Abstract
Terrestrial ecosystems underwent extreme shifts in composition, following extensive degassing associated with the Siberian Traps near the Permian–Triassic boundary (PTB). These climatic perturbations are recorded in land plant macrofossil assemblages, which reflect complex changes in major biomes at the stage level. In this study, we quantitatively compare the major biomes reconstructed from the plant macrofossil assemblage data with those derived from coupled climate–vegetation simulations across the PTB. We focus on five stages across the PTB, from the Wuchiapingian to the Anisian. Our findings indicate that a shift from a cold climatic state to one with a mean surface temperature approximately C higher is consistent with observed changes over time in plant biomes, as documented in macrofossil records. In contrast, vegetation patterns during the Induan stage suggest strong variability, precluding a univocal attribution to a stable climate.
1 Introduction
The Permian–Triassic boundary (PTB) mass extinction occurred ca. 252 million years ago and was marked by the most severe biotic crisis in the Phanerozoic (; Stanley, 2016). Extreme reductions in both marine and terrestrial animals were recorded, most likely caused by extensive degassing associated with the Siberian Traps (; ; Sibik et al., 2015; ; Svensen et al., 2018; ; ). In the PTB aftermath, life on Earth had to drastically adjust to repeated changes in climate and the carbon cycle for several million years. This crisis in the faunal realm was coeval to complex shifts in composition in terrestrial ecosystems that were not limited to a single event (; ; Schneebeli-Hermann, 2020). Recent studies show that land plant macro- and microfossil (spores and pollen) records of the Early Triassic do not provide strong evidence for a sudden and catastrophic biodiversity loss coeval with the faunal diversity loss at the PTB (). Nonetheless, major changes in regional and global environmental conditions and flora composition occurred throughout the Early Triassic (; ; Schneebeli-Hermann, 2020; ; ). This includes the abrupt extirpation of the primary coal-forming carbon sinks, such as the Glossopteris biome of Gondwana (; Vajda et al., 2020; ) and the tropical gigantopterid forests of East Asia at the end of the Permian (). Shifts between a lycophyte-dominated (spore-producing vascular plants) and a gymnosperm-dominated (seed-producing plants, including conifers) vegetation coincided, respectively, with a succession of warm and cold climatic conditions (; Schneebeli-Hermann, 2020). Changes from gymnosperm- to lycophyte-dominated vegetation, as recorded in palynomorph assemblages from subtropical locations, occurred at the PTB and during the earliest Triassic Induan stage (at the Griesbachian–Dienerian substage boundary), whereas the shift from lycophyte- to gymnosperm-dominated vegetation occurred in the subsequent Olenekian stage (at the middle-late Smithian boundary), with transient regimes observed before and after this transition. Spores and pollen from higher latitudes record similar changes in relative abundance during the Early Triassic (; ).
The macrofossil assemblages described by were later used to reconstruct major biomes (), defined as areas with comparable, climatically controlled plant and animal assemblages (Ziegler, 1990; Walter, 2012). A reduction in biome diversity from the Permian to the Early Triassic was observed and was associated with a climate shift characterized by an increase in seasonality. This period of high variability was followed by a stable phase that lasted through the Middle Triassic, with comparable biomes from the Olenekian to the Ladinian. Microfossils were excluded from the reconstruction of the biome distribution as their source areas can be vast (regional) and not representative of the depositional site ().
The analysis provided by was performed with a temporal resolution at the stage level from the Wuchiapingian to the Ladinian. In the present paper, we will expand upon this analysis using climate simulations obtained by the offline coupling between a general circulation model (MITgcm) and a vegetation model (BIOME4). The climate simulations were performed using the paleogeographic configuration provided by PANALESIS (Vérard, 2019; Vérard, 2021) for the PTB, as described by . Interestingly, three alternative climatic steady states (denoted as cold, warm, and hot attractors) have been found for the same boundary conditions, with mean surface air temperatures (SATs) ranging from C to C, as shown in the bifurcation diagram in Figure 1 in terms of the atmospheric content. This diagram describes the dynamical backbone structure of the climate system (; ; ), showing the stable branches of the steady states, their extent, the position of tipping points, and possible hysteresis paths and tipping mechanisms to shift from one attractor to another ().
