: 5′- CCU​CUU​GAC​CCU​GAU​AAA​UTT-3′) were synthesized by Genepharma Co. (Shanghai, China). Primary mouse lung fibroblasts were cultured in six well plates (105 cells/well) and transfected using Lipofectamine 3,000 (Invitrogen, CA) with PFKFB3 siRNA or negative control siRNA (NC siRNA) for 48 h following the manufacturer’s instructions.

Animal Experiments

All experiments were conducted in accordance with protocols approved by the Southern Medical University Institutional Animal Care and Use Committee. Female mice (C57BL/6), 6–8 weeks of age, were purchased from Southern Medical University. The mice were kept on a 12 h light-dark cycle with free access to food and water. For bleomycin administration, the mice were anesthetized with 2, 2, 2-tribromoethanol (Sigma-Aldrich), followed by intratracheal instillation of BLM (5 U/kg, i. t.) in 50 μL phosphate-buffered saline (PBS) or equally volume PBS for 21 days. The mice were administered dimethyl sulfoxide (DMSO) (control group) or anlotinib (1 mg/kg, i. p.) once daily for 21 consecutive days. Further experiments were designed to measure the effects of delayed anlotinib administration. Anlotinib treatment was initiated 1 week after exposure to bleomycin, and the mice were administered with anlotinib (1 or 2 mg/kg/day) for 2 weeks, and the mice were sacrificed at day 21. The lungs were harvested for further analyses.

Pulmonary Function Test

At endpoint, at least 5 mice from each group were anesthetized with 2,2,2-tribromoethanol in saline, tracheotomized below the larynx, and intubated with a tracheal cannula. After the surgery, the mice were placed inside the plethysmographic chamber and the cannula was connected to the machine. Pulmonary function was measured by pulmonary function test system (BUXCO, United States). The system’s software automatically records and displays the pulmonary function parameters.

Hydroxyproline Assay

Lung collagen content was measured with a hydroxyproline (HYP) kit (Nanjing Jian Cheng Institute, Nanjing, China). The lung tissues were prepared for hydrolysis, adjusting the PH value to 6.0–6.8. Subsequently, the developing solution was added to the tissues that were incubated at 37°C for 5 min. Absorbance was read at 550 nm using a microplate reader. Data were expressed as micrograms (µg) of HYP per mg of wet lung tissue.

Materials

TGF-β1 were purchased from R&D Systems, Inc. (Minneapolis, MN, United States). Anlotinib dihydrochloride (AL3818, S8726) were purchased from Selleck (Houston, TX, United States).

Statistical Analysis

The results are expressed as the means ± standard deviation (SD). Multigroup comparisons were performed using one-way ANOVA. Student’s t-test was used for comparisons between two groups. A p value of less than 0.05 was considered significant. Replicates consisted of at least three independent experiments. Analyses were performed on SPSS version 25.0 (IBM) for Windows and GraphPad Prism version 6.0 (GraphPad Software, CA).

Results

Anlotinib Represses Myofibroblast Activation and the Profibrogenic Phenotype in vitro

Given that TGF-β1 is the predominant cytokine that stimulates the differentiation of lung fibroblasts into myofibroblasts and induces ECM production (Sapudom et al., 2015; Huang et al., 2020), we examined the effect of anlotinib (the chemical structure is shown in Supplementary Figure S1) on TGF-β1-induced activation of primary mouse lung fibroblasts (MLFs). The CCK-8 assay results showed that anlotinib did not cause significant cytotoxicity at doses of 1 µM (Figure 1A). To mimic the inhibitory effect of anlotinib on the progression of lung fibrosis, primary MLFs were pretreated with anlotinib (1 µM) for 3 h and then exposed to TGF-β1 (10 ng/ml) for an additional 24 h. Our results demonstrated that TGF-β1 induced the expression of fibronectin, collagen I, and α-SMA, but anlotinib reversed the expression of these fibrotic markers (Figures 1B,C). Immunofluorescence analysis of α-SMA and fibronectin showed similar results (Figures 1D,E). We also examined whether anlotinib affected the proliferation and migration of fibroblasts, which have been shown to significantly contribute to many fibrotic pathologies (Jarman et al., 2014; Huang et al., 2020). As shown by the EdU (Figures 1F,G) and CCK-8 results (Figure 1H), anlotinib treatment prevented the TGF-β1-induced proliferation of primary MLFs. Moreover, anlotinib inhibited the TGF-β1-induced migration of fibroblasts (Figures 1I,J). These results were confirmed in the human IMR90 cell line (Figures 1K, L and Supplementary Figures S2A–D). These data indicate that anlotinib can repress myofibroblast activation and the profibrogenic phenotype in vitro.

FIGURE 1

FIGURE 1

Anlotinib represses myofibroblast activation and the profibrogenic phenotype in vitro.(A) Dose-dependent cytotoxicity of anlotinib in primary mouse lung fibroblast isolated from healthy mice by CCK-8. (B) Western blots analysis of Fibronectin, Collagen I, α-SMA and β-actin in mouse lung fibroblasts treated with anlotinib (1 µM) for 3 h and then exposed to TGF-β1 (10 ng/ml) for 3  h, followed by TGF-β1 for an additional 24 h. (C) Quantification for the indicated protein (mean ± SD, n = 3). Immunofluorescence for α-SMA (green) (D) and Fibronectin (green) (E). DAPI-stained nuclei (blue). Scale bar, 25 µm. (F) An EdU assay was used to observe the proliferative cells. Scale bar, 100 µm. (G) The number of EdU-positive cells was recorded (mean ± SD, n = 3). (H) A cck8 assay was used to observe the proliferative cells. (I) Representative images to show scratch-wound assay. Scale bars, 100 µm. Experiments were performed as in B. Images were taken 0, and 24 h after assay (white lines indicate wound edge). (J) Quantitative analysis of migration distance (mean ± SD, n = 3). (K) Western blots analysis of Fibronectin, Collagen I, α-SMA and β-actin in IMR90 cells treated with anlotinib (1 µM) for 3 h and then exposed to TGF-β1 (10 ng/ml) for an additional 24 h. (L) Quantification for the indicated proteins in IMR90 cells (mean ± SD, n = 3). *p < 0.05, **p < 0.01, ***p < 0.001 VS TGF-β1-treated group (ANOVA).

Anlotinib Inhibits PFKFB3-Driven Glycolysis in Lung Myofibroblasts

To investigate the potential antifibrotic mechanisms of anlotinib, we estimated the most likely macromolecular targets of anlotinib and obtained 100 potential targets through SwissTargetPrediction (Table 2) (Gfeller et al., 2014). A total of 7,360 lung fibrosis-related targets were obtained from the GeneCards database (Table 3) (Safran et al., 2002). To clarify the interaction between potential anlotinib targets and lung fibrosis-related targets, the intersection of the targets was mapped by drawing a Venn diagram and constructing a target network (Figure 2A). Seventy-four common targets were shared between the potential anlotinib targets and lung fibrosis-related targets (Table 4). STRING (version 11.0) was used for protein-protein interaction (PPI) analysis (Figure 2B) (Szklarczyk et al., 2019). Bioinformatics analysis data identified mitogen-activated protein kinase (MAPK) signaling pathway-related genes as the top hits among the 74 genes (Figure 2C). Given that the MAPK pathway is well recognized as a metabolic regulator and that many of these genes control metabolic processes (Figure 2D) (Ho et al., 2004; Papa et al., 2019; Hu et al., 2020; Wang F. et al., 2020), we first confirmed the presence of glycolytic alterations in lung myofibroblasts. We directly measured the levels of lactate and found that both intracellular and extracellular lactate levels in lung myofibroblasts treated with TGF-β1 were significantly increased (Figures 2E,F). Consistent with the augmented glycolysis in lung myofibroblasts, these cells also demonstrated increased glucose consumption (Figure 2G). However, anlotinib treatment decreased the production and secretion of lactate and reduced the consumption of glucose (Figures 2E–G). Accordingly, extracellular acidification rate (ECAR) analysis indicated that treatment with TGF-β1 increased glycolysis and glycolytic activity in primary MLFs, both of which were also reduced by anlotinib (Figures 2H,I). To delineate the mechanisms by which anlotinib inhibits the augmented glycolysis observed in lung myofibroblasts, we assessed the expression of key glycolytic enzymes in these cells. We found that PFKFB3 was induced by TGF-β1 in lung fibroblasts and that anlotinib significantly decreased its expression at the protein level (Figures 2J,K). PFKFB3 is not a rate-limiting glycolytic enzyme; instead, PFKFB3 catalyzes the conversion of fructose-6-phosphate to fructose-2,6-bisphosphate, which is an allosteric activator of PFK1 and a potent stimulator of glycolysis (Atsumi et al., 2002; De Bock et al., 2013). Taken together, these data suggest that anlotinib can abrogate the PFKFB3-driven increase in glycolysis, participating in myofibroblast activation.

