Infectious disease control in the microbial functional genomics era

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ORIGINAL RESEARCH

Accepted on 22 Jul 2025

Phylogenomic analysis of OXA-23-positive and genetic context view of rare NDM-1-producing carbapenem-resistant Acinetobacter baumannii isolates in one teaching hospital in China

Su Dong
Jianjiang Lou
Caiping Mao
Yuejuan Fang
Huan Zhang

doi 10.3389/fmicb.2025.1575257

ORIGINAL RESEARCH

Accepted on 04 Jul 2025

Genomic profiling of cefotaxime-resistant Haemophilus influenzae from Norway and Sweden reveals extensive expansion of virulent multidrug-resistant international clones

Dagfinn Skaare
Inger Lill Anthonisen
Nermin Zecic
Andrew Jenkins
Dominique A. Caugant
Trond Egil Ranheim
Arnfinn Sundsfjord
Kristin Hegstad

doi 10.3389/fmicb.2025.1601390

616 views

ORIGINAL RESEARCH

Published on 19 Jun 2025

Impact of sample multiplexing on detection of bacteria and antimicrobial resistance genes in pig microbiomes using long-read sequencing

Mirena Ivanova
Frank M. Aarestrup
Saria Otani

doi 10.3389/fmicb.2025.1597804

1,395 views

ORIGINAL RESEARCH

Published on 13 Jun 2025

Methicillin-resistant Staphylococcus aureus in Saudi Arabia: genomic evidence of recent clonal expansion and plasmid-driven resistance dissemination

Ahmed Yousef Alhejaili
Ge Zhou
Heba Halawa
Jiayi Huang
Omniya Fallatah
Raneem Hirayban
Sara Iftikhar
Abrar AlAsmari
Mathew Milner
16 more
Waleed Al Salem

doi 10.3389/fmicb.2025.1602985

1,901 views

ORIGINAL RESEARCH

Published on 06 Jun 2025

The diverse virulence potential of atypical enteropathogenic Escherichia coli isolated from diarrhea: the emergence of a hybrid pathotype?

Ana C. M. Santos
Roberta S. Silva
Mônica A. M. Vieira
Cristina V. Niero
Matheus S. F. Ribeiro
Beatriz E. C. Guth
Tânia A. T. Gomes
Rosa M. Silva

doi 10.3389/fmicb.2025.1599350

1,509 views

ORIGINAL RESEARCH

Published on 15 May 2025

The wzc mutation mediates virulence changes in K1-type Klebsiella pneumoniae within the same patient

Gaoqin Teng
Qiuying Qin
Shuo Ding
Yanchao Wu
Yingying Fu
Meng Zhang
Xiaoqiang Yang
Ye Jin
Zhijiang Xu
Man Huang

doi 10.3389/fmicb.2025.1577629

1,631 views

ORIGINAL RESEARCH

Published on 07 May 2025

Whole genome sequencing reveals virulence–mobile element linkages and phylogenetic diversity in multidrug-resistant Escherichia coli from Nigeria

Nubwa Medugu
Mabel Kamweli Aworh
Kenneth Iregbu
Philip Nwajiobi-Princewill
Dawn M. Hull
Lyndy Harden
Pallavi Singh
Stephen Obaro
Abiodun Egwuenu
5 more
Siddhartha Thakur

doi 10.3389/fmicb.2025.1579175

2,086 views

ORIGINAL RESEARCH

Published on 01 May 2025

Application of metagenomic next-generation sequencing in pathogen detection of lung infections

Song Chen
Tanglin Ouyang
Kaiyang Wang
Xuan Hou
Rong Zhang
Meiyong Li
Haibin Zhang
Qinghua He
Xiuzhen Li
2 more
Bo Huang

doi 10.3389/fcimb.2025.1513603

1,387 views

ORIGINAL RESEARCH

Published on 16 Apr 2025

The application prospect of metagenomic next-generation sequencing technology in diagnosing suspected lower respiratory tract infections

Wei Li
Mingming Zhao
Weiwei Wu
Gang Chen
Yanping Hang
Haixia Zheng
Zhenyun Gao
Jia Liu
Yuguo Zhao

doi 10.3389/fcimb.2025.1494638

1,186 views

ORIGINAL RESEARCH

Published on 01 Apr 2025

Identifying phage Lysins through genomic analysis of prophages from Acinetobacter baumannii

Maria Leonor Raposo
Ana Carolina Pimentel
Vera Manageiro
Aida Duarte
Manuela Caniça
Filipa F. Vale

doi 10.3389/fmicb.2025.1532950

1,511 views
1 citation

ORIGINAL RESEARCH

Published on 05 Mar 2025

HPV integration profiling using nanopore sequencing and association with cervical precancerous lesion

Ying Hou
Shoufeng Ni
Xin Liu
Xingyu Liu
Nan Wang
Fuqiang Xu
Jianyong Gao
Yanmei Li
Yuxiang Zhou
5 more
Qing Liu

doi 10.3389/fmicb.2025.1522550

1,379 views

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Systems Microbiology
Antimicrobials, Resistance and Chemotherapy
Infectious Agents and Disease

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Articles

Phylogenomic analysis of OXA-23-positive and genetic context view of rare NDM-1-producing carbapenem-resistant Acinetobacter baumannii isolates in one teaching hospital in China

Genomic profiling of cefotaxime-resistant Haemophilus influenzae from Norway and Sweden reveals extensive expansion of virulent multidrug-resistant international clones

Impact of sample multiplexing on detection of bacteria and antimicrobial resistance genes in pig microbiomes using long-read sequencing

Methicillin-resistant Staphylococcus aureus in Saudi Arabia: genomic evidence of recent clonal expansion and plasmid-driven resistance dissemination

The diverse virulence potential of atypical enteropathogenic Escherichia coli isolated from diarrhea: the emergence of a hybrid pathotype?

The wzc mutation mediates virulence changes in K1-type Klebsiella pneumoniae within the same patient

Whole genome sequencing reveals virulence–mobile element linkages and phylogenetic diversity in multidrug-resistant Escherichia coli from Nigeria

Application of metagenomic next-generation sequencing in pathogen detection of lung infections

The application prospect of metagenomic next-generation sequencing technology in diagnosing suspected lower respiratory tract infections

Identifying phage Lysins through genomic analysis of prophages from Acinetobacter baumannii

HPV integration profiling using nanopore sequencing and association with cervical precancerous lesion

Frontiers in Microbiology

Systems Microbiology

Antimicrobials, Resistance and Chemotherapy

Infectious Agents and Disease