Frontiers in Microbiology

Original Research

Published on 22 Sep 2025

Metagenomic evidence clarifies the texture-dependent cascading effects of organic degradation on soil hypoxia and N2O emission

in Terrestrial Microbiology

Jialin Hu
K. Taylor Cyle
Wenqiao Yuan
Wei Shi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1670657

2,665 views
1 citation

Review

Published on 22 Sep 2025

Microbial-mediated induced resistance: interactive effects for improving crop health

in Microbe and Virus Interactions with Plants

Ashwini M. Charpe
Balaji Aglave
Dilip K. Ghosh

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1660944

2,962 views
3 citations

Original Research

Published on 22 Sep 2025

Wastewater-based surveillance for severe acute respiratory syndrome coronavirus 2 variants in Gwangju, Republic of Korea

in Virology

Chaeyoung Lee
Jungwook Park
Jin Sun No
Jongpil Kim
Jungmi Seo
Dongju Kim
Il-Hwan Kim
Eun-Jin Kim

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1676742

2,327 views
1 citation

Original Research

Published on 22 Sep 2025

Associations between relative abundances of Bifidobacterium species in the gut and DNA methylation of cortisol-related genes in a pediatric population

in Microbial Symbioses

Samantha A. Harker
Kevin S. Bonham
Shelley Hoeft McCann
Alexandra R. Volpe
Qiyun Zhu
Viren D’Sa
Daphne Koinis-Mitchell
Sean C. L. Deoni
Vanja Klepac-Ceraj
Candace R. Lewis

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1558809

2,466 views
1 citation

Original Research

Published on 22 Sep 2025

The six-year decomposition of coarse woody debris drives shifts in soil fungal communities in subtropical forests

in Terrestrial Microbiology

Nan Wang
Binle Ding
Ruyi Zhang
Hui Chen
Tingsi Xie
Shangbin Bai
Hua Chen
Xiaocheng Pan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1544163

3,204 views
1 citation

Original Research

Published on 22 Sep 2025

Influence of the gut microbiota on the pharmacokinetics of tacrolimus in liver transplant recipients: insights from microbiome analysis

in Microorganisms in Vertebrate Digestive Systems

Yan Wang
Zhongyuan Bai
Yufeng Liu
Yan Wang
Jun Xu
Zhiyong Lai

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1616985

2,414 views

Editorial

Published on 22 Sep 2025

Editorial: Effects of microplastics on soil ecosystems

in Terrestrial Microbiology

Junqiang Zheng
Periasamy Dhevagi
Sesan Abiodun Aransiola
Shahid Iqbal
Yuzhe Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1686836

3,458 views

Editorial

Published on 22 Sep 2025

Editorial: Industrial application of extreme microbes: harnessing the power of nature's extremophiles

in Extreme Microbiology

Sahib Zada
Muhammad Rafiq
Wasim Sajjad

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1697504

4,672 views

Original Research

Published on 22 Sep 2025

Two new non-chlorophyll f-producing species in the Kovacikia genus (Leptolyngbyaceae, Leptolyngbyales) from the Poyang Lake Basin, China

in Terrestrial Microbiology

Li-Qin Shen
Guofei Dai
Ying Le
Sheng Lai
Xinyuan Liu
Renhui Li
Jutao Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1578689

1,933 views

Original Research

Published on 22 Sep 2025

Desertification gradients shape Medicago sativa rhizosphere microbiomes in inner Mongolia’s agro-pastoral ecotone

in Microbial Symbioses

Jiajia Xu
Senyuan Wang
Zhenyu Jia
Zhaoming Wang
Yuying Bao
Jie Wei

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1651717

1,806 views

Review

Published on 19 Sep 2025

Harnessing beneficial bacteria to remediate antibiotic-polluted agricultural soils: integrating source diversity, bioavailability modulators, and ecological impacts

in Terrestrial Microbiology

Oluwaseyi Samuel Olanrewaju
Cornelius Carlos Bezuidenhout

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1635233

4,106 views

Original Research

Published on 19 Sep 2025

Anaerobic gut fungi as biocatalysts: metabolic and physiological analysis of anaerobic gut fungi under diverse cultivation conditions

in Microbial Physiology and Metabolism

Kevin Edward Schulz
Dominik Scholz
Anto Rafael Sikirić
Daniela Rambow
Anke Neumann
Katrin Ochsenreither

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1662047

4,026 views

Original Research

Published on 19 Sep 2025

Geographic variation in fungal diversity associated with leaf spot symptoms of Coffea arabica in Yunnan, China

in Microbe and Virus Interactions with Plants

Xingfei Fu
Haohao Yu
Yaqi Li
Guiping Li
Xiaofei Bi
Yanan Li
Faguang Hu
Wenjiang Dong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1568029

3,522 views
1 citation

Original Research

Published on 19 Sep 2025

Taxonomic and functional profiling of the vulvar microbiome indicates variations related to ecological signatures, aging, and health status

in Systems Microbiology

Arnout Mieremet
Michelle van der Wurff
Lisa Pagan
Edgar Ferrer-González
Jin Seo
Frank H. J. Schuren

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1633147

4,616 views

Original Research

Published on 19 Sep 2025

Enhancing pathogen identification through AI-assisted metagenomic sequencing

in Systems Microbiology

Xiayu Peng
Yong Wei
Xue Zhou

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1634194

3,910 views
1 citation

Original Research

Published on 19 Sep 2025

Soil viruses drive carbon turnover during subtropical secondary forest succession

in Microbe and Virus Interactions with Plants

Xingyi Chen
Danting Yu
Yuting Yan
Chengyu Yuan
Jizheng He

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1633379

2,777 views
1 citation

Original Research

Published on 19 Sep 2025

Growth, physiology, and metabolism of Halomonas meridiana in aqueous ammonium sulfate with implications for icy moon astrobiology

in Extreme Microbiology

Cassie M. Hopton
Peter Nienow
Charles S. Cockell

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1642998

4,500 views

Review

Published on 19 Sep 2025

Harnessing beneficial soil bacteria to promote sustainable agriculture and food security: a one health perspective

in Terrestrial Microbiology

Carlos Sabater
Madalina Neacsu
Sylvia H. Duncan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1638553