TABLE 2

TargetCommon nameUniprot IDChEMBL IDTarget classProbability*Known actives (3D/2D)
Tyrosine-protein kinase receptor UFOAXLP30530CHEMBL4895Kinase0.10616576146472/8
Tyrosine-protein kinase receptor TYRO3TYRO3Q06418CHEMBL5314Kinase0.10616576146453/3
Proto-oncogene tyrosine-protein kinase MERMERTKQ12866CHEMBL5331Kinase0.10616576146446/3
Receptor protein-tyrosine kinase erbB-2ERBB2P04626CHEMBL1824Kinase0.106165761464178/5
Tyrosine-protein kinase BRKPTK6Q13882CHEMBL4601Kinase0.10616576146422/2
Serine/threonine-protein kinase Aurora-BAURKBQ96GD4CHEMBL2185Kinase0.106165761464143/14
Vascular endothelial growth factor receptor 1FLT1P17948CHEMBL1868Kinase0.10616576146479/18
Epidermal growth factor receptor erbB1EGFRP00533CHEMBL203Kinase0.106165761464597/31
Vascular endothelial growth factor receptor 2KDRP35968CHEMBL279Kinase0.106165761464485/95
Tyrosine-protein kinase SRCSRCP12931CHEMBL267Kinase0.106165761464448/42
Hepatocyte growth factor receptorMETP08581CHEMBL3717Kinase0.106165761464314/108
Serine/threonine-protein kinase GAKGAKO14976CHEMBL4355Kinase0.10616576146416/2
Kinesin-1 heavy chain/Tyrosine-protein kinase receptor RETRETP07949CHEMBL2041Kinase0.10616576146472/11
ALK tyrosine kinase receptorALKQ9UM73CHEMBL4247Kinase0.106165761464207/3
Tyrosine-protein kinase ABLABL1P00519CHEMBL1862Kinase0.106165761464127/11
Stem cell growth factor receptorKITP10721CHEMBL1936Kinase0.106165761464106/10
Activin receptor type-1ACVR1Q04771CHEMBL5903Kinase0.10616576146429/1
Vascular endothelial growth factor receptor 3FLT4P35916CHEMBL1955Kinase0.10616576146437/8
Tyrosine-protein kinase receptor FLT3FLT3P36888CHEMBL1974Kinase0.106165761464156/14
Platelet-derived growth factor receptor alphaPDGFRAP16234CHEMBL2007Kinase0.10616576146457/14
Fibroblast growth factor receptor 1FGFR1P11362CHEMBL3650Kinase0.106165761464189/9
TGF-beta receptor type ITGFBR1P36897CHEMBL4439Kinase0.10616576146478/4
Tyrosine-protein kinase LCKLCKP06239CHEMBL258Kinase0.106165761464167/19
Tyrosine-protein kinase BTKBTKQ06187CHEMBL5251Kinase0.10616576146467/5
Tyrosine-protein kinase LynLYNP07948CHEMBL3905Kinase0.10616576146476/6
Fibroblast growth factor receptor 3FGFR3P22607CHEMBL2742Kinase0.10616576146437/3
Platelet-derived growth factor receptor betaPDGFRBP09619CHEMBL1913Kinase0.106165761464114/8
Tyrosine-protein kinase YESYES1P07947CHEMBL2073Kinase0.10616576146434/3
Fibroblast growth factor receptor 2FGFR2P21802CHEMBL4142Kinase0.10616576146435/27
Tyrosine-protein kinase FGRFGRP09769CHEMBL4454Kinase0.10616576146417/4
Macrophage colony stimulating factor receptorCSF1RP07333CHEMBL1844Kinase0.106165761464149/7
Tyrosine-protein kinase BLKBLKP51451CHEMBL2250Kinase0.10616576146420/4
Serine/threonine-protein kinase PLK4PLK4O00444CHEMBL3788Kinase0.10616576146414/2
Ephrin receptorEPHB4P54760CHEMBL5147Kinase0.10616576146430/3
Tyrosine-protein kinase FYNFYNP06241CHEMBL1841Kinase0.10616576146436/3
Dual specificity mitogen-activated protein kinase kinase 2MAP2K2P36507CHEMBL2964Kinase0.10616576146411/3
Tyrosine-protein kinase HCKHCKP08631CHEMBL3234Kinase0.10616576146430/4
Serine/threonine-protein kinase 10STK10O94804CHEMBL3981Kinase0.10616576146413/4
Tyrosine-protein kinase ABL2ABL2P42684CHEMBL4014Kinase0.10616576146413/4
Tyrosine-protein kinase TIE-2TEKQ02763CHEMBL4128Kinase0.10616576146424/16
Ephrin type-A receptor 8EPHA8P29322CHEMBL4134Kinase0.1061657614649/3
Serine/threonine-protein kinase 2SLKQ9H2G2CHEMBL4202Kinase0.10616576146417/4
Tyrosine-protein kinase FRKFRKP42685CHEMBL4223Kinase0.10616576146415/3
Ephrin type-A receptor 6EPHA6Q9UF33CHEMBL4526Kinase0.10616576146410/4
TRAF2- and NCK-interacting kinaseTNIKQ9UKE5CHEMBL4527Kinase0.10616576146420/4
Serine/threonine-protein kinase MST1STK4Q13043CHEMBL4598Kinase0.10616576146411/3
Mitogen-activated protein kinase kinase kinase kinase 5MAP4K5Q9Y4K4CHEMBL4852Kinase0.10616576146412/4
Casein kinase I epsilonCSNK1EP49674CHEMBL4937Kinase0.10616576146412/3
Ephrin type-A receptor 3EPHA3P29320CHEMBL4954Kinase0.10616576146411/3
Tyrosine-protein kinase receptor Tie-1TIE1P35590CHEMBL5274Kinase0.10616576146411/4
Mitogen-activated protein kinase kinase kinase kinase 3MAP4K3Q8IVH8CHEMBL5432Kinase0.10616576146414/3
Serine/threonine-protein kinase SIK2SIK2Q9H0K1CHEMBL5699Kinase0.10616576146412/3
Mitogen-activated protein kinase kinase kinase kinase 1MAP4K1Q92918CHEMBL5749Kinase0.10616576146414/3
Serine/threonine-protein kinase 33STK33Q9BYT3CHEMBL6005Kinase0.10616576146416/4
Mitogen-activated protein kinase kinase kinase kinase 4MAP4K4O95819CHEMBL6166Kinase0.10616576146417/4
Serine/threonine-protein kinase TAO2TAOK2Q9UL54CHEMBL1075195Kinase0.1061657614647/3
Serine/threonine-protein kinase TAO3TAOK3Q9H2K8CHEMBL5701Kinase0.10616576146412/2
Voltage-gated calcium channel alpha2/delta subunit 1CACNA2D1P54289CHEMBL1919Calcium channel auxiliary subunit alpha2delta family0.10616576146415/0
Voltage-gated calcium channel alpha2/delta subunit 2CACNA2D2Q9NY47CHEMBL3896Calcium channel auxiliary subunit alpha2delta family0.1061657614644/0
Receptor protein-tyrosine kinase erbB-4ERBB4Q15303CHEMBL3009Kinase0.10616576146429/3
Mitogen-activated protein kinase kinase kinase 8MAP3K8P41279CHEMBL4899Kinase0.10616576146432/0
Serine/threonine-protein kinase/endoribonuclease IRE1ERN1O75460CHEMBL1163101Enzyme0.10616576146418/1
Macrophage-stimulating protein receptorMST1RQ04912CHEMBL2689Kinase0.1061657614648/11
Serine/threonine-protein kinase Aurora-CAURKCQ9UQB9CHEMBL3935Kinase0.10616576146415/2
Fibroblast growth factor receptor 4FGFR4P22455CHEMBL3973Kinase0.10616576146415/2
Ephrin type-A receptor 7EPHA7Q15375CHEMBL4602Kinase0.1061657614647/3
Dual specificity mitogen-activated protein kinase kinase 5MAP2K5Q13163CHEMBL4948Kinase0.10616576146411/4
Serine/threonine-protein kinase RIPK2RIPK2O43353CHEMBL5014Kinase0.1061657614646/4
Discoidin domain-containing receptor 2DDR2Q16832CHEMBL5122Kinase0.10616576146413/3
Activin receptor type-1BACVR1BP36896CHEMBL5310Kinase0.1061657614646/1
Epithelial discoidin domain-containing receptor 1DDR1Q08345CHEMBL5319Kinase0.10616576146414/4
Mitogen-activated protein kinase kinase kinase kinase 2MAP4K2Q12851CHEMBL5330Kinase0.10616576146415/3
Misshapen-like kinase 1MINK1Q8N4C8CHEMBL5518Kinase0.10616576146414/4
Leukocyte tyrosine kinase receptorLTKP29376CHEMBL5627Kinase0.10616576146410/3
Serine/threonine-protein kinase 35STK35Q8TDR2CHEMBL5651Kinase0.1061657614649/4
Ephrin type-A receptor 1EPHA1P21709CHEMBL5810Kinase0.1061657614649/3
Ephrin receptorEPHB6O15197CHEMBL5836Unclassified protein0.10616576146411/4
Receptor tyrosine-protein kinase erbB-3ERBB3P21860CHEMBL5838Kinase0.1061657614644/3
Serine/threonine-protein kinase MST4STK26Q9P289CHEMBL5941Kinase0.10616576146412/2
Eukaryotic translation initiation factor 2-alpha kinase 1EIF2AK1Q9BQI3CHEMBL6029Kinase0.1061657614643/3
SPS1/STE20-related protein kinase YSK4MAP3K19Q56UN5CHEMBL6191Kinase0.10616576146415/4
Serine/threonine-protein kinase AKT2AKT2P31751CHEMBL2431Kinase0.106165761464318/0
Protein kinase C gammaPRKCGP05129CHEMBL2938Kinase0.10616576146438/0
Serine/threonine-protein kinase AKTAKT3Q9Y243CHEMBL4816Kinase0.10616576146473/0
Serine/threonine-protein kinase PIM1PIM1P11309CHEMBL2147Kinase0.106165761464638/0
Serine/threonine-protein kinase PIM2PIM2Q9P1W9CHEMBL4523Kinase0.106165761464448/0
Serine/threonine-protein kinase PIM3PIM3Q86V86CHEMBL5407Kinase0.106165761464331/0
Cyclin-dependent kinase 2/cyclin E1CCNE1 CDK2P24864 P24941CHEMBL1907605Kinase0.10616576146474/0
Tyrosine-protein kinase JAK1JAK1P23458CHEMBL2835Kinase0.106165761464137/0
Dipeptidyl peptidase VIIIDPP8Q6V1X1CHEMBL4657Protease0.106165761464346/0
Dipeptidyl peptidase IXDPP9Q86TI2CHEMBL4793Protease0.106165761464239/0
Phosphodiesterase 4BPDE4BQ07343CHEMBL275Phosphodiesterase0.10616576146443/0
Protein kinase C iotaPRKCIP41743CHEMBL2598Kinase0.106165761464287/0
Cyclin-dependent kinase 2CDK2P24941CHEMBL301Kinase0.106165761464170/0
Cyclin-dependent kinase 1CDK1P06493CHEMBL308Kinase0.106165761464146/0
Cyclin T1CCNT1O60563CHEMBL2108Other cytosolic protein0.106165761464111/0
Telomerase reverse transcriptaseTERTO14746CHEMBL2916Enzyme0.10616576146479/0
Sodium/calcium exchanger 1SLC8A1P32418CHEMBL4076Electrochemical transporter0.10616576146444/0
Gonadotropin-releasing hormone receptorGNRHRP30968CHEMBL1855Family A G protein-coupled receptor0.106165761464431/0
Amine oxidase, copper containingAOC3Q16853CHEMBL3437Enzyme0.10616576146419/0

