ORIGINAL RESEARCH article
Sec. Chemical Biology
Necator americanus Ancylostoma Secreted Protein-2 (Na-ASP-2) Binds an Ascaroside (ascr#3) in Its Fatty Acid Binding Site
- 1Division of Biochemistry, Department of Biology, University of Fribourg, Fribourg, Switzerland
- 2Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, United States
- 3Department of Chemistry and Biochemistry & The CPRIT Synthesis and Drug-Lead Discovery Laboratory, Baylor University, Waco, TX, United States
- 4Department of Chemistry and Biochemistry, Hampton University, Hampton, VA, United States
- 5National School of Tropical Medicine, Baylor College of Medicine, Houston, TX, United States
During their infective stages, hookworms release excretory-secretory (E-S) products, small molecules, and proteins to help evade and suppress the host's immune system. Small molecules found in E-S products of mammalian hookworms include nematode derived metabolites like ascarosides, which are composed of the sugar ascarylose linked to a fatty acid side chain. The most abundant proteins found in hookworm E-S products are members of the protein family known as Ancylostoma secreted protein (ASP). In this study, two ascarosides and their fatty acid moieties were synthesized and tested for in vitro binding to Na-ASP-2 using both a ligand competition assay and microscale thermophoresis. The fatty acid moieties of both ascarosides tested and ascr#3, an ascaroside found in rat hookworm E-S products, bind to Na-ASP-2's palmitate binding cavity. These molecules were confirmed to bind to the palmitate but not the sterol binding sites. An ascaroside, oscr#10, which is not found in hookworm E-S products, does not bind to Na-ASP-2. More studies are required to determine the structural basis of ascarosides binding by Na-ASP-2 and to understand the physiological significance of these observations.
Necator americanus and Ancylostoma duodenale are hookworms causing a disease burden of over 22 million disability-adjusted life years (de Silva et al., 2003; Hotez, 2007; Murray et al., 2013; Diemert et al., 2018). The most abundant proteins secreted by third-stage infective larvae (L3) of N. americanus upon host entry are N. americanus Ancylostoma secreted protein 1 (Na-ASP-1) and N. americanus Ancylostoma secreted protein 2 (Na-ASP-2) (Hotez et al., 2003). These Ancylostoma secreted proteins are the major protein components of the L3 excretory-secretory (E-S) products that facilitate the evasion and suppression of the host's immune system and have been found in parasitic nematodes (Hawdon et al., 1995, 1996, 1999; Hawdon and Hotez, 1996; Gao et al., 2001; Zhan et al., 2003; Asojo et al., 2018; Darwiche et al., 2018). ASPs belong to the SCP/TAPS (sperm-coating protein/Tpx/antigen 5/pathogenesis related-1/Sc7) superfamily of proteins, NCBI domain cd00168 or Pfam PF00188 (Gibbs et al., 2008). Members of the SCP/TAPS superfamily are also implicated in other biological phenomena, including cellular defense such as plant responses to pathogens, sexual reproduction, and human brain tumor growth (Hawdon et al., 1999; Ding et al., 2000; Gao et al., 2001; Zhan et al., 2003; Gibbs et al., 2008, 2010).
SCP/TAPS proteins have either one or two ~15 kDa cysteine-rich CAP domains (cysteine-rich secretory protein, antigen 5, and pathogenesis-related 1) as typified by the structures of Na-ASP-2 (one CAP domain) and Na-ASP-1 (two covalently linked CAP domains). The CAP domain has multiple cavities and verified ligand-binding regions, and the first to be identified was a large central cavity that may contain a tetrad of residues, two His and two Glu that bind divalent cations including Zn2+ and Mg2+(Gibbs et al., 2008; Wang et al., 2010; Asojo et al., 2011, 2018; Mason et al., 2014; Darwiche et al., 2018). Distinct lipid-binding sites verified in SCP/TAPS proteins include a caveolin-binding motif (CBM) of the yeast CAP proteins required for in vivo transport of cholesterol and a hydrophobic channel formed by conserved central helices that bind fatty acids (Xu et al., 2012; Kelleher et al., 2014; Darwiche et al., 2016, 2018; Asojo et al., 2018). Sterols and fatty acid bind at these two different and independent binding sites on the CAP domain of SCP/TAPS proteins have been confirmed for multiple CAP proteins and with mutagenesis studies (Darwiche and Schneiter, 2017; Darwiche et al., 2017a; Asojo et al., 2018).
We previously reported the crystal structure of Na-ASP-2 and its sterol binding and transport properties (Asojo et al., 2005; Darwiche et al., 2018). The impetus for this current study is to investigate the fatty acid binding properties of Na-ASP-2. We also investigate if the major small molecules in E-S products (ascarosides) bind to Na-ASP-2, a major protein in the E-S. This is of interest because ascarosides are composed of the sugar ascarylose linked to a fatty acid moiety. Furthermore, we investigated the binding of two structurally similar ascarosides ascr#3 and oscr#10 and their fatty acid moieties. We chose these ascarosides because a high relative abundance of ascr#3 was detected in E-S products from both the infective juvenile and adult stages of rat hookworm (Nippostrongylus brasilensis) by HPLC-MS whereas oscr#10 was not present (Choe et al., 2012). N. brasilensis is a murine model of human hookworm infection and has a similar E-S proteins expression profile as the major human hookworm N. americanus (Camberis et al., 2003; Sotillo et al., 2014). We present the results of the binding studies as well as methods for the efficient synthesis of both ascarosides and their fatty acid moieties.
