Abstract
Biota are found in glaciers, ice sheets and permafrost. Ice bound micro-organisms evolve in a complex mobile environment facilitated or hindered by a range of bulk and surface interactions. When a particle is embedded in a host solid near its bulk melting temperature, a melted film forms at the surface of the particle in a process known as interfacial premelting. Under a temperature gradient, the particle is driven by a thermomolecular pressure gradient toward regions of higher temperatures in a process called thermal regelation. When the host solid is ice and the particles are biota, thriving in their environment requires the development of strategies, such as producing exopolymeric substances (EPS) and antifreeze glycoproteins (AFP) that enhance the interfacial water. Therefore, thermal regelation is enhanced and modified by a process we term bio-enhanced premelting. Additionally, the motion of bioparticles is influenced by chemical gradients influenced by nutrients within the icy host body. We show how the overall trajectory of bioparticles is controlled by a competition between thermal regelation and directed biolocomotion. By re-casting this class of regelation phenomena in the stochastic framework of active Ornstein-Uhlenbeck dynamics, and using multiple scales analysis, we find that for an attractive (repulsive) nutrient source, that thermal regelation is enhanced (suppressed) by biolocomotion. This phenomena is important in astrobiology, the biosignatures of extremophiles and in terrestrial paleoclimatology.
Introduction
Ice sheets are an essential reservoir of information on past climate and they contain an important record of micro-organisms on Earth, recording ice microbes and their viruses over long periods [1, 2]. In these extreme environments, the abundance of virus is well correlated with bacterial abundance, but is 10–100 times lower than in temperate aquatic ecosystems [3]. Even in these harsh conditions, the virus infection rate is relatively high [4], leading to the expectation of low long-term survival rates. However, recent studies have shown that some viruses develop survival strategies to maintain a long-term relationship with their hosts [4, 5], possibly up to thousands of years [6]. For example, viruses such as bacteriophages can switch to a lysogenic life strategy enabling them to replicate and maintain themselves in the bacterial population without lysis over multiple generations [4]. Moreover, among these viruses some can provide immunity to their hosts against other viruses [4, 7], or manipulate their metabolism to facilitate nutrient acquisition by affecting motility genes [6]. Indeed, motile biota are found to be active in ice for substantial periods. For example, recently a 30,000 year old giant virus Pithovirus sibericum was found in permafrost along with microbes and nematodes, and viable bacteria have been found in 750,000 year old glacial ice. Basal ice often contains subglacial debris and sediment, which serve as a source of nutrients and organic matter, providing a habitat for micro-organisms adapted to subfreezing conditions [8, 9]. Additionally, the microbiomes of sediment rich basal ices are distinct from those found in glacial ice and are equivalent to those found in permafrost [8], expanding the nature of subfreezing habitats.
Ice cores provide the highest resolution records of past climate states [10–15]. Of particular relevance to our study is their role as a refuge for micro-organisms, from the recent past [16, 17] to millennia [18–20]. Ice microbes are taxonomically diverse and have a wide range of taxonomic relatives [9, 19, 21–23]. Common algae taxa are centric and pennate diatoms, dinoflagellates and flagellates [24–26], whereas common bacterial taxa are pseudomonadota, actinobacteria, firmicutes and bacteroidetes [6, 27]. Many of these microbes have different motility mechanisms [28, 29] from swimming (e.g., Chlamydomonas nivalis [30] or Methylobacterium [6, 31, 32]) to gliding (e.g., diatoms [33, 34] or Bacillus subtilis [19, 35]), which can be used to assess their locomotion. Examples of biological proxies include diatoms [36] and bacteria colonies [37, 38], reflecting a unique range of physical-biological interactions in the climate system. Therefore, understanding the relationship between the evolution of ice bound micro-organisms and proxy dating methods is a key aspect of understanding the covariation of life and climate.
Finally, such understanding is essential for the study of extraterrestrial life. In our own solar system, despite the debate regarding the existence of bulk water on Mars [39], thin water films, such as those studied here, hold the most potential for harboring life under extreme conditions. Indeed, lipids, nucleic acids, and amino acids influenced by active motility may serve as biosignatures of extra terrestial life. Combining measurements of diffusivity-characterized-motility [40, 41] with bioparticle distribution observed on Earth, provides crucial information for development of new instrumentation to detect the presence of extra terrestrial life [41, 42]. Indeed, recently micro-organisms trapped in primary fluid inclusions in halite for millions of years have been discovered [43], providing promise for both terrestrial and extraterrestrial biosignature detection.
