Frontiers in Microbiology | Microorganisms in Vertebrate Digestive Systems

Editorial

Published on 10 Oct 2025

Editorial: Fecal Microbiota Transplants: challenges in translating microbiome research to clinical applications

in Microorganisms in Vertebrate Digestive Systems

Emidio Scarpellini
Ludovico Abenavoli
Tetyana Falalyeyeva
Nazarii Kobyliak
Ghizlane Bendriss

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1704947

2,717 views
1 citation

Original Research

Published on 10 Oct 2025

Gut microbiota and metabolite profiles in HBV cirrhosis with persistent liver enzyme abnormalities

in Microorganisms in Vertebrate Digestive Systems

Huan He
Ruixue Zou
Xinyi Liao
Yinghua Lan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1645023

2,315 views

Review

Published on 10 Oct 2025

The gut-kidney axis in urolithiasis: roles of gut microbiota, metabolites, and therapeutic implications

in Microorganisms in Vertebrate Digestive Systems

Dong Li
Zehong Li
Wei Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1655808

3,152 views
2 citations

Review

Published on 10 Oct 2025

Microbial beginnings: determinants and disruptions of the neonatal microbiome

in Microorganisms in Vertebrate Digestive Systems

Jhommara Bautista
Andrés López-Cortés

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1672780

3,663 views
5 citations

Review

Published on 09 Oct 2025

Gut mycobiome in cardiometabolic disease progression: current evidence and future directions

in Microorganisms in Vertebrate Digestive Systems

Xiaoyu Wei
Zixin Guo
Jingyang Wang
Dan Gao
Qiang Xu
Shengyu Hua

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1659654

2,807 views
2 citations

Review

Published on 08 Oct 2025

The role of exercise-induced short-chain fatty acids in the gut–muscle axis: implications for sarcopenia prevention and therapy

in Microorganisms in Vertebrate Digestive Systems

Junyi Fang
Weiyi Yan
Xuao Sun
Jun Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1665551

4,889 views
4 citations

Original Research

Published on 07 Oct 2025

Chinese herbal medicine promotes growth by improving nutrient utilization and rumen microbiota in suckling lambs

in Microorganisms in Vertebrate Digestive Systems

Yan Wang
Yinglian Wu
Rongyan Qin
Xiangyu Chen
Limeng Liu
Lele Wang
Wenqi Wang
Yanfeng Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1644331

2,082 views

Original Research

Published on 06 Oct 2025

Differences in gut microbiota among patients with anastomotic leak following colorectal cancer surgery

in Microorganisms in Vertebrate Digestive Systems

Junfeng Yan
Qiushuang Wang
Qiang Li
Jiatong Lu
Qiang Tong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1578990

2,380 views

Original Research

Published on 06 Oct 2025

Assessing the impact of non-protein nitrogen or rumen undegradable protein supplementation on rumen bacterial diversity and ruminal fermentation in grazing steers during the dry season

in Microorganisms in Vertebrate Digestive Systems

Ana Veronica Lino Dias
Yury Tatiana Granja-Salcedo
Juliana Duarte Messana
Karine Dalla Vecchia Camargo
Kênia Larissa Gomes Carvalho Alves
Elisabeth Victória Alves Machado
Milena Tavares Lima Constancio
Ricardo Andrade Reis
Telma Teresinha Berchielli

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1670636

1,868 views

Original Research

Published on 03 Oct 2025

Dietary low levels of Eucommia ulmoides leaf extracts: effects on antioxidant capacity, immunity, and cecal microbiota in lipopolysaccharide-challenged broilers

in Microorganisms in Vertebrate Digestive Systems

Jinliang Zhang
Lei Chai
Yan Guo
Jincheng Han
Guangli Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1662502

1,898 views

Original Research

Published on 03 Oct 2025

Effects of dietary supplementation with hydroponic wheat seedlings on rumen fermentation, meat quality, amino acid and fatty acid contents, and rumen bacterial diversity in sheep

in Microorganisms in Vertebrate Digestive Systems

Yong Tuo
Jinlong Li
Guzalnur Amat
Zhiqiang Cheng
Liangzhong Hou
Changjiang Zang
Tongjun Guo