Materials and Methods
Synthesis of Ascarosides and Fatty Acids
Details about the synthesis of the ascarosides and fatty acids moieties produced for our studies are described in supplementary methods. Briefly, we synthesized the intact fatty acid side moieties and coupled them directly to a protected ascarylose followed by final deprotections.
Expression and Purification of Pry1 and Na-ASP-2
Recombinant proteins were produced using both P. pastoris for untagged protein and E. coli for hexa-histidine tagged protein. Untagged protein was produced as previously reported (Asojo et al., 2005; Darwiche et al., 2016). DNA encoding for Pry1 and Na-ASP-2 were amplified by PCR and cloned into NcoI and XhoI restriction sites of pET22b vector (Novagen, Merck, Darmstadt, Germany), which contains a pelB signal sequence to direct the secretion of expressed protein into the periplasmic space. Plasmids were transformed into Escherichia coli BL21 and proteins were expressed with a C-terminal polyhistidine-tag. Protein expression was induced overnight with lactose at 24°C. Cells were collected, lysed and incubated with nickel-nitrilotriacetic acid beads (Ni2+-NTA) as per the manufacturer instructions (Qiagen, Hilden, Germany). Beads were washed and proteins were eluted in 60 mM NaH2PO4, 300 mM NaCl and 300 mM imidazole, pH 8.0. Prior to microscale thermophoresis experiments, proteins were applied to ZebaTM spin desalting columns (Thermo scientific) and the buffer was exchanged to 60 mM NaH2PO4, 300 mM NaCl, pH 8.0.
In vitro Radioligand Lipid Binding Assay
The radioligand binding assay was performed as described previously (Im et al., 2005; Choudhary and Schneiter, 2012). Hundred pmol of purified untagged CAP protein (Na-ASP-2 or Pry1) in binding buffer (20 mM Tris, pH 7.5, 30 mM NaCl, 0.05% Triton X-100) was incubated for 1 h at 30 °C with different concentrations of either [3H]-cholesterol or [3H]-palmitic acid. Protein was removed from unbound ligand by adsorption to Q-sepharose beads (GE Healthcare, USA), the beads were washed, protein was eluted and the protein-bound radioligand was quantified by scintillation counting. For competition binding assays, specified concentrations of unlabeled cholesterol, palmitic acid or ligands, were included in the binding reaction. Non-specific binding was determined by performing the assays without the addition of protein. Statistical significance of data was analyzed by multiple t-test (GraphPad Prism, La Jolla, CA).
Microscale thermophoresis was performed using a Monolith NT.115 from Nanotemper Technologies (Munich, Germany) (Seidel et al., 2012; Shang et al., 2012; Zillner et al., 2012). His-tagged protein (Pry1 or Na-ASP-2) was fluorescently labeled using the RED-tris-NTA His-tag protein labeling kit (Nanotemper Technologies). Labeled protein (Pry1 or Na-ASP-2) was subsequently added to serial dilution of unlabeled ligand (ascarosides or their fatty acid moieties) in binding buffer (20 mM Tris pH 7.5, 30 mM NaCl, 0.05% Triton X-100). Each sample was loaded into standard glass capillaries, and measurements were performed at 60% laser power setting. Dissociation constant Kd was obtained by plotting the normalized fluorescence (Fnorm) against the logarithm of ligand concentration. Experiments were performed in triplicates and the Kd model of the MO Affinity Analysis software (Nanotemper Technologies, Munich, Germany) was used for data fitting.
Synthesis of Ascarosides and Fatty Acids
Since the ascarosides and fatty-acid moieties (Figure 1) required for our studies were not readily available, we adapted existing methods for their synthesis. Benzoyl protected ascarylose 8 was prepared as previously reported by Jeong et al. from commercially available L-rhamnose 6 (Jeong et al., 2005) with the exception of a modified final reduction. The previously reported reduction of lactone 7 with disiamyl borane (Jeong et al., 2005) proved irreproducible in our hands, resulting in incomplete conversion and low overall yields (~40%). Thus, an alternative was identified involving reduction with 9-BBN to provide the desired lactol 7 in improved yield (70%). With protected ascarylose 8 in hand, we next studied glycosylation at C1 to append the fatty acid side chain present in the targeted ascarosides. Previous synthetic strategies to these targets involved glycosylation of secondary alcohols bearing long alkyl chains with a terminal alkene which was subsequently utilized for late stage cross metathesis or oxidations (Jeong et al., 2005; Butcher et al., 2009; Martin et al., 2009; Noguez et al., 2012; Srinivasan et al., 2012; Hollister et al., 2013). Since we intended to study the binding affinity of the natural ascarosides and their intact fatty acid moieties independently, we synthesized the intact fatty acid side moieties 9 and 11 and coupled them directly to protected ascarylose 8 during the penultimate step of the synthetic sequence. This strategy provided rapid access to ascarosides 1 and 2 along with fatty acid derivatives 3-5 for screening. Lewis acid-mediated glycosylation with BF3•Et2O of fatty acid 9 (see Supplementary Material for synthesis details) and commercially available acid 11 (Jeong et al., 2005) proceeded as expected uneventfully and provided protected ascarosides 10 and 12 in 68 and 66% yield, respectively. Subsequent global deprotection with lithium hydroxide gave ascr#3 (1) and oscr#10 (2), Figure 2.