Targets of anlotinib obtained through SwissTargetPrediction.

TABLE 3

NumberGeneNumberGeneNumberGeneNumberGene
1CFTR335PDGFA669CPLANE11,003HSPH1
2TGFB1336MIR197670MKI671,004MT-ATP6
3TERT337MIRLET7B671TBX11,005MIR212
4TP53338MIR195672PI31,006CASP10
5TNF339MIR96673BMP41,007PDE5A
6SFTPC340CHI3L1674PMS21,008SH2D1A
7EGFR341MIRLET7E675SLC7A71,009SCN5A
8IL6342MIR16-1676E2F11,010RSPH4A
9MUC5B343MIR199A1677S100A11,011PIK3R2
10RTEL1344MIR210678TKT1,012DNAH9
11IL10345MIR20A679MYRF1,013PSMA7
12SFTPB346MIR378A680LAMA51,014KIF3A
13SFTPA1347THBD681COL2A11,015CYP3A5
14ELN348DMBT1682DEFB11,016LOC111674466
15ABCA3349MIR185683RPL51,017ADM
16CAV1350IL9684SOD11,018PSMC3
17IFNG351CFM1685PLK11,019WDPCP
18MUC1352CD79A686SCGB3A21,020MIR101-1
19SFTPA2353DYNC2LI1687SLC9A3R11,021PRKCB
20SERPINA1354NEK1688IREB21,022IL13RA2
21STAT3355IQCB1689LOC1136641061,023MYH11
22TERC356MIR204690FADD1,024PRKG2
23CCN2357HLA-A691CYP3A41,025SUFU
24IL13358IGF2692HSPB11,026PIK3C2A
25TLR4359FLNA693MAPK141,027PSMC5
26PARN360BCL2694CTSB1,028KCNQ1OT1
27CTNNB1361GSN695IGF2R1,029MIR133A1
28CCR6362MAP2K2696BAP11,030GOPC
29AKT1363BPIFA1697GATA21,031TRAF2
30MIR21364MIR15A698MMP81,032TNFRSF6B
31NKX2-1365EPHX1699ITGAV1,033MIR139
32MMP1366HPS5700PTX31,034LOC111674470
33SMAD4367TRAF3IP1701MSLN1,035IGHMBP2
34ACE368CFTR-AS1702AFF41,036PSMA3
35SPP1369AP3B1703CTCF1,037PSMC6
36CXCL8370GAPDH704ADA1,038GADD45B
37EGF371KRT19705KITLG1,039FKRP
38FASLG372MIR107706ZNF4231,040DNAAF2
39CDH1373CP707IL12A1,041ERCC5
40KRAS374HLA-B708PRKCA1,042E2F3
41SERPINE1375MMP12709EGR11,043PIK3R3
42BRAF376AGER710DLL41,044PRF1
43SMAD3377DDR1711IFNA11,045IFNAR1
44PRTN3378TNNT2712EZR1,046PF4
45PIK3CA379CCL18713LGALS31,047MIR27B
46IL1RN380MIR148B714AFP1,048VTN
47HMOX1381MIR141715TUBB2B1,049DNAJC5
48IL1B382INS716EPCAM1,050BGLAP
49HLA-DRB1383GLI3717APOB1,051MIR455
50FAM13A384JAK2718SPPL2C1,052LOC111674471
51FAS385EVC719CDK21,053CSF3R
52PTEN386HPS3720GDF21,054VCL
53SFTPD387IL33721EPO1,055NAGLU
54ITGAM388NOS2722VCP1,056GUSB
55DSP389SLPI723HSPA81,057NEAT1
56STN1390MIR133B724ATP4A1,058TBX4
57TGFBR1391TCTN3725HBB1,059PSMD1
58SRC392TLR5726SELE1,060PSMD12
59CDKN2A393MUC4727NAT21,061GAST
60ERBB2394MIR93728FGF101,062MIR99A
61CTLA4395MIR18A729BMP71,063CREB1
62NFE2L2396SLC11A1730ETS11,064TRPC6
63MMP9397PSMA6731DEFB4A1,065EPAS1
64MTOR398RNASE3732PRDM101,066MIR125B1
65HRAS399SMAD2733GJA11,067IFNGR1
66TINF2400ICAM1734RPS6KB11,068PGR
67FGFR1401TGFA735JAK31,069TLR1
68COL1A1402RPGR736TP631,070CD40
69NPHP3403ANXA5737HNF1B1,071DLK1
70F2404CXCR1738BBS101,072FOS
71DPP9405IL2739ITGA21,073DNAL1
72TGFB2406GREM1740HOTAIR1,074MAD1L1
73ATP11A407CD274741SGK11,075PSMD11
74HFE408MIR142742DNAAF11,076HBA2
75PDGFRB409GSTP1743DNMT11,077RAB11B
76ITGA3410PHOX2A744DAB21,078CCKBR
77MIRLET7D411SOS2745CDH21,079CLCN3
78MBL2412LMNA746HJV1,080PPARA
79NOTCH1413ENPP2747PRKAA11,081MB
80MET414TOP1748HSPA51,082GAS5-AS1
81TIMP1415APEX1749CHUK1,083LOC111674474
82SERPINH1416CXCL9750SKP21,084KCNJ1
83SCNN1A417PLAU751ILK1,085KIAA0319L
84MMP2418MIRLET7C752ADORA2B1,086PSMA2
85ELANE419MIR30E753SST1,087PSMD3
86VEGFA420MIR214754CFLAR1,088LOC111674473
87PLG421MIR486-1755CCNB11,089ABCF2
88MIR130A422KRT7756ADCY101,090PSMD8
89ADRB2423TNFRSF13B757HDAC91,091MIR590
90KIT424MIR106B758ARG11,092PSMD7
91CC2D2A425MIR181A1759BAK11,093RNF5
92TGFBR2426MTHFR760DICER11,094GLIS3
93PDGFRA427BTNL2761IKBKG1,095CHAT
94IL4428PTPN11762MYH61,096LOC111674476
95NHP2429KDR763COL4A31,097MIR23B
96STK11430ELMOD2764FGA1,098MIR130B
97NOP10431STING1765ABL11,099MIR151A
98ALOX5432THY1766GJA51,100LOC111674478
99TMEM67433MIR140767ARHGAP311,101CD82
100CCL2434VCAM1768FCGR3B1,102E2F2
101MIR34C435CCR2769SLC26A91,103RNF185
102STAT1436CDKN1A770LRBA1,104MIR423
103ALB437STAT4771PMM21,105DEFB103B
104HGF438CEP164772ACD1,106NFKB2
105RPGRIP1L439MIR128-2773CHIT11,107MIR186
106NPHP1440S100A9774CDK61,108AFAP1-AS1
107TSC2441TLR3775CSF11,109PSMC2
108MDM2442SERPINA3776ABCG21,110ERLIN2
109TTC21B443MIR25777CASP11,111GADD45G
110EDN1444CD44778P2RX71,112CS
111WDR19445MALAT1779ASCL11,113CD22
112CRP446COL3A1780VWF1,114PSMB1
113CCL11447CD28781PROM11,115LOC111674479
114AGT448MIR23A782PDPN1,116LOC111674467
115CCND1449MIR19A783PRODH1,117SDHB
116COL1A2450HAMP784ALG91,118LOC111674465
117COPA451MIR429785HOXD131,119PSMD14
118CASP8452MIR335786TNFRSF10A1,120IFNB1
119DKC1453TTR787IL12B1,121PLAT
120ACTC1454C2CD3788BBS91,122PSMA5
121FGFR2455NR1H4789NR3C11,123NEB
122IL17A456G6PD790MIR1221,124CHGA
123SCNN1B457MIR127791ITGB31,125MIR187
124ATM458TNNI3792ERF1,126LOC113523647
125MIR155459CXCL1793CCR51,127HSD3B7
126SHH460MIR424794ADIPOQ1,128LOC108491823
127RB1461IFT52795TF1,129IL4R
128CSF2462ZCCHC8796RXRA1,130PSMB4
129CEP290463AGTR2797FAT41,131DRC1
130FCGR2A464NSMCE3798PSMD41,132MIR361
131PKHD1465TYR799UMOD1,133COL11A2
132NPHP4466ABCB4800TMEM1071,134MIR497
133MIR200B467NOS3801BLOC1S61,135SBDS
134MKS1468LPAR1802MMP141,136TLR6
135SCNN1G469CXCR2803PTK2B1,137MIR339
136FAM111B470ZIC3804PIEZO21,138RECQL4
137FN1471LOC111674475805CDK11,139DERL2
138INVS472CCR7806SIRT31,140SH2B3
139STAT6473ANKS6807IL151,141GUCA2A
140WRAP53474CALR808TAP11,142CCDC103
141FGFR3475TCTN1809GATA61,143PCNA
142RET476MIR224810EPOR1,144PSME2
143NRAS477IGF1R811PVT11,145NCOR1
144DDR2478XRCC1812MUSK1,146TTC37
145FBN1479CD34813ESR21,147PSMB5
146OFD1480EVC2814MAP1B1,148PRKG1
147MAP2K1481CEACAM5815MT-CYB1,149LEPR
148ENG482MIR338816TRAF61,150TNC
149NEK8483GATA4817PKD1L11,151PTGS1
150FGF2484MIRLET7G818RBPJ1,152IFNA2
151MUC5AC485SOD2819DMD1,153DZIP1L
152NFKB1486MIR191820FABP41,154MIR296
153RARB487CCR3821CD801,155CD86
154TNFRSF1A488CXCL5822PSMA41,156MYCL
155IL5489MYLK823IGHE1,157VPS45
156APC490H2AC18824EGFR-AS11,158GBE1
157SMPD1491GPC3825DNMT3B1,159IL7R
158MPO492TMEM138826MIR26A11,160CYP27A1
159ACTA2493MIR377827FLT41,161PLA2G7
160MIR126494CCL22828CCNA21,162NOTCH2
161NOD2495SLC34A2829DNAI21,163CEACAM1
162MIR17496PTPN22830TUG11,164MIR485
163FGF7497PKD2831IFIH11,165LOC113633876
164IFT140498DNAH5832KATNIP1,166REG3A
165KRT18499S100A4833MMP31,167EPRS1
166REN500BAX834KLF61,168LOC113633875
167PDCD1501THPO835BLOC1S31,169LOC113604967