FIGURE 1
The presence of alternative attractors and the structure of the bifurcation diagram in Figure 1 suggest a potential explanation for shifts in composition observed in terrestrial ecosystems across the PTB as shifts between attractors. These transitions may have induced strong climatic variations in both atmospheric and oceanic circulations, impacting the whole climate system (
The aim of this paper is to assess whether the changes in global vegetation patterns, as recorded in land–plant macrofossil assemblages at the stage level and presented by
2 Methods
2.1 Paleogeographic reconstruction
The Permian–Triassic paleogeography is derived from PANALESIS (Vérard, 2019; Vérard, 2021), a global plate tectonic model providing maps every 10 Myr from 888 Ma (Tonian) to the present. The PANALESIS paleogeography for the PTB, which we use as a fixed boundary condition in our climate simulations, has proven to be in good agreement with geochemical and paleontological records (
2.2 Plant fossil records
The study by
The records are aggregated within a moving 100-km radius, where each genus is assigned a weight corresponding to the inverse of the number of major biome(s) it is associated with. For each aggregated assemblage, a vote for all possible biomes is then tallied based on the weights of all present genera. The final major biome is determined based on either i) the exclusive major biome if a characteristic representative is present, ii) the major biome whose combined weight is in the area, or iii) the major biome manually assigned by the authors considering taxa, location, and neighborhood (if the combined weight for each calculated biome is ). The resulting major biome distribution, thus, reflects the distribution of all plant macrofossil collections and corresponds to the area with comparable, climatically controlled plant and animal assemblages (
The classification of major biomes used in this study comprises six categories, which are mostly adapted from those in
2.3 Vegetation distribution along the stable branches
The simulated vegetation distribution is different between the three attractors but also varies along each stable branch, together with the atmospheric content. The range of vegetation pattern on each attractor is determined by applying the asynchronous coupling procedure between the MITgcm and BIOME 4 models, as described in Supplementary Appendix SA at various positions along the branches. This includes a common value of 320 ppm and, in general, at the edges of each branch (see Figure 1B). For the warm state, which has a narrow stable branch, only two positions are selected, at 320 ppm and near the upper edge of the branch (328 ppm). The two models, the climate model MITgcm (
The biomes resulting from the simulations (28 biomes; see
TABLE 1
| Number and name of biomes and major biomes | |
|---|---|
| Tropical everwet | |
| 1 | Tropical evergreen broadleaf forest |
| Tropical summerwet | |
| 2 | Tropical semi-evergreen broadleaf forest |
| 3 | Tropical deciduous broadleaf forest and woodland |
| 12 | Tropical savanna |
| 19 | Tropical forbland |
| Warm-to-cool temperate | |
| 4 | Temperate deciduous broadleaf forest |
| 5 | Temperate evergreen needleleaf forest |
| 6 | Warm-temperate evergreen broadleaf and mixed forest |
| 7 | Cool mixed forest |
| 8 | Cool evergreen needleleaf forest |
| 9 | Cool-temperate evergreen needleleaf and mixed forest |
| 15 | Temperate sclerophyll woodland and shrubland |
| 16 | Temperate broadleaved savanna |
| 17 | Temperate evergreen needleleaf open woodland |
| Cold temperate | |
| 10 | Cold evergreen needleleaf forest |
| 11 | Cold deciduous forest |
| 18 | Boreal parkland |
| 20 | Temperate forbland (case 1) |
| Desert | |
| 13 | Tropical xerophytic shrubland |
| 14 | Temperate xerophytic shrubland |
| 20 | Temperate forbland (case 2) |
| 21 | Desert |
| 27 | Barren (at latitudes 40) |
| Tundra and land ice | |
| 22 | Graminoid and forb tundra |
| 23 | Low and high shrub tundra |
| 24 | Erect dwarf-shrub tundra |
| 25 | Prostrate dwarf-shrub tundra |
| 26 | Cushion-forb tundra |
| 27 | Barren (at latitudes 40) |
| 28 | Land ice |
Correspondence between the 28 biomes represented in the BIOME 4 model and the major biomes adapted from
The present-day “grassland” is replaced by the herbaceous non-graminoid “forbland” because graminoids only appeared during the Cretaceous–Cenozoic (
The criteria for temperate forbland biome in BIOME 4 correspond to desert-like conditions, more than everwet or seasonally wet. However, our simulations show that this biome is mostly formed in high latitudes, (see for example gray areas in Figure 2). In polar regions, reduced evaporation gives rise to cold temperate vegetation, allowing it to thrive instead of forming deserts. For that reason, temperate forbland is classified as a cold temperate major biome (case 1 in Table 1). For completeness, we repeat the same analysis with an alternative interpretation, whereby temperate forbland is classified as a desert (case 2 in Table 1) in Section 3.4.