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1657777

2,610 views

Original Research

Published on 03 Oct 2025

Gut viral metagenomics identifies viral signatures and their role in depression

in Microorganisms in Vertebrate Digestive Systems

Xinyu Chen
Jun Wu
Dahua Fan
Peiwen Zhang
Yan Li
Yongkai Cao
Meiqun Cao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1573851

2,195 views
1 citation

Review

Published on 02 Oct 2025

Probiotics in the prevention and treatment of calcium oxalate kidney stones: mechanisms and therapeutic potential

in Microorganisms in Vertebrate Digestive Systems

Jinshan Yang
Dengbao Li
Tao Li
Benzhong Jia

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1663138

5,270 views
1 citation

Original Research

Published on 02 Oct 2025

Comparison of acupuncture, moxibustion, and pharmacotherapy in improving diarrhea-predominant irritable bowel syndrome

in Microorganisms in Vertebrate Digestive Systems

Peiqin Zhang
Yao Chen
Biyu Lai
Shuangshuang Wang
Dan Li
Runlin Wen
Yaping Duan
Dan Liu
Bo Li
Chang She

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1638930

2,696 views

Original Research

Published on 02 Oct 2025

Fibromyalgia diagnosis from a multi-omics approach: a gut feeling

in Microorganisms in Vertebrate Digestive Systems

Elena Durán-González
Jorge Antolín Ramírez-Tejero
Marta Pérez-Sánchez
Carmen Morales-Torres
Rosa Gómez-Morano
Claudia Díaz-López
Antonio Martínez-Lara
David Cotán

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1641185

4,362 views

Original Research

Published on 02 Oct 2025

SADI-S and SG surgeries induce distinct bile acid profiles linked to improved glucose metabolism via microbiota interactions

in Microorganisms in Vertebrate Digestive Systems

Subo Ma
Zheng Zhang
Zhiqiang Wei
Lifu Hu
Lun Wang
Zhubin Shen
Chaonv Fang
Tao Jiang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1579149

2,148 views

Review

Published on 01 Oct 2025

Gut microbiota in hypothyroidism: pathogenic mechanisms and opportunities for precision microbiome interventions

in Microorganisms in Vertebrate Digestive Systems

Tao Jiang
Xiuqing Yang
Baihui Wu
Runchao Tao
Rongbing Chen
Libo Jin
Da Sun
Huibin Weng

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1661211

5,682 views
1 citation

Original Research

Published on 30 Sep 2025

Poly I:C-induced maternal immune activation causes schizophrenia-like behaviors in the offspring of both sexes by regulating gut microbiota and tryptophan metabolism pathway

in Microorganisms in Vertebrate Digestive Systems

Zhilong Xu
Canrun Hu
Yayan Luo

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1667164

2,896 views

Original Research

Published on 29 Sep 2025

Revealing Amur tiger family pedigrees based on age identification using fecal microbiome and kinship analysis

in Microorganisms in Vertebrate Digestive Systems

Xiaoyun Hu
Zhijian He
Chang Liu
Yifei Zhang
Dejun Mu
Valentin Yu Guskov
Kai Wang
Yong Yao
Dan Jin
Junguang Lu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1666201

2,439 views

Original Research

Published on 29 Sep 2025

Guiren Runchang granules alleviate slow transit constipation in mice by modulating gut microbiota and short-chain fatty acids

in Microorganisms in Vertebrate Digestive Systems

Xinfeng Bai
Yachao Wang
Kai Wang
Weihua Chu
Tianyu Bai

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1615297

2,385 views
1 citation

Original Research

Published on 26 Sep 2025

Bacillus velezensis NDB mitigates Aeromonas hydrophila-induced enteritis in black sea bream (Acanthopagrus schlegelii) by enhancing intestinal immunity and modulating gut microbiota

in Microorganisms in Vertebrate Digestive Systems

Zhixuan Zhang
Ze Wang
Zhonghua Wang
Haojia Yi
Xiurong Su
Rixin Wang
Tinghong Ming
Jiajie Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1660494