168VEGFC502MIR137836SERPINB11,170ZEB1
169IFT80503FOXJ1837GLA1,171FOXM1
170SCGB1A1504BCL2L1838LPO1,172CASR
171BRCA2505TRPV4839F2R1,173TALDO1
172AHI1506CCR4840BTK1,174MIR219A1
173TCTN2507CADM1841SOCS31,175CCL26
174BMPR2508TMEM237842COL4A21,176LOC113664107
175RAF1509LOC111674463843NBAS1,177CLCN4
176CXCR4510GBA844CEP1041,178SNHG1
177KIAA0586511EZH2845MAGEA41,179LAMA2
178HIF1A512SOX9846DERL11,180TCF7
179FARSB513MIR24-2847AKT31,181TFRC
180TLR2514SPARC848NPPA1,182PLCZ1
181AGTR1515S100A8849BCL2L111,183POMC
182BMP6516LTA850LAMA11,184ABCC3
183CDK4517MKKS851IL31,185CRYAB
184TMEM216518HYDIN852ITGA51,186LOC110806263
185RELA519GLI1853CYP2D61,187MCM4
186CSF3520BIRC5854DOCK61,188TNFSF13B
187CCL5521MAPK3855CANX1,189MIR149
188ESR1522PSMB8856AXIN21,190PLA2G6
189MIR223523AP3D1857SCARB21,191KNG1
190FOXP3524MIRLET7A3858CDX21,192HOTTIP
191TTN525IDH1859SLC9A31,193AR
192MARS1526CYP2E1860ICOS1,194PSMB2
193MAPK8527TNFSF10861PTGER41,195LSM1
194MEG3528PRKCD862SLC17A51,196NIPBL
195CCL3529MIR181C863CXCR51,197PSMA8
196HPS4530CYCS864TCTEX1D21,198IL16
197BRCA1531IFT27865MXRA51,199CCAT1
198IL2RA532TUBB3866FOXP11,200SPRY2
199HPS1533HP867MIR138-11,201RIPK1
200MIR34A534ALMS1868CLDN11,202PHKG2
201MIR200C535NOX4869MIR1541,203MIR503
202B9D1536RYR1870INSR1,204GSTT1
203Dnase1537TSLP871UCHL11,205PRKCI
204TSC1538VDAC1872DCN1,206AGL
205WDR35539U2AF1873XPNPEP31,207RAG2
206WT1540CAT874KRT131,208HNF1A-AS1
207INPP5E541CALCA875COMT1,209CCAT2
208MPL542DNAH11876EDNRA1,210ERLIN1
209MIR125A543NF1877CA41,211MIR125B2
210CSPP1544PTK2878HLA-DQA11,212MIR15B
211GRP545SP110879BBS121,213CREBBP
212MIR144546IL12RB1880KRT81,214CTSL
213RTEL1-TNFRSF6B547NQO1881CMA11,215NR5A1
214SERPINC1548GAA882AKR1B101,216MSR1
215CD4549MIR409883LOC1136338771,217UTP4
216DYNC2H1550VIP884CEP551,218MIR301A
217MIR145551GPT885MAP2K41,219MUC7
218FLT1552MIR708886CDK51,220CASC2
219TNFRSF1B553NFKBIA887P2RY21,221ZNRD1ASP
220MIR29A554KEAP1888NLRP31,222PLCG2
221HLA-DQB1555LOC111674477889PSMC41,223MIR124-1
222FHIT556CD36890HSPA41,224MIR382
223H19557IGFBP3891AVPR21,225LAMP1
224PKD1558NKX2-5892RPS27A1,226CD69
225SOS1559CEP83893MIR3751,227DANCR
226SPINK1560BDNF894MIR33A1,228TP53COR1
227MIR31561ABCB11895ATF61,229MYL3
228IFT172562FGFR4896RXRB1,230CYSLTR2
229MMP7563CTSG897UBC1,231SELL
230CD8A564ITGB1898NPC21,232LINC-ROR
231PDGFB565CSF2RA899CLCN21,233NOS1
232SLC2A1566DNAI1900FOXE11,234IFT20
233JUN567ARL3901MIR1321,235MIR10B
234BMP2568MECP2902HDGF1,236CD81
235HMGB1569CDKN1B903WNT7B1,237ANTXR1
236ERBB3570DNMT3A904SLC9A3R21,238PRSS2
237MIR150571VHL905H2AX1,239SNHG20
238PRSS1572THBS1906PRKAG21,240MIR95
239MIR29C573YAP1907SERPINB31,241GALC
240MIR146B574TIMP2908LRP1B1,242DGCR5
241ABCC1575TOLLIP909DNAAF31,243HNMT
242BBS2576KCNK3910BCL101,244SLCO2A1
243ABCB1577NOTCH3911RAG11,245MLH1
244CXCL10578RASSF1912LAMA41,246PLA2G2A
245XIAP579SP1913HLA-G1,247MME
246KIF21A580RHOA914PSMB31,248TYMS
247PIK3R1581ABCC2915SIRT11,249MIR198
248BBS1582IKBKB916MIRLET7A11,250JAK1
249IRF1583GZMB917PLA2G1B1,251PDE4D
250IL1A584LEP918KDM4C1,252LAMC2
251PTPRC585BBS5919MUC61,253AHR
252HLA-DPB1586APOE920TUBB11,254TPM1
253ERCC6587NHLRC2921SKIV2L1,255MT-CO2
254STX1A588NPPB922TPM21,256ASCC1
255SETD2589SYP923CCDC401,257EOGT
256CCL17590ACTB924TET21,258CCL7
257IDH2591PSMA1925TRIP111,259TRPM4
258CXCL12592PTCH1926ITGA2B1,260GPSM2
259MIR27A593LOXL2927ENO21,261TARS1
260GSTM1594CEP41928EIF2AK31,262TPM3
261DCTN4595MYPN929RSPH91,263CD14
262PRKN596CR1930MIR193A1,264MIR216A
263CXCR3597ERCC1931PXN1,265CTAG1B
264MIR200A598IGFBP5932DNAAF51,266MIR22HG
265ARL13B599MGMT933LAT1,267MIR10A
266PTGS2600VIM934RSPH11,268PCAT1
267MIR148A601ENO1935CDKN2B-AS11,269SNHG15
268MYC602NLRC4936ADORA11,270BANCR
269IGF1603PIK3CG937RAD511,271PSAP
270IL18604MYH7938DIABLO1,272IL11
271CYP1A1605F13A1939TFR21,273MIR362
272NEK9606WNT4940RSPO21,274UCA1
273LOX607NME1941C4A1,275UBE2L3
274MIR30D608CD63942IFI271,276FBLN5
275MIR146A609RPGRIP1943MIR29B11,277GC
276IFT122610ATP8B1944HSPD11,278TP73-AS1
277B9D2611GNAS945CCDC391,279PPBP
278KCNQ1612TUBB946PDE4A1,280LINC00473
279CYP2A6613IFRD1947TRIM211,281SOX2-OT
280MIR483614CASP9948PLCG11,282MIR181B1
281MIR183615LAMP2949IL1RL11,283XIST
282IL1R1616HDAC2950BBIP11,284MIR129-1
283SDCCAG8617ANXA1951MIR196A11,285PRL
284PTRH2618IFT74952BAD1,286MIR193B
285MIR182619ROS1953MYBPC31,287NR3C2
286CDKN3620CLEC7A954ARAF1,288MYL1
287GUCY2C621AKT2955VDR1,289SDC1
288MIR222622WRN956MAGEA11,290MIR24-1
289LOC111674472623DTNBP1957TAC11,291PHB
290KIF7624CD19958IDUA1,292MYL2
291FLNC625SMARCA4959EPX1,293APOA1
292PPARG626ANGPT2960ASXL11,294SNHG12
293XRCC3627PARP1961MAGEA31,295CEP57
294SNAI1628BBS7962RAC11,296IL6R
295POSTN629MIF963GATA11,297SERPINF2
296MIR192630SELP964GAS51,298CALB2
297JAG1631HSPG2965MIR9-11,299MIR152
298CD40LG632ATP12A966RYR21,300ADK
299DYNC2I1633HSP90AA1967JPH21,301NRG1
300ACVRL1634CHRM3968RIOX21,302MIR501
301MIR221635MVP969LOC1116744641,303GPRC5A
302IFT43636DCDC2970TNFAIP31,304LZTR1
303DES637ERCC2971PIK3CB1,305TLR7
304MIR22638PPP2R1B972DHCR71,306POT1
305TNFRSF10B639TYMP973C1S1,307EP300
306IRF5640CLCA1974SNAI21,308FBL
307ALK641OGG1975ERBB41,309PLOD2
308CEP120642MCL1976ACVR11,310DLL1
309MIR451A643CCN4977NPC11,311TOP2A
310DYNC2I2644F3978LNX11,312MAGEC2
311CASP3645STAT5B979GRB21,313MIR499A
312CCL4646FUZ980TFAP2B1,314ENSG00000266919
313HPS6647LBR981SLC6A41,315TNFRSF11B
314MIR143648CXCL2982IFT881,316HOXA11-AS
315ICOSLG649PLAUR983NPHS11,317RASGRP1
316CLCA4650ASAH1984MAP2K71,318SPRY4-IT1
317HLA-DPA1651BPI985PSMD21,319FIP1L1
318FOXF1652NPM1986DNAH81,320GSR
319BIRC3653ACTA1987B2M1,321CST3
320SMAD7654ANGPT1988INTU1,322LTBP4
321MIR203A655GGT1989ENTPD11,323ZFAS1
322MIR30A656CAMP990PRSS81,324F5
323MIR324657SOD3991CCNE11,325STMN1
324MIR199B658F2RL3992LRRC561,326AIRE
325ACP5659TEK993MAP3K81,327RETN
326MIR205660LTF994SHC11,328NTS
327TP73661MT-CO1995CCDC1141,329KRT5
328TLR9662LIPA996ACHE1,330F2RL1
329MAPK1663WNT3997TBX201,331TNFSF11
330CLCN5664GDF1998AURKB1,332COL4A5
331TMEM231665SLC40A1999ASL1,333PIK3CD
332BBS4666GLIS21,000MIR30C11,334FGF9
333RMRP667AREG1,001IL2RB1,335KRT20
334TGFB3668CDKN2B1,002NCF2