FIGURE 2

Comparison of plant fossil assemblages of Wuchiapingian age (259.51–254.14 Ma) superposed with major biomes modeled at 320 ppm for the (A) hot state and (B) cold state.
2.4 Similarity between geological records and modeled biomes
The paleontological record provides local information on vegetation, while the model simulates broader areas, posing a challenge for the direct comparison between the two. Visual comparisons (see example in Figure 2) can offer valuable insights into how well the simulation aligns with the records; however, this approach is not quantitative and does not always provide a clear answer.
Each plant fossil assemblage record is assigned to the model-grid cell corresponding to its location. Although the single outcrops are considered independent, their spatial resolution is sometimes higher than that of the model [i.e., records fall within the same grid cell of (300 km)2]. Because typical statistical fluctuations decrease with the square root of the number of observations, each distance is weighted based on the number of similar individual records in the same cell (see Equation 2). This results in the merging of plant fossil assemblages, representing the same biome within the same cell, thereby increasing their confidence. The merging contributes to a reduction in sample sizes : from 97 to 56 (Wuchiapingian), 59 to 43 (Changhsingian), 66 to 46 (Induan), 88 to 42 (Olenekian), and 202 to 64 (Anisian). Note that the weight is applied only for the mean distance calculation, whereas for the median, only one record is considered among the identical ones within the same grid cell (see Section 2.5).
The similarity between the plant macrofossil record at a given stage and the simulated vegetation distribution of an attractor is estimated as follows. For each reported assemblage of fossil plants, we compute the smallest geodesic distance to the nearest region where the same major biome has been predicted by the simulation, given bywhere km is the Earth radius, is the latitude, is the longitude, and indices refer to the position of the fossil record and the nearest point on the map where the considered major biome is simulated . Figure 3 shows an example with a simulation and few paleobotanical records, where arrows correspond to the distance between the record and the nearest cell with the same major biome. We have checked that if the model predicts the same major biome at the position where it has been observed, then the distance is 0 (see the two records without arrow in Figure 3). When a major biome present in the fossil record does not appear in a simulation, the distance is arbitrarily set to the longest possible distance, i.e., the distance between the two poles, m.
FIGURE 3

Example of the calculation of the smallest geodesic distance between geological records (circles with black contours) and the nearest region where the same major biome has been predicted by the simulation.
We define the weighted mean distance of the ensemble as follows:where is given by Equation 1 for each observation i, n is the sample size, is the number of co-located identical records, and is the weight applied to each point. The associated variance V is as follows:
2.5 Statistical tests
The distances are calculated for each combination of fossil records (for each stage) and simulation (for each attractor and value), together forming a sample. For a given stage, eight samples corresponding to the eight simulations are available. The one minimizing the mean distance (or median distance) is assumed to better represent the vegetation distribution recorded at that stage. The difference between this sample and the others can either be due to i) a real difference between the populations from which the samples are drawn or ii) sampling fluctuations, meaning that geological records do not permit discrimination between the two simulations. In the first case, the simulation minimizing is significantly better at reproducing the recorded vegetation, while in the second case, the data do not allow for the clear determination of which attractor minimizes the distance. To distinguish between these two cases, statistical tests are employed. These tests determine whether the difference between two samples, and , is significant.