When a particle is embedded in ice near the bulk melting temperature, the ice may melt at the particle-ice surface in a process known as interfacial premelting [44]. The thickness of the melt film depends on the temperature, impurities, material properties and geometry. A temperature gradient is accompanied by a thermomolecular pressure gradient that drives the interfacial liquid from high to low temperatures, and hence the particle migrates from low to high temperatures in a process called thermal regelation [44–48]. Thermal regelation of inert particles plays a major role in the redistribution of material inside of ice, which has important environmental and composite materials implications [44–48]. Moreover, surface properties are central to the fact that extremophile organisms in Earth’s cryosphere–glaciers, sea ice and permafrost–develop strategies to persist in challenging environments. Indeed, many biological organisms secrete exopolymeric substance (EPS) [49] or harness antifreeze glycoproteins (AFP) [50, 51] to maintain interfacial liquidity. For example, sea ice houses an array of algae and bacteria, some of which produce EPS to protect them at low temperature and high salinity [52, 53]. Additionally, the enhanced liquidity associated with high concentrations of EPS alters the physical properties of sea ice and thereby play a role in climate change [54, 55].
In bulk solution, active particles act as simple microscopic models for living systems and are particularly accurate at mimicking the propulsion of bacteria or algae [56–60]. By converting energy to motion using biological, chemical, or physical processes, they exhibit rich collective emergent motion from ostensibly simple rules [61, 62]. Algae and bacteria operate in complex geometries and translate environmental conditions into microscopic information that guides their behavior. Examples of such information include quorum sensing (e.g., particle population density), used by bacteria to regulate biofilm formation, defense against competitors and adapt to changing environments [63–65]; chemotaxis (e.g., concentration gradients of nutrients), used by algae/bacteria to direct their motion toward higher concentrations of beneficial, or lower concentrations of toxic, chemicals [66–70]. It is important to emphasize that factors such as surface adhesion, salinity, the segregation of impurities of all types from the ice lattice, among other factors [67, 69, 71, 72], make our treatment of chemotaxis a simplified starting point. However, field samples and laboratory experiments have shown that cell motility is influenced by chemotaxis at low temperature [40, 73, 74]. Thus, although there are many complicated interactions that provide scope for future work, the basic role of chemotaxis in the distribution of biota in ice must start with a self-consistent framework, which is the focus of our work.
The confluence of thermal regelation, bio-enhanced premelting and intrinsic mobility underlie our study. Indeed, intrinsic mobility and chemotaxis may compete with thermal regelation, which constitutes a new area of research–ice bound active particles in premelting ice, as illustrated in Figure 1. Moreover, including micro-organism protection mechanisms that enhance interfacial liquidity, such as the secretion of EPS, constitute a unique class of regelation phenomena. Finally, treating this corpus of processes quantitatively is particularly relevant for climatology and the global carbon cycle [75, 76].
FIGURE 1

Schematic of few active particles embedded in ice under an external temperature gradient ∇T along the -axis. The nutrient source is shown by the purple gradient. The external temperature gradient induces a drift velocity, and particles move toward regions of higher temperature, in a process known as thermal regelation (black arrow). An additional drift velocity is associated with particle motion towards higher concentration of nutrients (black dotted arrow). Thus, depending on a particle’s position, and the background temperature and nutrient gradients, these two drift effects can compete or amplify each other.
Our framework is the active Ornstein-Uhlenbeck particle (AOUP) [77–83]. The active force is governed by an Ornstein-Uhlenbeck process with magnitude , which is the active diffusivity. This force can be compared to a colored noise process [79, 84]. In addition to the active diffusivity, the AOUP is characterized by a time τa, which defines the noise persistence, from which the system switches from a ballistic to a diffusive regime. The active diffusivity and characteristic time τa can be measured experimentally [85–87]. The AOUP has been shown to provide accurate predictions for a range of complex phenomena [78, 80, 81, 88], and is theoretically advantageous due to its Gaussian nature [79]. These issues motivate our use of the AOUP model framework to describe the motion of active particles in ice under an external temperature gradient with a nutrient source. We analyze these particles in three dimensions using a multiple scale expansion to derive the associated Fokker-Planck equation.
The paper is organized as follows. In order to make our treatment reasonably self-contained we note that we are generalizing our previous approach [48, 89], which we recover in the appropriate limit. Thus, in §2 we introduce the active Ornstein-Uhlenbeck model for bio-premelted particles and in §3 we derive the associated Fokker-Planck equation using a multiple scale expansion. We then compare our analytic and numerical solutions after which, in §4, we draw conclusions.
Methods
Thermal regelation is understood as a consequence of the premelted film around a particle, originally treated as inert, that 1) executes diffusive motion in the ice column with diffusivity , where is the identity matrix, and 2) experiences a drift velocity parallel to the temperature gradient [48]. Therefore, regelation biases the motion of an active particle by the drift velocity .