Lung fibrosis-related targets obtained from the GeneCards database.

FIGURE 2

FIGURE 2

Anlotinib inhibits PFKFB3-driven glycolysis in lung myofibroblasts. (A) Venn diagram to show the overlaps between anlotinib targets and lung fibrosis-related targets. (B) Protein-protein interaction (PPI) network of common targets between anlotinib and IPF. (C) The KEGG enrichment analysis of 74 targets of common targets. (D)The GO enrichment for each section listed. The mouse lung fibroblasts were pretreated with anlotinib (1 µM) for 3 h and then exposed to TGF-β1 (10 ng/ml) for an additional 24 h, and then the cells were lysed and lactate contents in the cellular lysates (E) and culture media (F) were determined. The data are presented as fold change relative to the levels of the untreated control group (mean ± SD, n = 3). (G) Glucose uptake detected with 2-NBDG were determined. The data are presented as fold change relative to the levels of the untreated control group (mean ± SD, n = 3). (H) Extracellular acidification rate (ECAR) was assessed. (I) Glycolysis and glycolysis capacity were quantified and shown as histograms (mean ± SD, n = 3). (J) Western blot analysis of HK2、PKM2、PFKFB3、LDHA and LDHB, β-actin was used as a loading control. (K) Quantification of HK2、PKM2、PFKFB3、LDHA and LDHB protein levels relative to β-Actin is shown (mean ± SD, n = 3). I, K, *p < 0.05, **p < 0.01, ***p < 0.001 VS TGF-β1-treated group by ANOVA.

TABLE 4

NumberGeneNumberGene
1AXL38EPHA3
2MERTK39TIE1
3ERBB240CACNA2D1
4AURKB41ERBB4
5FLT142MAP3K8
6EGFR43ERN1
7KDR44MST1R
8SRC45FGFR4
9MET46EPHA7
10RET47MAP2K5
11ALK48RIPK2
12ABL149DDR2
13KIT50ACVR1B
14ACVR151DDR1
15FLT452MAP4K2
16FLT353EPHA1
17PDGFRA54EPHB6
18FGFR155ERBB3
19TGFBR156EIF2AK1
20BTK57MAP3K19
21LYN58AKT2
22FGFR359PRKCG
23PDGFRB60AKT3
24YES161PIM1
25FGFR262PIM2
26FGR63JAK1
27CSF1R64DPP8
28BLK65DPP9
29PLK466PDE4B
30FYN67PRKCI
31MAP2K268CDK2
32HCK69CDK1
33STK1070CCNT1
34ABL271TERT
35TEK72SLC8A1
36SLK73GNRHR
37STK474AOC3

Common targets shared between the potential anlotinib targets and lung fibrosis-related targets.