The utilization of several methods (on means and medians), together with the classification of the temperate forbland biome into two different major biomes (cases 1 and 2 in Table 1), allows us to test the robustness of the results (see also Supplementary Appendix SB).
2.5.1 Testing difference between means: -test
We assume that the distributions of follow a normal distribution with mean and variance (given, respectively, in Equations 2, 3) and that our sample is sufficiently large to approximate the variance of the population distribution by the variance of the sample distribution . The deviation from the null hypothesis (i.e., two combinations of a set of fossil records with a simulation, and , have the same mean: ) can be tested using (
2.5.2 Testing difference between medians: Mood-test
The -test on means is based on the hypothesis that the populations follow a normal distribution. An alternative is the Mood-test for medians, a method without any assumption about the shape of the distribution, the only requirement being that the two populations have the same shape (
The Mood-test is applied to determine whether the difference in the median value of the distances for two attractors is significant, the null hypothesis being . This test consists of 1) the determination of the ‘grand median’ of the two reunited samples, 2) the construction of the contingency table to count the number of distances above and below the grand median in each sample, and 3) testing the independence of the two categories through a test. The test is performed using median_test from the scipy-stats Python library.
A 5% threshold is used, as for the -test, to reject the null hypothesis. However, for two identical samples, the probability is since the Mood-test is bilateral.
3 Results
3.1 Simulation maps
The simulated distribution of the major biomes corresponding to the attractors at various atmospheric contents is shown in Figure 4. Tundra, barren, and land ice biomes, which have no correspondence in the macrofossil assemblages, are mostly present in polar regions in the cold and warm states, especially at the northern polar latitudes coinciding with the sea ice extent (
FIGURE 4

Distribution of the major biomes (see Table 1) for (A–C) hot, (D, E) warm, and (F–H) cold states, with the atmospheric content varying, as indicated next to the labels. The white area corresponds to ocean.
The simulated major biomes in the cold and warm states (Figures 4D–H) are both dominated by desert at tropical and subtropical latitudes. Along 60 latitude, a band of warm-to-cool temperate vegetation is present, whereas in polar regions, cold temperate plants are favored and switch into tundra when moving poleward. The space occupied by the tundra in the northern polar region reduces in favor of cold temperate as the atmospheric content increases along the stable branch. The changes in atmospheric content mainly affect the biomes in the high latitudes of the northern hemisphere in both attractors. In the southern polar region, the vegetation is largely dominated by temperate forbland (i.e., either cold temperate or desert major biomes, as discussed in Section 2.3).
In the hot state, the warm-to-cool temperate major biome is also present but shifted poleward compared to the other attractors, so it dominates in the northern polar region. The southern polar region is occupied by both the warm-to-cool temperate major biome and temperate forbland, with the extent of the latter reducing as the atmospheric content increases (see Figures 4A–C). At tropical and subtropical latitudes, desert areas are generally present, and plants adapted to tropical summerwet and everwet environments are well-distributed along the tropics and 50 latitude, respectively. Their extent increases together with the atmospheric content along the hot-state branch. In general, the increase in atmospheric content favors warmer and wetter major biomes: tropical everwet/summerwet over desert in mid-latitudes/tropical regions and warm-to-cool temperate over temperate forbland in the southern polar region.
3.2 Test on the mean values
Figure 5 shows, at the five considered stages, the mean distance and associated standard error (green circles and bars, respectively) for each simulation, along with the -value. See also Supplementary Table S1.
FIGURE 5

Weighted-mean and standard deviation of the distances computed between each of the eight simulations and geological records for the five stages. For each stage, the yellow area indicates the simulation minimizing the mean distance. The numbers on the right correspond to the -values [%] of the difference between each distribution and the one highlighted in yellow (Equation 5), rounded to a percent. When rounding with 0 digits leads to 0%, the notation is used instead. Gray areas indicate statistically significant differences. In this figure, temperate forbland is included in the cold temperate major biome (case 1).
For the two oldest stages, the Wuchiapingian and the Changhsingian (Lopingian), the vegetation distribution modeled for the cold state at 320 ppm provides the best match with the fossil records. However, it is not significantly different from the vegetation distribution modeled at other positions on the cold branch or from the warm state. In contrast, the vegetation simulated in the hot state is significantly different, and thus, it is not a good candidate to reproduce the records of these stages.