Figure 1. Targeted ascarosides and their fatty acid moieties. The corresponding ascarosides are ascr#3 (1); oscr#10 (2) and their side chain moieties are 3-5. Compound names are 3 = (R)-8-hydroxynonanoic acid, 4 = (R, E)-8-hydroxynon-2-enoic acid, and 5 = 9-hydroxynonanoic acid.
Figure 2. Synthesis of ascarosides. The synthetic pathway designed for protected ascarylose 8, ascr#3 (1), oscr#10 (2) are illustrated. Detailed synthesis methods are described in the supplementary methods.
Na-ASP-2 Binds Cholesterol and Palmitic Acid
Na-ASP-2 has distinct sterol and palmitate binding cavities and can transport sterol in vivo (Darwiche et al., 2018). The in vitro cholesterol-binding activity of Na-ASP-2 was examined using increasing concentrations of radiolabeled [3H]-cholesterol and a constant concentration of purified protein, Figure 3A. Addition of equimolar or excess concentration of unlabeled cholesterol reduced binding of the radioligand, indicating that binding is specific, Figures 3A,B. Na-ASP-2 displayed saturable binding of cholesterol with an apparent dissociation constant Kd of 2.1 μM. Na-ASP-2 has similar cholesterol binding affinity as reported for other SCP/TAPS family members from yeast, Saccharomyces cerevisiae (Pry1, 1.9 μM), Brugia malayi (Bm-VAL-1, 0.9 μM), Heligmosomoides polygyrus (Hp-VAL-4, 1.53 μM), and Schistosoma mansoni (Sm-VAL-4, 2.4 μM) (Kelleher et al., 2014; Darwiche et al., 2016, 2018; Asojo et al., 2018).
Figure 3. Na-ASP-2 binds both cholesterol and free palmitic acid. (A) Ligand binding of [3H]-cholesterol to Na-ASP-2. Purified Na-ASP-2 (100 pmol) was incubated with increasing concentrations of [3H]-cholesterol (100–400 pmol), in absence and presence of 400 pmol of unlabeled cholesterol (chol). The protein was separated from the unbound ligand by adsorption to an anion-exchange matrix and the protein-bound radioligand was quantified by scintillation counting. The background curve shows values obtained in the absence of added protein. Data represent mean ± SD of 3 independent experiments. (B) Competitive binding of unlabeled cholesterol (50 or 5,000 pmol) to Na-ASP-2. Binding of [3H]-cholesterol (50 pmol) to Na-ASP-2 (100 pmol) was assessed in the presence of the indicated concentrations of unlabeled cholesterol (chol). Each data point is the average of duplicate assays and represents the amount of [3H]-cholesterol bound relative to a control containing no unlabeled cholesterol. (C) Ligand binding of [3H]-palmitic acid to Na-ASP-2. Purified Na-ASP-2 (100 pmol) was incubated with increasing concentrations of [3H]-palmitic acid (100–400 pmol), in absence and presence of 400 pmol of unlabeled palmitic acid (pal). (D) Competitive binding of unlabeled palmitic acid (50 or 5,000 pmol) to Na-ASP-2. Binding of [3H]-palmitic acid (50 pmol) to Na-ASP-2 (100 pmol) was assessed in the presence of the indicated concentration of unlabeled palmitic acid (pal). Each data point is the average of duplicate assays and represents the amount of [3H]-palmitic acid bound relative to a control containing only labeled palmitic acid. Data represent mean ± SD of three independent experiments. Asterisks denote statistical significance relative to the control containing only the radiolabeled ligand and either purified Na-ASP-2 or Pry1. (**p < 0.001; *p < 0.01).
Tablysin-15, a horsefly SCP/TAPS protein was shown to bind fatty acids via a hydrophobic pocket formed between two central helices (Ma et al., 2011). This hydrophobic pocket is observed in other SCP/TAPS proteins and we previously confirmed the ability of these proteins to bind palmitic acid in vitro (Kelleher et al., 2014; Darwiche et al., 2016, 2018; Asojo et al., 2018). To examine whether Na-ASP-2 can bind palmitic acid, we carried out direct binding studies using [3H]-palmitic acid as radiolabeled ligand, Figure 3C. For competition binding assays, binding of Na-ASP-2 to palmitic acid was reduced in the presence of unlabeled palmitic acid, indicating that binding is specific, Figure 3D. Based on the radioligand binding assay, Na-ASP-2 showed a saturable binding for palmitic acid with an apparent Kd of 95 μM, which is of the same magnitude as previously measured for the SCP/TAPS family members from yeast (Pry1, Kd = 112 μM), Brugia malayi (Bm-VAL-1, Kd = 83 μM), and comparable to tablysin-15 (Kd = 94 μM) (Kelleher et al., 2014; Darwiche et al., 2016, 2018; Asojo et al., 2018). Taken together our results indicate that Na-ASP-2 binds both cholesterol and palmitic acid in vitro. It is important to point out that the parasite proteins used for the competition assay do not have a His-tag and was 99+% pure protein that was previously used for crystallization studies. Tablysin-15 has a His-tag and was produced in E. coli. Similar Kd was measured for competition assays for Pry-1 using both hexa-histidine tagged or untagged protein and with protein produced from E. coli or P. pastoris and our previous studies indicate that the presence of the His-tag did not affect the ability to bind fatty acids and sterols (Darwiche et al., 2016, 2017a).