3,066 views
2 citations

Original Research

Published on 26 Sep 2025

Comparison of 16S ribosomal RNA hypervariable regions in microbiome studies of anorexia nervosa

in Microorganisms in Vertebrate Digestive Systems

Arunabh Sharma
Nadia Andrea Andreani
Lara Keller
Beate Herpertz-Dahlmann
Jochen Seitz
John F. Baines
Astrid Dempfle

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1665847

2,928 views

Systematic Review

Published on 26 Sep 2025

Microbiota-based interventions for autism spectrum disorder: a systematic review of efficacy and clinical potential

in Microorganisms in Vertebrate Digestive Systems

Hana Taha
Ahmad Issa
Zaid Muhanna
Majdi Al-Shehab
Tuleen Wadi
Suhib Awamleh
Yousef A. Ateiwi
Mohammad Abusido
Vanja Berggren

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1648118

6,339 views
2 citations

Systematic Review

Published on 25 Sep 2025

Effects of Bifidobacterium on metabolic parameters in overweight or obesity adults: a systematic review and meta-analysis

in Microorganisms in Vertebrate Digestive Systems

Junmei Huang
Hao Cheng

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1633434

3,982 views
2 citations

1,612 articles

articles

Editorial: Fecal Microbiota Transplants: challenges in translating microbiome research to clinical applications

Gut microbiota and metabolite profiles in HBV cirrhosis with persistent liver enzyme abnormalities

The gut-kidney axis in urolithiasis: roles of gut microbiota, metabolites, and therapeutic implications

Microbial beginnings: determinants and disruptions of the neonatal microbiome

Gut mycobiome in cardiometabolic disease progression: current evidence and future directions

The role of exercise-induced short-chain fatty acids in the gut–muscle axis: implications for sarcopenia prevention and therapy

Chinese herbal medicine promotes growth by improving nutrient utilization and rumen microbiota in suckling lambs

Differences in gut microbiota among patients with anastomotic leak following colorectal cancer surgery

Assessing the impact of non-protein nitrogen or rumen undegradable protein supplementation on rumen bacterial diversity and ruminal fermentation in grazing steers during the dry season

Dietary low levels of Eucommia ulmoides leaf extracts: effects on antioxidant capacity, immunity, and cecal microbiota in lipopolysaccharide-challenged broilers

Effects of dietary supplementation with hydroponic wheat seedlings on rumen fermentation, meat quality, amino acid and fatty acid contents, and rumen bacterial diversity in sheep

Gut viral metagenomics identifies viral signatures and their role in depression

Probiotics in the prevention and treatment of calcium oxalate kidney stones: mechanisms and therapeutic potential

Comparison of acupuncture, moxibustion, and pharmacotherapy in improving diarrhea-predominant irritable bowel syndrome

Fibromyalgia diagnosis from a multi-omics approach: a gut feeling

SADI-S and SG surgeries induce distinct bile acid profiles linked to improved glucose metabolism via microbiota interactions

Gut microbiota in hypothyroidism: pathogenic mechanisms and opportunities for precision microbiome interventions

Poly I:C-induced maternal immune activation causes schizophrenia-like behaviors in the offspring of both sexes by regulating gut microbiota and tryptophan metabolism pathway

Revealing Amur tiger family pedigrees based on age identification using fecal microbiome and kinship analysis

Guiren Runchang granules alleviate slow transit constipation in mice by modulating gut microbiota and short-chain fatty acids

Bacillus velezensis NDB mitigates Aeromonas hydrophila-induced enteritis in black sea bream (Acanthopagrus schlegelii) by enhancing intestinal immunity and modulating gut microbiota

Comparison of 16S ribosomal RNA hypervariable regions in microbiome studies of anorexia nervosa

Microbiota-based interventions for autism spectrum disorder: a systematic review of efficacy and clinical potential

Effects of Bifidobacterium on metabolic parameters in overweight or obesity adults: a systematic review and meta-analysis