PCBP3 Posttranscriptionally Increases PFKFB3 Expression by Promoting Its Translation During Myofibroblast Activation

Interestingly, the progressive upregulation of PFKFB3 during myofibroblast activation induced by TGF-β1 that was observed at the protein level was not confirmed at the mRNA level, as measured by RT-PCR (Supplementary Figures S3A, B). These results indicate that TGF-β1-induced overexpression does not require de novo transcription of PFKFB3. To further verify these findings, primary MLFs were incubated with cycloheximide to block new protein synthesis, and immunoblotting was used to measure PFKFB3 levels (Figure 3A). The half-life of PFKFB3 was not significantly altered, indicating that TGF-β1 does not influence PFKFB3 protein stability. Therefore, we postulated that PFKFB3 upregulation is modulated through posttranscriptional mechanisms in this context. To verify this hypothesis, we used the online tool catRAPID to screen for potential proteins that may interact with PFKFB3 mRNA and identified that PCBP3 (Table 5) (Agostini et al., 2013; Livi et al., 2016), a member of the PCBP family, has a high probability of directly interacting with PFKFB3 mRNA (Figure 3B) (Choi et al., 2007; Kang et al., 2012; Leidgens et al., 2013; Wang J. et al., 2020). We comparatively analyzed the expression of PCBP3 after treatment with different doses of TGF-β1 by immunoblot analysis and found that PCBP3 protein expression was increased in primary MLFs after TGF-β1 treatment (Figures 3C,D), which correlated with PFKFB3 overexpression. To better define the connection between PCBP3 function and PFKFB3, we performed RNA-protein coimmunoprecipitation (RIP) studies in primary MLFs transfected with FLAG-tagged PCBP3 (FLAG-PCBP3). An antibody targeting the FLAG protein was used to immunoprecipitate FLAG-PCBP3 and any interacting molecules from the cell lysates. Reverse transcription followed by PCR was then used to identify individual PFKFB3 mRNAs isolated with FLAG-PCBP3. We found that PFKFB3 transcripts were enriched by PCBP3 coimmunoprecipitation compared to control IgG coimmunoprecipitation (Figure 3E), demonstrating that PFKFB3 mRNA is indeed a direct target of PCBP3 in MLFs. To test the possibility that PCBP3 may influence PFKFB3 translation, we performed polysome analysis in cells transfected with FLAG-PCBP3. Cytoplasmic lysates were fractionated through sucrose gradients to separate ribosomal subunits (40S and 60S), monosomes (80S) and progressively larger polysomes. RNA was extracted from each of the 12 fractions, and the levels of PFKFB3 and β-actin mRNA were quantified by quantitative RT-PCR. While PFKFB3 mRNA levels peaked in fraction 7 in control cells, the distribution of PFKFB3 mRNA shifted rightward when PCBP3 was overexpressed, peaking in fraction 9, indicating that PFKFB3 mRNA formed, on average, larger polysomes after PCBP3 overexpression (Figure 3F). The distribution of β-actin mRNA was not affected by PCBP3 overexpression. These results indicated that overexpression of PCBP3 increases the translation of PFKFB3. Overall, these results suggest that PCBP3 improves PFKFB3 expression levels by increasing its translation rather than by influencing its protein stability.

FIGURE 3

FIGURE 3

PCBP3 posttranscriptionally increases PFKFB3 expression by promoting its translation during myofibroblast activation. (A) PFKFB3 degradation in mouse lung fibroblasts when protein synthesis was inhibited by 50 μM cycloheximide (mean ± SD, n = 3). (B) Prediction of RNA–protein interaction of PFKFB3 mRNA with PCBP3 protein using the catRAPID algorithm. Red represents interaction strength. (C) Western blot analysis of PFKFB3 and PCBP3 protein levels in mouse lung fibroblasts stimulated with TGF-β1 for the indicated concentrations. (D) Quantification of PFKFB3 and PCBP3 protein levels relative to β-actin is shown (mean ± SD, n = 3, **p < 0.01, ***p < 0.001 compared with 0 by one-way ANOVA). (E) Quantitative RT-PCR (qPCR) to show the effect of PCBP3 overexpressing on PFKFB3 RNA immunoprecipitation (RIP) in mouse lung fibroblasts. Values were plotted as mean ± SD from three independent experiments. p value was calculated by Student t test. ***p < 0.001. (F) Mouse lung fibroblasts expressing Flag-PCBP3 were fractionated into cytoplasmic extracts through sucrose gradients. The arrow indicates the direction of sedimentation. The distribution of PFKFB3 and β-actin mRNAs was quantified by RT-PCR analysis of RNA isolated from 12 gradient fractions. Statistical analyses were performed using Student t test. ***p < 0.001. (G) Mouse lung fibroblasts were transfected with Flag-PCBP3, and then transfected with PFKFB3-siRNAs or NC-siRNA. The levels of Fibronectin、Collagen I、PFKFB3、α-SMA、PCBP3 and β-actin assessed by western blot. (H) Graphical representation of the relative levels of indicated proteins (mean ± SD, n = 3, *p < 0.05, **p < 0.01, ***p < 0.001 by ANOVA).

TABLE 5

#Protein DRNA IDZ score?Discriminative power (%)?Interaction strength (%)?Domain?Motif?Ranking?
1ELAV1_MOUSE_247-308NC_000068.7:c11_1_5924-6036−0.135098yesyes
2ELAV1_MOUSE_247-308NC_000068.7:c11_1_26816-27008−0.086799yesyes
3ELAV1_MOUSE_247-308NC_000068.7:c11_1_15806-15983−0.234090yesyes
4PCBP3_MOUSE_301-351NC_000068.7:c11_1_41382-41564−0.691413yesyes
5ELAV1_MOUSE_247-308NC_000068.7:c11_1_77223-77340−0.472274yesyes
6ELAV1_MOUSE_247-308NC_000068.7:c11_1_10399-10532−0.502064yesyes
7ELAV1_MOUSE_109-176NC_000068.7:c11_1_5924-6036−0.145098yesyes
8ELAV1_MOUSE_109-176NC_000068.7:c11_1_45706-45815−0.392685yesyes
9ELAV1_MOUSE_109-176NC_000068.7:c11_1_26816-27008−0.046399yesyes
10ELAV1_MOUSE_109-176NC_000068.7:c11_1_15806-15983−0.244090yesyes
11ELAV1_MOUSE_109-172NC_000068.7:c11_1_5924-6036−0.154797yesyes
12ELAV1_MOUSE_109-172NC_000068.7:c11_1_45706-45815−0.402685yesyes
13ELAV1_MOUSE_109-172NC_000068.7:c11_1_15806-15983−0.263787yesyes
14PCBP3_MOUSE_301-351NC_000068.7:c11_1_77461-77636−0.71149yesyes
15PCBP3_MOUSE_301-351NC_000068.7:c11_1_66050-66214−0.661417yesyes

Potential proteins may interact with PFKFB3 mRNA through the catRAPID algorithm.

To determine the functional impact of PCBP3-mediated regulation of PFKFB3 expression in lung fibrosis, we transfected lung fibroblasts with FLAG-PCBP3. Expression of PFKFB3 was significantly increased by PCBP3 overexpression compared to that of the empty vector control. Reliable markers of the phenotypic transformation of fibroblasts into myofibroblasts, fibronectin, collagen I and α-SMA, were markedly increased in FLAG-PCBP3-treated cells at the protein level (Figures 3G,H) compared with vector-treated cells. In turn, using small interfering RNA (siRNA) to silence PFKFB3, the FLAG-PCBP3-induced overexpression of fibronectin, collagen I and α-SMA was abolished (Figures 3G,H). These findings suggest that PCBP3 protein upregulation is an early and sustained event during fibroblast activation and that the profibrogenic effects of PCBP3 are mediated by PFKFB3 expression. Taken together, these data suggest that PCBP3 posttranscriptionally increases PFKFB3 expression by promoting its translation during myofibroblast activation.

Anlotinib Represses PCBP3 Expression Levels During Myofibroblast Activation

To confirm the regulation of PCBP3 by anlotinib in vitro, we evaluated the protein expression of PCBP3 in MLFs and IMR90 cells. We found that TGF-β1 induced the expression of PCBP3 in MLFs and that anlotinib prevented PCBP3 expression by immunofluorescence analysis (Figure 4A). Western blot analysis of PCBP3 showed a similar result (Figures 4B,C) in MLFs, and these results were confirmed in the human IMR90 cell line (Figures 4D,E). Taken together, these data suggest that anlotinib can repress PCBP3 expression levels during myofibroblast activation in vitro.

FIGURE 4

FIGURE 4

Anlotinib represses PCBP3 expression levels during myofibroblast activation. (A) Immunofluorescence for PCBP3 (green) in mouse lung fibroblasts treated with anlotinib for 3  h, followed by TGF-β1 for an additional 24 h. DAPI-stained nuclei (blue). Scale bar, 25 µm. (B) Western blots analysis of PCBP3 and β-actin in primary mouse lung fibroblasts. (C) Quantification for the indicated proteins (mean ± SD, n = 3). (D) The Western blots analysis of PCBP3 and β-actin in IMR90 cells treated with anlotinib for 3  h, followed by TGF-β1 for an additional 24 h. (E) Quantification for the indicated proteins (mean ± SD, n = 3). *p < 0.05, **p < 0.01, ***p < 0.001 VS TGF-β1-treated group by ANOVA.