Fatty Acids and Ascarosides Bind Selectively to the Palmitate-Binding Cavity
Having confirmed the ability of Na-ASP-2 to bind cholesterol, we carried out competitive binding studies of ascarosides and their fatty acid moieties against radiolabeled cholesterol. At a concentration of 50 pmol, the typical concentration for our cholesterol binding assay, neither ascarosides [ascr#3 (1) and oscr#10 (2)] nor fatty acids (3-5) competed with the radiolabelled [3H]-cholesterol (50 pmol) for binding to Na-ASP-2, Figure 4A. We also tested if the ascarosides or their fatty acid moieties bind to the fatty acid binding cavity. Our studies showed that the binding of [3H]-palmitic acid by Na-ASP-2 was competed by the ascaroside, ascr#3 (1) and by all the fatty acid moieties 3-5 tested with the same order of magnitude, but not by the ascaroside, oscr#10 (2), Figure 4B. We tested the ability of Pry1, a SCP/TAPS protein from S. cerevisiae, an organism that does not contain ascarosides, to bind to the same ligands. Our analysis revealed that while the fatty acids (3-5) competed for palmitic acid binding to Pry1, neither ascr#3 (1) nor oscr#10 (2) bound to Pry1, Figure 4C. Furthermore, addition of excess ligands [fatty acids (3-5)] competed with radioligand binding while binding of [3H]-palmitic acid to Pry1 could not be competed for by the addition of excess unlabeled ascr#3 (1) or oscr#10 (2), Figure 4C. These competition studies reveal that Na-ASP-2 binds ascr#3 (1) through its fatty-acid binding pocket.
Figure 4. Binding of ligands to Na-ASP-2 and Pry1. (A) Free fatty acids and ascarosides fail to compete with [3H]-cholesterol for binding to Na-ASP-2. Binding of [3H]-cholesterol (50 pmol) to Na-ASP-2 (100 pmol) was assessed in the presence of (50 pmol and 500 pmol) of unlabeled ascarosides or fatty acid moieties (1-5) (B) Fatty acids moieties and ascr#3 compete with [3H]-palmitic acid for binding to Na-ASP-2. (C) Only fatty acids moieties compete [3H]-palmitic acid for binding to Pry1. Competitive binding was tested with either 50 or 500 pmol of the unlabeled ligands and 50 pmol of [3H]-palmitic acid for binding to 100 pmol purified Na-ASP-2 or Pry1. The ascarosides tested are (1) (ascr#3) and (2) (oscr#10) while the fatty acids are 3 [(R)-8-hydroxynonanoic acid], 4 [(R, E)-8-hydroxynon-2-enoic acid], and 5 (9-hydroxynonanoic acid). Data represent mean ± SD of 3 independent experiments. Asterisks denote statistical significance relative to the control containing only the radiolabeled ligand and either purified Na-ASP-2 or Pry1. (**p < 0.001; *p < 0.01). n.s., not significant.
We independently validated the direct binding of ligands to Pry1 and Na-ASP-2 by microscale thermophoresis and determined binding constants, Figure 5. Our analyses reveal that Pry1 does not bind ascr#3 or oscr#10, but it binds all the fatty acids tested including the moieties of both ascr#3 and oscr#10. Na-ASP-2, binds ascr#3 with a Kd of 142 μM but does not bind oscr#10. The Kd is in the same order of magnitude as the binding of palmitic acid and is consistent with the results obtained by the ligand competition assays (Kelleher et al., 2014; Darwiche et al., 2016, 2017a,b, 2018; Asojo et al., 2018).
Figure 5. Na-ASP-2 selectively binds ascr#3 but not oscr#10. Binding of ascarosides and their fatty acid moieties by Pry1 and Na-ASP-2 as measured by microscale thermophoresis. (A,G) Palmitic acid; (B,H) ascr#3; (C,I) oscr#10; (D,J) (R)-8-hydroxynonanoic acid; (E,K) (R, E)-8-hydroxynon-2-enoic acid; (F,L) 9-hydroxynonanoic acid. Pry1 binds palmitic acid and free hydroxylated nanonoic acids with similar affinities but binds neither the ascarosides ascr#3 and oscr#10. Na-ASP-2 binds palmitic acid, ascr#3 and free hydroxylated nanonoic acids with similar affinities but not oscr#10. The Kd values are indicated in each figure with N/A (not applicable) where there is no binding. Data represent mean ± SD of three independent experiments.
We present here efficient methods to synthesize ascarosides and their fatty acid moieties. We also present data revealing that the fatty acid moieties of ascarosides compete for binding to the palmitate-binding cavities of both Pry1 and Na-ASP-2 but do not bind to the sterol binding cavity. The micromolar binding affinity of ascr#3 and free fatty acids are comparable to that observed for palmitic acid binding by other SCP/TAPS proteins (Kelleher et al., 2014; Darwiche et al., 2016, 2017a,b, 2018; Asojo et al., 2018). While it is unclear if ascr#3 binding is physiologically relevant, the finding that ascr#3 binds Na-ASP-2 is interesting considering that a high relative abundance of ascr#3 was detected in E-S products from both the infective juvenile and adult stages of rat hookworm (Nippostrongylus brasilensis) by HPLC-MS (Choe et al., 2012). It is plausible that ascr#3 is present in human hookworms since there appears to be a conservation of ascarosides production in families of nematodes (Choe et al., 2012). A blast search of the Na-ASP-2 sequence against the N. brasilensis proteins reveals several SCP/TAPs proteins, which share over 45% sequence similarity with Na-ASP-2. Even more remarkable, the residues and predicted structures of the helical regions notably residues corresponding to (α1 and α3) that form the fatty acid-binding cavity are partially conserved, Figure 6A. This structural similarity suggests that these proteins likely behave similarly to Na-ASP-2 as we observed previously for the orthologs from B. malayi and H. polygyrus (Asojo et al., 2018; Darwiche et al., 2018). Additionally, we observed that the incorporation of the ascarylose sugar abrogated the ability of these fatty acids to bind to Pry1. A comparison of the helices bordering the palmitic acid binding cavities of Pry1 and Na-ASP-2 reveals that Pry1 has shorter helices than Na-ASP-2, which results in a smaller hydrophobic binding pocket in Pry1 compared to Na-ASP-2, Figure 6B. This smaller size may explain the failure of Pry1 to accommodate ascarosides as opposed to free fatty acids. The inability of Na-ASP-2 to bind oscr#10 cannot be explained by the size difference of the cavities and suggests a new hypothesis that we plan to test in future; that ascarosides binding may be specific for certain SCP/TAPS proteins, indicating a possible functional relationship between ascarosides and parasite SCP/TAPS proteins.