For inert particles with a sufficiently large number of moles of electrolyte impurities per unit area of surface, Ni, the premelted film thickness d ∝ Ni [48, 90]. However, the production of EPS/AFP enhances liquidity at the ice surface by increasing the impurity concentration [9, 54, 72, 91], which we treat here using an enhancement factor as N = nNi, which giveswhere the universal gas constant is Rg, the latent heat of fusion per mole of the solid is qm, the molar density of the liquid is ρl, the undercooling is ΔT = Tm − T with Tm = 273.15K the pure bulk melting temperature and T the temperature of ice.
The velocity and premelting-controlled diffusivity are given byrespectively, where and , with |∇T| the external temperature gradient. The viscosity of the fluid is ν, the particle radius is R and kB is the Boltzmann constant. Here, ρsqm ∼ 334 × 106 J m−3 [48]. The evolution of the particle position and its activity are described by two overdamped Langevin equations.
The first term on the right-hand side of Eq. 4 treats the chemotaxis response, representing the effect of the nutrient source of concentration on the particle dynamics, where βD is the chemotactic strength [92–95], which we treat as a constant determined by the parameters in our system. We note, however, that the transport properties of sea- and glacial-ice depend on their unique phase fraction evolution [96–99], which would clearly influence the effective–porosity dependent βD. In the ideal case, wherein the nutrient source is isotropic and purely diffusive, we havewhere is the nutrient diffusivity. The activity, or self-propulsion, is given by the term in Eq. 4, with the active diffusivity. The latter represents the active fluctuations of the system, such as those originating in particular processes described in Refs. [100–103]. Nutrient sources, such as dissolved silica, oxygen, nitrogen and methane, play a vital role in the life of ice-bound micro-organisms, such as algae and bacteria [104–109]. Here we assume that , consistent with [110–112], and . The function is described by an Ornstein-Uhlenbeck process, with correlations given bywhere τa is the noise persistence as noted above. In the small τa limit, reduces to Gaussian white noise with correlations . In contrast, does not reduce to Gaussian white noise when τa is finite, and Eq. 4 does not reach equilibrium. Hence, τa controls the non-equilibrium properties of the dynamics [79, 80]. Finally, the random fluctuations in Eqs 4, 5 are given by zero mean Gaussian white noise processes and .
The Langevin Eqs 4, 5, allow us to express the probability of finding a particle at the position at a given time through the Fokker-Planck equation, which describes the evolution of the probability density function , with the initial condition . To simplify the notation, we write the conditional probability as and eventually arrive at the following system of coupled equations
Equations 8, 9 describe the space-time evolution of the probability of finding a particle and the concentration of nutrients respectively, akin to those of [77, 79, 94], but including the effects of thermal regelation discussed above. Both equations contain microscopic and macroscopic scales. The regime of interest is the long time behavior, computed by deriving the effective macroscopic dynamics as described next.
Results
Method of Multiple Scales
The macroscopic length characterizing the heat flux is
The particle scale l is such that l ≪ L, and hence their ratio defines a small parameter ϵ
We use the microscopic length l and a characteristic time τ, determined a posteriori, and introduce the following dimensionless variableswhere [113, 114], vac is the characteristic active velocity, u and Dc are the characteristic values of the regelation velocity and the premelting enhanced diffusivity respectively, and Dn and ch are the characteristic values of the diffusivity and nutrient concentration respectively. With these scalings, Eqs 8, 9, becomein which we have the following dimensionless numbers,
We identify four characteristic time scales: , , and , associated with “microscopic” diffusion and advection on the particle scale, l, and “macroscopic” diffusion and advection over the thermal length scale, L. Nutrient and premelting enhanced diffusivity are taken to operate on the same time scale; . The Péclet number represents the ratio of the characteristic time for diffusion to that of advection, and those associated with regelation and activity are Pe and Pa respectively, and can be defined over both length scales,
The temperature gradient across the entire system drives thermal regelation and hence advection dominates on the macroscopic scale, so that , or equivalently, . Whence, , or equivalently, . On the macroscopic scale becomes large, as ϵ tends to zero, and thus we use the macroscopic advection time as our characteristic time, so that Péclet numbers based on L are and those based on l are . In consequence, Eqs 13, 15 become leading to and , as well as and . The system of Fokker-Planck equations, Eqs 13–15, becomes
Now, we let describe the macroscopic length scale, and describe the microscopic time scale, leading to the following stretching of the microscopic scales;
Next, we use a power series ansatz for the state variables,to derive a system of equations at each order in ϵ [115], which for the concentration of nutrients, Eq. 19, areshown to second order. We take the approach described in [116, 117] to solve Eqs 23–25. We integrate by parts over the microscale variables r and use the periodic boundary conditions to obtain the so-called weak formulation [118] of the leading order Eq. 23, the solution of which relies on the following product ansatz
The existence and uniqueness of is ensured using the Lax-Milgram theorem [118], also known as the solvability condition or the Fredholm alternative [116]. Thus, C0 is constant over . The solvability condition for the equation at is
from which we find that c0 is stationary over T, leading to and . Substituting into the Eq. 25 and using the solvability condition, gives nutrient diffusion on the macroscale as
showing that, as expected, the homogenization procedure is consistent with the well-known self-similar behavior of diffusion [119]. The order by order equations for the probability density function described by Eq. 18 are simplified by the observation that C0 and C1 do not depend on r, and C0 only contributes at order , and hence we obtainwhere , with , and .