Anlotinib Attenuates Bleomycin-Induced Pulmonary Fibrosis

To investigate the biological effects of anlotinib on pulmonary fibrosis in vivo, we established a bleomycin (BLM)-induced mouse model of pulmonary fibrosis. The mice were intraperitoneally injected with 1 mg/kg anlotinib daily after BLM administration (Figure 5A). From the first week after bleomycin instillation, the bleomycin-treated mice showed a certain reduction in activity, accompanied by slight shortness of breath. 21 days after bleomycin administration, bleomycin-treated mice showed obvious hyperventilation, accompanied by reduced activity and weight loss, but no similar symptoms were observed in the control group. A single dose of BLM (5 mg/kg) administered by intratracheal instillation successfully induced pulmonary fibrosis in C57BL/6 mice, as evidenced by a decline in pulmonary function, decreased tidal volume (TV, Figure 5B) and dynamic compliance (Cdyn, Figure 5C), and increased lung resistance (RI, Figure 5D). However, treatment with anlotinib significantly reversed bleomycin-induced pulmonary dysfunction. Moreover, we evaluated collagen deposition in the lung tissues by analyzing the hydroxyproline (HYP) content and found that anlotinib treatment reduced the amount of collagen in the lungs of bleomycin-treated mice (Figure 5E). Hematoxylin and eosin (H&E) staining indicated that anlotinib-treated mice had decreased lung inflammation and reduced lung architectural damage (Figure 5F). Accordingly, Masson’s trichrome staining showed decreased collagen deposition in anlotinib-treated mice compared with vehicle-treated mice (Figure 5F). Furthermore, attenuated fibrosis was supported by decreased protein levels of fibronectin and α-SMA by immunohistochemical (IHC) staining (Figure 5G). We also found that anlotinib treatment reduced fibronectin, collagen I and α-SMA expression by western blotting (Figures 5H,I). Taken together, these data show that anlotinib attenuates bleomycin-induced pulmonary fibrosis in vivo.

FIGURE 5

FIGURE 5

Anlotinib attenuates bleomycin-induced pulmonary fibrosis. (A) Intervention dosing regimen of anlotinib in experimental mouse model of fibrosis. C57BL/6 mice were intraperitonealy injuected with 1 mg/kg of anlotinib or vehicle (n = 5-6 per group) daily after bleomycin instillation. Lungs were harvested at 21 days for the following analyses. Analysis of tidal volume (TV) (B), dynamic compliance (Cdyn) (C), and lung resistance (RI) (D) (mean ± SD, n = 5). (E) Hydroxyproline (HYP) contents in lung tissues from mice (mean ± SD, n = 5). Representative images show haematoxylin and eosin (H&E), Masson’s trichrome (F), α-SMA and Fibronectin staining (G) of lung sections from the indicated groups of mice. Scale bars, 100 µm. (H) Western blot analysis of Fibronectin、Collagen I and α-SMA, β-actin was used as a loading control. (I) Quantification of Fibronectin、Collagen I and α-SMA protein levels relative to β-actin is shown (mean ± SD, n = 6). *p < 0.05, **p < 0.01, ***p < 0.001 VS BLM-treated group by one-way ANOVA.

Anlotinib Decreases PCBP3 Expression and Inhibits PFKFB3-Driven Glycolysis in Fibrotic Rodent Lungs

We next examined whether the levels of PCBP3 were regulated by anlotinib in vivo. We evaluated the expression of PCBP3 in lung tissues and found that the protein levels of PCBP3 were markedly increased after bleomycin instillation, while anlotinib treatment decreased PCBP3 expression (Figures 6A,B). Accordingly, IHC staining showed decreased PCBP3 protein levels in anlotinib-treated mice compared with vehicle-treated mice (Figure 6C). In addition, to confirm the regulation of PFKFB3-driven glycolysis by anlotinib in vivo, we measured the levels of lactate and the expression of PFKFB3 in the lungs of mice. We found that there were significantly higher levels of lactate in the lungs of bleomycin-treated mice than in the lungs of control mice, and anlotinib decreased lactate levels (Figure 6D). Western blot and IHC staining studies revealed that bleomycin-induced PFKFB3 expression in the lungs of mice was prevented by anlotinib (Figures 6E–G). Overall, these results suggest that anlotinib decreases PCBP3 expression and inhibits PFKFB3-driven glycolysis in fibrotic rodent lungs.

FIGURE 6

FIGURE 6

Anlotinib decreases PCBP3 expression and inhibit the PFKFB3-driven glycolysis in fibrotic rodent lungs. (A) Intervention dosing regimen of anlotinib in experimental mouse model of fibrosis. C57BL/6 mice were intraperitonealy injuected with 1 mg/kg of anlotinib or vehicle (n = 5-6 per group) daily after bleomycin instillation. Lungs were harvested at 21 days. Western blot analysis of PCBP3, β-actin was used as a loading control (n = 6). (B) Quantification of PCBP3 protein levels relative to β-actin is shown (mean ± SD, n = 6). (C) Representative images show PCBP3 staining of lung sections from the indicated groups of mice. Scale bars, 100 µm. (D) lactate contents in lung tissues from mice (mean ± SD, n = 5). (E) Western blot analysis of PFKFB3, β-actin was used as a loading control (n = 6). (F) Quantification of PFKFB3 protein levels relative to β-actin is shown (mean ± SD, n = 6). (G) Representative images show PFKFB3 staining of lung sections from the indicated groups of mice. Scale bars, 100 µm. **p < 0.01, ***p < 0.001 VS BLM-treated group by one-way ANOVA.

Anlotinib Accelerates the Resolution of Bleomycin-Induced Lung Fibrosis

We demonstrated that anlotinib treatment could attenuate bleomycin-induced pulmonary fibrosis. In that in vivo experiment, anlotinib was administered at approximately the same time as bleomycin instillation. We further examined whether anlotinib could postpone the progression of established fibrosis. Therefore, we performed another in vivo experiment in which anlotinib was intraperitoneally injected 7 days after bleomycin instillation (Figure 7A). As interventions beginning 7 days post bleomycin were classified as therapeutic (Izbicki et al., 2002; Moeller et al., 2008), we initially treated mice with anlotinib (1 mg/kg/day or 2 mg/kg/day) beginning on day 7 after bleomycin instillation. Pulmonary function tests showed that anlotinib treatment reversed the bleomycin-induced decline in pulmonary function, with increases in TV (Figure 7B) and Cdyn (Figure 7C) and a decrease in RI (Figure 7D). HYP measurements showed that the collagen content was significantly decreased in anlotinib-treated mice compared with vehicle-treated mice (Figure 7E). H&E staining and Masson’s trichrome staining of lungs collected at day 21 showed enhanced recovery from fibrosis upon anlotinib treatment (Figure 7F). Correspondingly, IHC staining showed that anlotinib treatment reduced fibronectin and α-SMA expression in the lungs (Figure 7G). Western blot analysis also showed that anlotinib decreased the protein levels of fibronectin, collagen I and α-SMA in the lungs (Figures 7H,I). Collectively, these data clearly demonstrate that anlotinib accelerates fibrosis resolution in vivo even after the establishment of fibrosis.

FIGURE 7

FIGURE 7

Anlotinib accelerates resolution of bleomycin-induced pulmonary fibrosis. (A) Intervention dosing regimen of anlotinib in established pulmonary fibrosis. Bleomycin instillation was used to induce fibrosis and no treatment was given during the first 7 d. Then, mice were intraperitonealy injuected with 1 or 2 mg/kg of anlotinib or vehicle (n = 5-6 per group) daily. Lungs were harvested at 21 days. Tidal volume (TV) (B), dynamic compliance (Cdyn) (C), and lung resistance (RI) (D) of mice were measured (mean ± SD, n = 5). (E) HYP contents in lung tissues from mice (mean ± SD, n = 5). Representative images show H&E, Masson’s trichrome (F), α-SMA and Fibronectin staining (G) of lung sections from the indicated groups of mice. Scale bars, 100 µm. (H) Western blot analysis of Fibronectin、Collagen I and α-SMA, β-actin was used as a loading control (n = 4). (I) Quantification of Fibronectin、Collagen I and α-SMA protein levels relative to β-actin is shown (mean ± SD, n = 5). *p < 0.05, **p < 0.01, ***p < 0.001 VS BLM-treated group by one-way ANOVA.

Discussion

Despite recent advances in our understanding of IPF pathology, there is still no curative treatment for this disease; indeed, the currently available antifibrotic treatment modalities slow but do not completely stop the progression of the disease (Spagnolo and Maher, 2017). In this study, we demonstrate that anlotinib strongly inhibits fibroblast-to-myofibroblast transdifferentiation and reduces extracellular matrix production in primary MLFs and in the human IMR90 cell line. Accordingly, preventative and therapeutic administration of anlotinib to bleomycin-administered mice resulted in accelerated resolution of fibrosis. No adverse, systemic side effects were observed. Here, we demonstrate a novel mechanism by which anlotinib exerts antifibrotic effects by downregulating PCBP3, reducing PFKFB3 translation and inhibiting glycolysis in myofibroblasts (Figure 8).