Figure 6. Comparison of fatty acid binding cavities of Na-ASP-2 and Pry1. (A) Structure based alignment of Na-ASP-2, Pry1, and three N. brasilensis SCP/TAPs proteins (genbank codes VDL79275.1; VDL83979.1; and VDL79274.1). The sequences are aligned with ClustalW Omega and the secondary structural features are illustrated with the coordinates of Hp-VAL-4 and Pry1 using ESPript (Gouet et al., 2003). The alpha helices (alpha 1 and alpha 3) that form the palmitate-binding cavity have similar lengths for Na-ASP-2 and the N. brasilensis proteins whereas Pry1 has shorter helices. The secondary structure elements shown are alpha helices (α), 310-helices (h), beta strands (β), and beta turns (TT). Identical residues are shown in solid red, and conserved residues are in red. The locations of the cysteine residues involved in disulfide bonds are numbered in green. (B) Both of the helices (α1 and α3) forming the palmitic acid binding cavity of Pry1 (cyan) are shorter than those from Na-ASP-2 (gray). Also shown in magenta is the stick structure of palmitate superposed from the X-ray structure of the complex of tablysin-15 with palmitate (Ma et al., 2011).
The ability of Na-ASP-2 to bind cholesterol is intriguing given the evidence that hookworm and other parasite infections induce significant changes in lipid profile in patients suggesting that there may be some factors and proteins that help the parasite consume cholesterol (Bansal et al., 2005). As small soluble parasite proteins that can bind sterols and lipids, Na-ASP-2 and other parasite ASPs may play multiple roles in important processes that occur at the different life-stages during which they are produced. Hookworm infective larvae penetrate the skin in response to lipids during the transition from free-living to infectious state (Haas et al., 2005a,b). These free fatty acids were chemotactic stimuli for the skin penetration by hookworm larvae (Haas et al., 2005a,b). Additionally, the infective larvae of N. americanus, like other parasites, synthesize eicosanoids, which may stimulate inflammation and be important for immunomodulation and immune evasion (Salafsky and Siddiqui, 1990; Belley and Chadee, 1995). Previous studies have shown that eicosanoids bind to the fatty-acid binding cavity, and reported structures of tablysin-15 with either palmitate or an eicosanoid reveal similar binding in the same cavity (Ma et al., 2011). It is also possible that by binding to ascarosides and other small molecules, Na-ASP-2 may have roles in immune evasion or some other signaling cascade by infective N. americanus larvae. Na-ASP-2 is immunomodulatory and recruits neutrophil both in vivo and in vitro (Bower et al., 2008). Interestingly, Na-ASP-2 induced neutrophil recruitment appeared to be a mechanism of immune suppression by hookworm parasites (Tribolet et al., 2015). Similarly, adult hookworms secrete many proteins that have a potential immunomodulatory function, and among these are many ASPs. These proteins function by inhibiting the inflammatory reaction, promoting effector cells apoptosis, or skewing immune responses to help hookworms survive inside the host (Loukas and Prociv, 2001). Clarifying how some of these proteins bind host and parasite small molecules and proteins offers insights into host-parasite interactions. Understanding how Na-ASP-2 interacts with host and parasite molecules is also important because recombinant Na-ASP-2 remains an interesting hookworm vaccine candidate, especially when modified to decrease its allergenicity or used as a pediatric vaccine before the development of anti-hookworm IgE (Zhan et al., 2012).
In summary, our results reveal that the fatty acid moieties of ascarosides, ascr#3 and oscr#10 bind Na-ASP-2 and Pry1, with the latter SCP/TAPS protein from Saccharomyces cerevisiae serving as a control. As shown by the palmitic acid competition assay, binding is through the fatty acid binding cavity. Additionally, ascr#3 an ascaroside that is present in mammalian hookworm E-S products binds to Na-ASP-2. Oscr#10 which is not found in hookworm E-S products does not bind to Na-ASP-2. Neither ascr#3 nor oscr#10 bind Pry1. Future studies will identify how ascarosides precisely interact with parasite SCP/TAPS protein and determine the physiological relevance of the fatty acid-binding cavity of Na-ASP-2.
Data Availability Statement
The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation. Publicly available datasets were analyzed in this study. This data can be found here: Genbank, VDL79275.1; VDL83979.1; and VDL79274.1.
OA, OEA, RS, RD, KH, and DR: designed the studies. OEA, RD, and NT: conducted experiments. All authors contributed expertise and to the final manuscript, in doing so, all authors agree to be accountable for the content of the work.