In the case of the Induan, the hot state at 308 ppm minimizes but is not statistically different from any of the other simulated conditions, except for the upper branch of the hot state, which can be excluded. For both the Olenekian and Anisian, the lower part of the hot-state branch, i.e., at 308 ppm and 320 ppm, significantly differs from all the other conditions and better matches the records.
These results suggest a transition from the cold or warm state in the Lopingian to the hot state in the Olenekian, in concordance with the global warming recorded from the Lopingian to the Early Triassic (
3.3 Test on the median values
The test on medians shows a trend comparable to what is observed for that on means, as shown in Figure 6; Supplementary Table S2. For both the Wuchiapingian and the Changhsingian, the cold state, not statistically different along the branch or from the warm state, has a smaller median and thus matches better with the data, while the hot state has a significantly larger median and thus can be excluded.
FIGURE 6

Whisker plot of the distances computed between each of the eight simulations and geological records for the five stages. For each stage, the yellow area indicates the simulation minimizing the median distance. The numbers on the right correspond to the -values [%] of the difference between each distribution and the one highlighted in yellow. When rounding with 0 digits leads to 100% (resp. 0%), the notation (resp. ) is used instead. Gray areas indicate statistically significant differences. In this figure, temperate forbland biome is included in the cold temperate major biome (case 1).
For the Induan, the median in the warm-state simulation with 328 ppm is lower than that for the other simulations and is statistically different from the whole hot state and the lower edge of the cold-state branch.
For the Olenekian and the Anisian, the hot state at 350 ppm minimizes the median but is not significantly different from the same attractor with other atmospheric content of . For the Olenekian, the difference with the warm state at 328 ppm is also non-significant. However, in both cases, the hot state differs from the cold state, which can thus be excluded.
3.4 Robustness of the results against the classification of the temperate forbland biome
The classification of temperate forbland into cold temperate is questionable, as discussed in Section 2.3. In this study, we test the robustness of the results against the classification of this biome by including it in the desert major biome (case 2) instead of cold temperate (case 1).
3.4.1 Case 2: test on the mean values
The statistical analysis of the mean values is shown in Figure 7; Supplementary Table S3. The Wuchiapingian, Changhsingian, and Induan stages show better alignment between the geological records and cold and warm attractors. This tendency was already observed in the Lopingian, with the earlier classification of temperate forbland in the cold temperate major biome (case 1). However, the Induan did not display a clear tendency in favor of the hot or cold state in the previous analysis.
FIGURE 7

Same as Figure 5, except that the temperate forbland biome is included in the desert major biome (case 2).
In contrast, the results for both the Olenekian and Anisian stages do not differentiate the hot from the cold state. Although the minimal is observed for the cold-state simulations in both cases, the hot state is not significantly different. For the Olenekian, the cold states with 320 ppm and 332 ppm and the entire hot-state branch cannot be excluded. For the Anisian, the upper cold-state branch and the hot state at 350 ppm match the data comparably well.
Therefore, in the mean test, this alternative classification (case 2) is less effective in distinguishing between the attractors compared to the previous option (case 1).
3.4.2 Case 2: test on the median values
The -values for the test on the medians are reported in Figure 8 and detailed in Supplementary Table S4. As for the case with temperate forbland included in the cold temperate major biome, the statistical test shows a better matching of the cold and warm states in both the Wuchiapingian and Changhsingian. In this case, the same holds true for the Induan, where the cold state with 304 ppm is also significantly different from the other cold states.
FIGURE 8

Same as Figure 6, except that the temperate forbland biome is included in the desert major biome (case 2).
For the Olenekian, the hot state with 350 ppm minimizes the median and is comparable to the other positions along the branch. In comparison with the case where temperate forbland is included in the cold temperate major biome, the hot state is favored here over the warm state at 328 ppm. For the Anisian, hot states at 320 ppm and 350 ppm match the vegetation pattern and are significantly different from the other simulations.