FIGURE 8

FIGURE 8

Schematic representation of PCBP3-PFKFB3-dependent glycolysis and the inhibitory effect of anlotinib on this pathway. Lung injury induces PCBP3 expression, which results in an increase in PFKFB3 expression by promoting its translation, resulting in the augmentation of glycolysis in lung fibroblasts. Glycolytic reprogramming participates in myofibroblast activation and furthers lung fibrosis. The tyrosine kinase inhibitor anlotinib inhibits PFKFB3-driven glycolysis by decreasing the expression of PCBP3, thereby suppressing myofibroblast activation and inhibiting the exacerbation of lung fibrosis.

A previous study revealed that male and female C57BL/6 mice did not differ in terms of their lung fibrotic responses, including cellular infiltration, collagen deposition, and quantifiable morphological changes in the lung architecture, but that the bleomycin-induced decrease in static compliance was significantly greater in males than in females (Voltz et al., 2008). This adverse effect on lung function was found to be due to male sex hormones. So sex differences should be carefully considered when interpreting experimental models of pulmonary fibrosis in mice (Blaauboer et al., 2014). In our study, we used only female mice to avoid the sex differences. We found that anlotinib exerted the preventative effects on bleomycin model of pulmonary fibrosis. Furthermore, anlotinib can also accelerate fibrosis resolution after the establishment of fibrosis.

A recent report showed that anlotinib inhibits the profibrotic effect of TGF-β1 in lung fibroblasts by attenuating inflammation and oxidative stress (Ruan et al., 2020). Our data are in line with that report and reveal an additional mechanism by which anlotinib acts on lung fibroblasts to attenuate fibrosis. There is emerging evidence about the association between metabolic disorders and IPF (Yin et al., 2019; Cho et al., 2020; Hu et al., 2020). Similar to highly proliferative cancer cells, myofibroblasts are highly dependent on glycolysis in vitro (Bueno et al., 2020). Furthermore, glycolysis is necessary not only for fibroblast growth and migration but also for the acquisition and maintenance of a myofibroblastic phenotype (Xu et al., 2017; Para et al., 2019). A previous study revealed that inhibition of glycolysis by the PFKFB3 inhibitor 3PO or by genomic disruption of the PFKFB3 gene blunted the differentiation of lung fibroblasts into myofibroblasts and attenuated profibrotic phenotypes in myofibroblasts (Xie et al., 2015). Another study revealed that lung fibroblasts displayed augmented aerobic glycolysis through activation of the PI3K-Akt-mTOR/PFKFB3 pathway in LPS-induced pulmonary fibrosis (Hu et al., 2020). Our data, along with previous studies, demonstrated that glycolytic reprogramming was critical to lung myofibroblast activation and pulmonary fibrosis. Furthermore, we demonstrated that anlotinib could strongly inhibit glycolytic reprogramming in vitro and in vivo.

The results presented herein provide new insights into the molecular mechanisms of lung fibrogenesis. This work unveils a previously unrecognized posttranscriptional regulation in activated lung fibroblasts composed of the RNA binding protein PCBP3 and the critical glycolytic enzyme PFKFB3, which maintains fibroblasts with higher glycolytic activity in fibrotic lungs compared to normal lung fibroblasts in healthy lungs. PCBP family members perform multiple functions by binding to the poly(C) sequence in both DNA and RNA to modulate mRNA stabilization, translation silencing, or translation enhancement (Blyn et al., 1997; Andino et al., 1999; Ostareck et al., 2001). Our present findings showing that PCBP3 plays an important role in myofibroblast activation and fibrogenesis and significantly extends our previous understanding by identifying an additional node of interaction between PCBP3-mediated posttranscriptional dysregulation and lung disease. We found that PFKFB3 protein overexpression was not accompanied by PFKFB3 mRNA upregulation, indicating that this increase was not transcriptionally derived. Instead, we observed that high PFKFB3 protein levels were maintained during fibroblast transdifferentiation, owing to PCBP3-mediated translational activation. Thus, the PCBP3 protein is upregulated during myofibroblast activation and binds directly to PFKFB3 during transcription. This binding activates PFKFB3 mRNA translation and generates high levels of the glycolysis activator PFKFB3. This mechanism does not exclude additional pathways of regulating PFKFB3 expression. Hence, it is not unusual for key proteins to be regulated at multiple levels, including through transcription, translation, and posttranslational modifications.

Our study is the first to report that anlotinib inhibits PFKFB3-mediated glycolysis in myofibroblasts. Moreover, anlotinib attenuates glycolysis in myofibroblasts by repressing PCBP3 expression levels rather than directly regulating the expression of PFKFB3, as anlotinib treatment does not decrease the mRNA levels of PFKFB3. Our work contributes novel mechanistic insight into the action of anlotinib. However, one of the limitations of this study is that we didn’t knock out PCBP3/PFKFB3 in mice to verify their effects in lung fibrosis, which may be explored in the further research. This future direction may be important to better understand how PCBP3 regulates PFKFB3-mediated glycolysis in pulmonary fibrosis. The other one is that this study only used bleomycin mice model for the research. Although the bleomycin model is the most widely used and best-characterized mouse model, the fibrosis of the bleomycin model is self-resolving, which contrasts with the progressive chronic fibrosis typical of human IPF (Liu et al., 2017). Therefore, whether anlotinib could attenuate fibrosis in human IPF still requires ex vivo models of pulmonary fibrosis.

In conclusion, our study demonstrated a clear antifibrotic role for anlotinib in the lungs. Its antifibrotic activity is mediated by its ability to decrease PCBP3 expression and attenuate PFKFB3-driven glycolysis, thereby inhibiting myofibroblast activation. Anlotinib might be considered as a potential therapeutic option for IPF patients.

Statements

Data availability statement

The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding authors.

Ethics statement

The animal study was reviewed and approved by Southern Medical University Institutional Animal Care and Use Committee.

Author contributions

WC, JZ, and WZ performed study concept and design; YL, YL, and ZZ performed development of methodology and writing; HH and XW provided acquisition, analysis and interpretation of data, and statistical analysis; XM and FZ provided technical and material support; SC and HD performed review and revision of the paper.

Funding

This work was supported by National Natural Science Foundation of China (No. 81870058, 81600648, 81970032, and 81870058), National Natural Science Foundation of Guangdong Province (NO. 2017A030313849).

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Supplementary material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fphar.2021.744826/full#supplementary-material

Abbreviations

IPF, idiopathic pulmonary fibrosis; BLM, bleomycin; RBP, RNA binding protein; α-SMA, α-smooth muscle actin; ECM, extracellular matrix; PFKFB3, 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase-3; F2, 6BP, fructose-2, 6-bisphosphate; PFK1, phosphofructokinase-1; TKI, tyrosine kinase inhibitor; VEGFR, vascular endothelial growth factor receptor; EGFR, epidermal growth factor receptor; FGFR, fibroblast growth factor receptor; PDGFR, platelet-derived growth factor receptor; TGF-β1, transforming growth factor-beta 1; TV, tidal volume; Cdyn, dynamic compliance; RI, resistance; HYP, hydroxyproline; IHC, immunohistochemical; H&E, Hematoxylin and eosin; MLF, mouse lung fibroblasts; PPI, protein-protein interaction; MAPK, mitogen-activated protein kinase; ECAR, extracellular acidification rate; siRNA, small interfering RNA; DMSO, dimethylsulfoxide; PBS, phosphate buffered saline; DMEM, Dulbecco’s Modified Eagle Medium; FBS, fetal bovine serum; DAPI, 4′,6-diamidino-2-phenylindole.

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Summary

Keywords

pulmonary fibrosis, anlotinib, glycolysis, PFKFB3, PCBP3

Citation

Chen W, Zhang J, Zhong W, Liu Y, Lu Y, Zeng Z, Huang H, Wan X, Meng X, Zou F, Cai S and Dong H (2021) Anlotinib Inhibits PFKFB3-Driven Glycolysis in Myofibroblasts to Reverse Pulmonary Fibrosis. Front. Pharmacol. 12:744826. doi: 10.3389/fphar.2021.744826

Received

21 July 2021

Accepted

31 August 2021

Published

16 September 2021

Volume

12 - 2021

Edited by

Yang Zhou, Brown University, United States

Reviewed by

Parand Sorkhdni, Brown University, United States

Xinping Yue, Louisiana State University, United States

Updates

Copyright

*Correspondence: Hangming Dong, ; Shaoxi Cai,

†These authors have contributed equally to this work

This article was submitted to Respiratory Pharmacology, a section of the journal Frontiers in Pharmacology

Disclaimer

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

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