This study was supported in part by funds from the Collaborative Faculty Research Investment Program of Baylor University, Baylor Scott & White Health and Baylor College of Medicine to OA and DR and the Swiss National Science Foundation grant 31003A_173003 to RS. Support by Baylor University of the CPRIT Synthesis & Drug Lead Discovery Laboratory at Baylor is also gratefully acknowledged.
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
This manuscript has been released as a pre-print at bioRxiv 2020.08.07.224964 (El Atab et al., 2020).
Asojo, O. A., Darwiche, R., Gebremedhin, S., Smant, G., Lozano-Torres, J. L., Drurey, C., et al. (2018). Heligmosomoides polygyrus venom allergen-like protein-4 (HpVAL-4) is a sterol binding protein. Int. J. Parasitol. 48, 359–369. doi: 10.1016/j.ijpara.2018.01.002
Asojo, O. A., Goud, G., Dhar, K., Loukas, A., Zhan, B., Deumic, V., et al. (2005). X-ray structure of Na-ASP-2, a pathogenesis-related-1 protein from the nematode parasite, necator americanus, and a vaccine antigen for human hookworm infection. J. Mol. Biol. 346, 801–814. doi: 10.1016/j.jmb.2004.12.023
Asojo, O. A., Koski, R. A., and Bonafe, N. (2011). Structural studies of human glioma pathogenesis-related protein 1. Acta crystallographica Section D, biological crystallography. 67, 847–855. doi: 10.1107/S0907444911028198
Bower, M. A., Constant, S. L., and Mendez, S. (2008). Necator americanus: the Na-ASP-2 protein secreted by the infective larvae induces neutrophil recruitment in vivo and in vitro. Exp. Parasitol. 118, 569–575. doi: 10.1016/j.exppara.2007.11.014
Butcher, R. A., Ragains, J. R., and Clardy, J. (2009). An indole-containing dauer pheromone component with unusual dauer inhibitory activity at higher concentrations. Org. Lett. 11, 3100–3103. doi: 10.1021/ol901011c
Choe, A., von Reuss, S. H., Kogan, D., Gasser, R. B., Platzer, E. G., Schroeder, F. C., et al. (2012). Ascaroside signaling is widely conserved among nematodes. Curr. Biol. 22, 772–780. doi: 10.1016/j.cub.2012.03.024
Choudhary, V., and Schneiter, R. (2012). Pathogen-Related Yeast (PRY) proteins and members of the CAP superfamily are secreted sterol-binding proteins. Proc. Natl. Acad. Sci. U.S.A. 109, 16882–16887. doi: 10.1073/pnas.1209086109
Darwiche, R., El Atab, O., Baroni, R. M., Teixeira, P., Mondego, J. M. C., Pereira, G. A. G., et al. (2017a). Plant pathogenesis-related proteins of the cacao fungal pathogen Moniliophthora perniciosa differ in their lipid-binding specificities. J. Biol. Chem. 292, 20558–20569 doi: 10.1074/jbc.M117.811398
Darwiche, R., Kelleher, A., Hudspeth, E. M., Schneiter, R., and Asojo, O. A. (2016). Structural and functional characterization of the CAP domain of pathogen-related yeast 1 (Pry1) protein. Sci. Rep. 6:28838. doi: 10.1038/srep28838
Darwiche, R., Lugo, F., Drurey, C., Varossieau, K., Smant, G., Wilbers, R. H. P., et al. (2018). Crystal structure of brugia malayi venom allergen-like protein-1 (BmVAL-1), a vaccine candidate for lymphatic filariasis. Int. J. Parasitol. 48, 371–378. doi: 10.1016/j.ijpara.2017.12.003
Darwiche, R., Mene-Saffrane, L., Gfeller, D., Asojo, O. A., and Schneiter, R. (2017b). The pathogen-related yeast protein Pry1, a member of the CAP protein superfamily, is a fatty acid-binding protein. J. Biol. Chem. 292, 8304–8314. doi: 10.1074/jbc.M117.781880
Darwiche, R., and Schneiter, R. (2017). A ligand-binding assay to measure the affinity and specificity of sterol-binding proteins in vitro. Methods Mol. Biol. 1645, 361–368. doi: 10.1007/978-1-4939-7183-1_25
de Silva, N. R., Brooker, S., Hotez, P. J., Montresor, A., Engels, D., and Savioli, L. (2003). Soil-transmitted helminth infections: updating the global picture. Trends Parasitol. 19, 547–551. doi: 10.1016/j.pt.2003.10.002
Diemert, D., Campbell, D., Brelsford, J., Leasure, C., Li, G., Peng, J., et al. (2018). Controlled human hookworm infection: accelerating human hookworm vaccine development. Open Forum Infect Dis. 5:ofy083. doi: 10.1093/ofid/ofy083
Ding, X., Shields, J., Allen, R., and Hussey, R. S. (2000). Molecular cloning and characterisation of a venom allergen AG5-like cDNA from meloidogyne incognita. Int. J. Parasitol. 30, 77–81. doi: 10.1016/S0020-751900165-4
El Atab, O., Darwiche, R., Truax, N. J., Schneiter, R., Hull, K. G., Romo, D., et al. (2020). Necator americanus Ancylostoma secreted protein-2 (Na-ASP-2) selectively binds an ascaroside (ascr#3). bioRxiv. 2020:2020.08.07.224964 doi: 10.11.01/2020.08.07.224.964