5,246 views
2 citations

Opinion

Published on 19 Sep 2025

Issues on microbial soil remediation: a case of Cd detoxification by Bacillus strains for alleviating heavy metal stress in crop plants

in Microbiotechnology

Yini Shi
Xianyang Feng
Zhongke Sun
Boyuan Zhang
Chengwei Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1665354

2,929 views
1 citation

Original Research

Published on 19 Sep 2025

Sitagliptin ameliorates microbial dysbiosis and enhances gut barrier integrity in streptozotocin-induced type 2 diabetic rats

in Microorganisms in Vertebrate Digestive Systems

Ying Chang
Yuanjiang Zhou
Fanlin Zhou
Jie Liang
Yu Li
Mingyuan Tian

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1655522

3,078 views
1 citation

Original Research

Published on 19 Sep 2025

The influence of particle activated carbon on heavy metal passivation and antibiotic degradation in various organic fertilizers

in Microbiological Chemistry and Geomicrobiology

Zifang Chi
Yuru Li
Huai Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1686052

3,662 views

Original Research

Published on 19 Sep 2025

Detection of ESBL-producing Escherichia coli carrying blaCTXM-15 in magnificent frigatebird (Fregata magnificens) from Brazil: a one health perspective

in Antimicrobials, Resistance and Chemotherapy

Bruno Rocha Pribul
Letícia da Silva Nascimento
Carlos Eduardo Gaspar Marinato
Melise Chaves Silveira
Daiana Cristina Silva Rodrigues
Bruna Ribeiro Sued-Karam
Daniel Miceli Serwy
Maria Ogrzewalska
Marina Galvão Bueno
Ana Paula D’Alincourt Carvalho-Assef

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1671302

2,627 views

Original Research

Published on 19 Sep 2025

Apoptosis and autophagy promote Babesia microti infection in tick midguts: insights from transcriptomic and functional RNAi studies

in Infectious Agents and Disease

Songqin Chen
Shanming Hu
Fengjun Gong
Haotian Zhu
Yongzhi Zhou
Jie Cao
Houshuang Zhang
Yanan Wang
Jinlin Zhou

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1632974

2,854 views

Review

Published on 19 Sep 2025

Amoxicillin or tetracycline in bismuth-containing quadruple therapy for Helicobacter pylori eradication: a systematic review and meta-analysis

in Antimicrobials, Resistance and Chemotherapy

Kunping Ju
Qingzhou Kong
Shanling Zhang
Liangrun Zhu
Yueyue Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1667516

5,622 views
1 citation

39,409 articles

articles

Metagenomic evidence clarifies the texture-dependent cascading effects of organic degradation on soil hypoxia and N2O emission

Microbial-mediated induced resistance: interactive effects for improving crop health

Wastewater-based surveillance for severe acute respiratory syndrome coronavirus 2 variants in Gwangju, Republic of Korea

Associations between relative abundances of Bifidobacterium species in the gut and DNA methylation of cortisol-related genes in a pediatric population

The six-year decomposition of coarse woody debris drives shifts in soil fungal communities in subtropical forests

Influence of the gut microbiota on the pharmacokinetics of tacrolimus in liver transplant recipients: insights from microbiome analysis

Editorial: Effects of microplastics on soil ecosystems

Editorial: Industrial application of extreme microbes: harnessing the power of nature's extremophiles

Two new non-chlorophyll f-producing species in the Kovacikia genus (Leptolyngbyaceae, Leptolyngbyales) from the Poyang Lake Basin, China

Desertification gradients shape Medicago sativa rhizosphere microbiomes in inner Mongolia’s agro-pastoral ecotone

Harnessing beneficial bacteria to remediate antibiotic-polluted agricultural soils: integrating source diversity, bioavailability modulators, and ecological impacts

Anaerobic gut fungi as biocatalysts: metabolic and physiological analysis of anaerobic gut fungi under diverse cultivation conditions

Geographic variation in fungal diversity associated with leaf spot symptoms of Coffea arabica in Yunnan, China

Taxonomic and functional profiling of the vulvar microbiome indicates variations related to ecological signatures, aging, and health status

Enhancing pathogen identification through AI-assisted metagenomic sequencing

Soil viruses drive carbon turnover during subtropical secondary forest succession

Growth, physiology, and metabolism of Halomonas meridiana in aqueous ammonium sulfate with implications for icy moon astrobiology

Harnessing beneficial soil bacteria to promote sustainable agriculture and food security: a one health perspective

Issues on microbial soil remediation: a case of Cd detoxification by Bacillus strains for alleviating heavy metal stress in crop plants

Sitagliptin ameliorates microbial dysbiosis and enhances gut barrier integrity in streptozotocin-induced type 2 diabetic rats

The influence of particle activated carbon on heavy metal passivation and antibiotic degradation in various organic fertilizers

Detection of ESBL-producing Escherichia coli carrying blaCTXM-15 in magnificent frigatebird (Fregata magnificens) from Brazil: a one health perspective

Apoptosis and autophagy promote Babesia microti infection in tick midguts: insights from transcriptomic and functional RNAi studies

Amoxicillin or tetracycline in bismuth-containing quadruple therapy for Helicobacter pylori eradication: a systematic review and meta-analysis