4 Summary and conclusion
The increasing temperatures observed between the Lopingian and Middle Triassic (
The classification of the temperate forbland biome from the BIOME 4 vegetation model is ambiguous; therefore, two cases have been tested by including it either in cold temperate or desert major biomes. Its classification does not change the results for the Lopingian but has a larger impact on the Early Triassic, for which the presence of the cold temperate major biome in hot-state simulations is fully dependent on the assignment of the temperate forbland biome. The outlier values resulting from the absence of the cold temperate major biome in the hot-state simulations highly impact the mean values. However, the median is less sensitive to the outliers and, thus, to the classification of a particular biome, making the test on median values more robust and conclusive than the test on mean values.
The overall results are summarized in Figure 9 and show that the Lopingian matches well with both the cold and warm states in all tests. The early Middle Triassic (Anisian) is marked by the stabilization of the climate, as reported by C isotope ratios (
FIGURE 9

For each stage, the simulations that cannot be excluded from the data are highlighted in blue. The four statistical tests performed are shown from left to right (darker to lighter blue): test on mean and median values for temperate forbland included in the cold temperate major biome (case 1) and test on mean and median values for temperate forbland included in the desert major biome (case 2).
During the Induan, three tests out of four are in favor of a cold or warm state, whereas the remaining one is not conclusive (see Figure 9). Isotope ratios of and recorded oscillations during both the Induan and Olenekian, at shorter timescales than the age resolution considered in this study (
The warm state has a narrow, stable branch and cannot be reached through bifurcation-induced tipping from the other attractors (
In general, the results presented in this study on changes in the vegetation distribution over time suggest a transition from the cold attractor in the Lopingian to the hot attractor in the latest Early Triassic and early Middle Triassic, with a transient phase in the earliest Triassic (Induan) (see Figure 10). This study provides the most direct comparison to date between the Permian–Triassic plant fossil assemblages and climate simulations. The possibility of discriminating between attractors at the stage level highlights the relevance of using the multistability framework to describe the climatic variations recorded around the Permian–Triassic boundary.
FIGURE 10

Summary of the comparison between the vegetation distribution associated with macrofossil records from the late Permian to the Early Triassic (
Statements
Data availability statement
The original contributions presented in the study are included in the article/Supplementary Material; further inquiries can be directed to the corresponding author.
Author contributions
CR: methodology, writing–original draft, writing–review and editing, formal analysis, and visualization. CV: supervision, validation, and writing–review and editing. JK: supervision, validation, writing–review and editing, and methodology. HN: validation and writing–review and editing. EK: validation and writing–review and editing. MB: validation, writing–review and editing, conceptualization, funding acquisition, methodology, supervision, and writing–original draft.
Funding
The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. We acknowledge the financial support from the Swiss National Science Foundation (Sinergia Project No. CRSII5_180253).
Acknowledgments
The authors thank all the Sinergia project members (PaleoC4, https://www.unige.ch/paleoc4/) and Emmanuel Castella for useful discussions. The simulations were performed on the Baobab and Yggdrasil clusters at the University of Geneva.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Generative AI statement
The author(s) declare that no Generative AI was used in the creation of this manuscript.
Publisher’s note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/feart.2025.1520846/full#supplementary-material
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Summary
Keywords
Permian–Triassic, paleobiogeography, plant fossils, modeling, tipping, climatic shift
Citation
Ragon C, Vérard C, Kasparian J, Nowak H, Kustatscher E and Brunetti M (2025) Comparison between plant fossil assemblages and simulated biomes across the Permian-Triassic Boundary. Front. Earth Sci. 13:1520846. doi: 10.3389/feart.2025.1520846
Received
31 October 2024
Accepted
07 January 2025
Published
11 March 2025
Volume
13 - 2025
Edited by
Folco Giomi, University of Rome Tor Vergata, Italy
Reviewed by
Deborah Woodcock, Clark University, United States
Jessie George, Natural History Museum of Los Angeles County, United States
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© 2025 Ragon, Vérard, Kasparian, Nowak, Kustatscher and Brunetti.
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*Correspondence: Maura Brunetti, maura.brunetti@unige.ch
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