Gao, B., Allen, R., Maier, T., Davis, E. L., Baum, T. J., and Hussey, R. S. (2001). Molecular characterisation and expression of two venom allergen-like protein genes in Heterodera glycines. Int. J. Parasitol. 31, 1617–1625. doi: 10.1016/S0020-751900300-9
Gibbs, G. M., Lo, J. C., Nixon, B., Jamsai, D., O'Connor, A. E., Rijal, S., et al. (2010). Glioma pathogenesis-related 1-like 1 is testis enriched, dynamically modified, and redistributed during male germ cell maturation and has a potential role in sperm-oocyte binding. Endocrinology 151, 2331–2342. doi: 10.1210/en.2009-1255
Gibbs, G. M., Roelants, K., and O'Bryan, M. K. (2008). The CAP superfamily: cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins–roles in reproduction, cancer, and immune defense. Endocr. Rev. 29, 865–897. doi: 10.1210/er.2008-0032
Gouet, P., Robert, X., and Courcelle, E. (2003). ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res. 31, 3320–3323. doi: 10.1093/nar/gkg556
Haas, W., Haberl, B., Syafruddin, I. I., Kallert, D., Kersten, S., et al. (2005a). Behavioural strategies used by the hookworms Necator americanus and Ancylostoma duodenale to find, recognize and invade the human host. Parasitol. Res. 95, 30–39. doi: 10.1007/s00436-004-1257-7
Haas, W., Haberl, B., Syafruddin, I. I., Kersten, S., and Syafruddin. (2005b). Infective larvae of the human hookworms Necator americanus and Ancylostoma duodenale differ in their orientation behaviour when crawling on surfaces. Parasitol. Res. 95, 25–29. doi: 10.1007/s00436-004-1256-8
Hawdon, J. M., Jones, B. F., Hoffman, D. R., and Hotez, P. J. (1996). Cloning and characterization of Ancylostoma-secreted protein. A novel protein associated with the transition to parasitism by infective hookworm larvae. J. Biol. Chem. 271, 6672–6678. doi: 10.1074/jbc.271.12.6672hgfd
Hawdon, J. M., Jones, B. F., and Hotez, P. J. (1995). Cloning and characterization of a cDNA encoding the catalytic subunit of a cAMP-dependent protein kinase from ancylostoma caninum third-stage infective larvae. Mol. Biochem. Parasitol. 69, 127–130. doi: 10.1016/0166-685100203-Y
Hawdon, J. M., Narasimhan, S., and Hotez, P. J. (1999). Ancylostoma secreted protein 2, cloning and characterization of a second member of a family of nematode secreted proteins from Ancylostoma caninum. Mol. Biochem. Parasitol. 99, 149–165. doi: 10.1016/S0166-685100011-0
Hollister, K. A., Conner, E. S., Zhang, X., Spell, M., Bernard, G. M., Patel, P., et al. (2013). Ascaroside activity in caenorhabditis elegans is highly dependent on chemical structure. Bioorg. Med. Chem. 21, 5754–5769. doi: 10.1016/j.bmc.2013.07.018
Hotez, P. J., Zhan, B., Bethony, J. M., Loukas, A., Williamson, A., Goud, G. N., et al. (2003). Progress in the development of a recombinant vaccine for human hookworm disease: the human hookworm vaccine initiative. Int. J. Parasitol. 33, 1245–1258. doi: 10.1016/S0020-751900158-9
Jeong, P. Y., Jung, M., Yim, Y. H., Kim, H., Park, M., Hong, E., et al. (2005). Chemical structure and biological activity of the caenorhabditis elegans dauer-inducing pheromone. Nature 433, 541–545. doi: 10.1038/nature03201
Kelleher, A., Darwiche, R., Rezende, W. C., Farias, L. P., Leite, L. C., Schneiter, R., et al. (2014). Schistosoma mansoni venom allergen-like protein 4 (SmVAL4) is a novel lipid-binding SCP/TAPS protein that lacks the prototypical CAP motifs. Acta Crystallogr. Section D Biol. Crystallogr. 70, 2186–2196. doi: 10.1107/S1399004714013315
Ma, D., Xu, X., An, S., Liu, H., Yang, X., Andersen, J. F., et al. (2011). A novel family of RGD-containing disintegrins (Tablysin-15) from the salivary gland of the horsefly Tabanus yao targets alphaIIbbeta3 or alphaVbeta3 and inhibits platelet aggregation and angiogenesis. Thromb. Haemost. 105, 1032–1045. doi: 10.1160/TH11-01-0029
Martin, R., Schmidt, A. W., Theumer, G., Krause, T., Entchev, E. V., Kurzchalia, T. V., et al. (2009). Synthesis and biological activity of the (25R)-cholesten-26-oic acids–ligands for the hormonal receptor DAF-12 in caenorhabditis elegans. Org. Biomol. Chem. 7, 909–920. doi: 10.1039/b817358c
Mason, L., Tribolet, L., Simon, A., von Gnielinski, N., Nienaber, L., Taylor, P., et al. (2014). Probing the equatorial groove of the hookworm protein and vaccine candidate antigen, Na-ASP-2. Int. J. Biochem. Cell Biol. 50, 146–155. doi: 10.1016/j.biocel.2014.03.003
Murray, C. J., Ortblad, K. F., Guinovart, C., Lim, S. S., Wolock, T. M., Roberts, D. A., et al. (2013). Global, regional, and national incidence and mortality for HIV, tuberculosis, and malaria during 1990-2013, a systematic analysis for the global burden of disease study Lancet 384, 1005–1070. doi: 10.1016/S0140-673660844-8
Noguez, J. H., Conner, E. S., Zhou, Y., Ciche, T. A., Ragains, J. R., and Butcher, R. A. (2012). A novel ascaroside controls the parasitic life cycle of the entomopathogenic nematode Heterorhabditis bacteriophora. ACS Chem. Biol. 7, 961–966. doi: 10.1021/cb300056q
Salafsky, B. F. A., and Siddiqui, A. (1990). “Necator americanus: factors influencing skin penetration by larvae,” in Hookworm disease: current status and new directions, eds G. A. Schad and K. S. Warren (London: Taylor and Francis). 329–339
Seidel, S. A., Wienken, C. J., Geissler, S., Jerabek-Willemsen, M., Duhr, S., Reiter, A., et al. (2012). Label-free microscale thermophoresis discriminates sites and affinity of protein-ligand binding. Angew. Chem. Int. Ed. Engl. 51, 10656–10659. doi: 10.1002/anie.201204268
Shang, X., Marchioni, F., Sipes, N., Evelyn, C. R., Jerabek-Willemsen, M., Duhr, S., et al. (2012). Rational design of small molecule inhibitors targeting RhoA subfamily Rho GTPases. Chem. Biol. 19, 699–710. doi: 10.1016/j.chembiol.2012.05.009
Sotillo, J., Sanchez-Flores, A., Cantacessi, C., Harcus, Y., Pickering, D., Bouchery, T., et al. (2014). Secreted proteomes of different developmental stages of the gastrointestinal nematode Nippostrongylus brasiliensis. Mol. Cell. Proteomics 13, 2736–2751. doi: 10.1074/mcp.M114.038950
Srinivasan, J., von Reuss, S. H., Bose, N., Zaslaver, A., Mahanti, P., Ho, M. C., et al. (2012). A modular library of small molecule signals regulates social behaviors in caenorhabditis elegans. PLoS Biol. 10:e1001237. doi: 10.1371/journal.pbio.1001237
Tribolet, L., Cantacessi, C., Pickering, D. A., Navarro, S., Doolan, D. L., Trieu, A., et al. (2015). Probing of a human proteome microarray with a recombinant pathogen protein reveals a novel mechanism by which hookworms suppress B-cell receptor signaling. J. Infect. Dis. 211, 416–425 doi: 10.1093/infdis/jiu451
Wang, Y. L., Kuo, J. H., Lee, S. C., Liu, J. S., Hsieh, Y. C., Shih, Y. T., et al. (2010). Cobra CRISP functions as an inflammatory modulator via a Novel Zn2+- and heparan sulfate-dependent transcriptional regulation of endothelial cell adhesion molecules. J. Biol. Chem. 285, 37872–37883. doi: 10.1074/jbc.M110.146290
Xu, X., Francischetti, I. M., Lai, R., Ribeiro, J. M., and Andersen, J. F. (2012). Structure of protein having inhibitory disintegrin and leukotriene scavenging functions contained in single domain. J. Biol. Chem. 287, 10967–10976. doi: 10.1074/jbc.M112.340471
Zhan, B., Liu, Y., Badamchian, M., Williamson, A., Feng, J., Loukas, A., et al. (2003). Molecular characterisation of the Ancylostoma-secreted protein family from the adult stage of ancylostoma caninum. Int. J. Parasitol. 33, 897–907. doi: 10.1016/S0020-751900111-5
Zhan, B., Santiago, H., Keegan, B., Gillespie, P., Xue, J., Bethony, J., et al. (2012). Fusion of Na-ASP-2 with human immunoglobulin Fcgamma abrogates histamine release from basophils sensitized with anti-Na-ASP-2 IgE. Parasite Immunol. 34, 404–411. doi: 10.1111/j.1365-3024.2012.01371.x
Zillner, K., Jerabek-Willemsen, M., Duhr, S., Braun, D., Langst, G., and Baaske, P. (2012). Microscale thermophoresis as a sensitive method to quantify protein: nucleic acid interactions in solution. Methods Mol. Biol. 815, 241–252. doi: 10.1007/978-1-61779-424-7_18
Keywords: venom allergen-like (VAL), TAPs [testis specific proteins (Tpx)/antigen 5 (Ag5)/pathogenesis related-1 (PR-1)/Sc7], CAP [cysteine-rich secretory protein (CRISP)/antigen 5/pathogenesis related-1 (PR-1)], lipid binding, sperm coating protein (SCP)
Citation: El Atab O, Darwiche R, Truax NJ, Schneiter R, Hull KG, Romo D and Asojo OA (2020) Necator americanus Ancylostoma Secreted Protein-2 (Na-ASP-2) Binds an Ascaroside (ascr#3) in Its Fatty Acid Binding Site. Front. Chem. 8:608296. doi: 10.3389/fchem.2020.608296
Received: 20 September 2020; Accepted: 25 November 2020;
Published: 17 December 2020.
Edited by:Julio A. Camarero, University of Southern California, Los Angeles, United States
Reviewed by:Paul Giacomin, James Cook University, Australia
Norelle Daly, James Cook University, Australia
Lisa Harrison, Yale University, United States
Copyright © 2020 El Atab, Darwiche, Truax, Schneiter, Hull, Romo and Asojo. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Oluwatoyin A. Asojo, firstname.lastname@example.org
†These authors have contributed equally to this work