Finally, as shown in Supplementary Material Section S1, upon substitution of P1 into Eq. 31 and using the solvability condition, we obtain the effective macroscopic dynamics aswhich are the dimensional forms of Eqs 31, 28 respectively. These capture the long time behavior wherein the active force is treated through the effective diffusivity, which is enhanced by thermal regelation, consistent with our previous work [89] and that in active matter systems generally [57, 78, 85].
Equations 32, 33 can be mapped onto the well-known Keller–Segel equations for chemotaxis [93–95, 120], where ρ is the cell density and the sign of βD determines whether a cell is attracted or repelled by the nutrient. Finally, when nutrients are neglected, βD = 0, we recover our previous results [48, 89].Although Eq. 32 has an analytical solution in the large Péclet number limit, which previously allowed us to study the effect of the activity ([48, 89] or Supplementary Material Section S2), here we fix the activity and focus on the competition between thermal regelation and bio-locomotion that require solving Eqs 32, 33 numerically. We show dimensional results because of our specific interest in these processes in ice.
In the absence of nutrients, βD = 0, Figure 2 shows how the distribution of bio-particles parallel to the temperature gradient (the -axis) is influenced by EPS/AFP production, which is modeled as a surface colligative effect. Namely, with Ni = 50μM m−2 and four biological enhancement factors n ∈ {1, 2, 3, 4}. The active diffusivity is and the particle radius is R = 9.0, ×, 10−6 m.
FIGURE 2

Consequences of bio-enhanced premelting in the absence of nutrients (βD = 0). The evolution of the probability density along the -axis, computed from Eq. 32 with Ni = 50μM m−2 and four biological enhancement factors n ∈ {1, 2, 3, 4}, where N = nNi. The probability density is shown at and at time years. The analytic solution (solid lines), (see Supplementary Material Section S2), is compared with the numerical solution (dots) of Eq. 32. The particle radius is R = 9.0, ×, 10−6 m.
Figure 3 shows the evolution of the nutrient concentration along the -axis computed from Eq. 33, at . The nutrients are centered at m at and we use a nutrient diffusivity of m2s−1 [121–124].
FIGURE 3

Evolution of the nutrient concentration (in units of M, or mol m−3) along the -axis, computed from Eq. 33, at . At , the nutrient concentration is centered at m and the nutrient diffusivity is m2s−1.
In order to study the effect of nutrients on bio-locomotion, we fix the interfacial concentration of impurities and vary the chemotaxis strength βD, where nutrients either attract (βD > 0) or repel (βD < 0) the bio-particles. Because we are interested in the situation wherein the effects of chemotaxis compete with regelation, this constrains the magnitude of βD as follows. We ask for what order of magnitude of βD are the typical chemotactic speeds approximately the same as the regelation velocity in Eq. 4. Figure 3 shows the Gaussian solution of the concentration field, with a flux that becomes arbitrarily small at long times, dominated by the algebraic contribution to . For the parameters studied here, the regelation speeds are 10−12 − 10−10m s−1 [48, 89], and hence we capture this same range in , with |βD| = 10−10 m2M−1s−1, which is realized across a large time span wherein varies by several orders of magnitude. This is also reflected in the dimensionless ratio in Eq. 13. Namely, for micron to nm scale premelted films surrounding micron sized particles Dc ranges from about 10−14 − 10−13 m2s−1, and the nutrient concentration over relevant time scales has mean values ranging over 10−3 − 10−2 M. Therefore, ranges from 1 to 100 and hence chemotaxis is on a similar footing to regelation under these circumstances. For all cases considered here we use βD = ±10−10 m2M−1s−1 for attractive/repulsive chemotaxis.
For attractive chemotaxis (βD > 0), we show in Figure 4A the dependence of along the -axis parallel to the temperature gradient and at , with the concentration of nutrients centered at m. For the same conditions in the absence of chemotaxis, the net displacement from low to high temperatures due to regelation is approximately 10 m [89]. We see here the chemo-attractive modulation of during this displacement, which “pulls up” the high temperature (low ) tail towards the lower temperature (large ) but higher concentration regions centered at m. The associated asymmetry depletes/attracts the low temperature regions at larger and concentrates the high temperature regions at smaller , and is reflected in the evolution towards a sigmoidal region transecting the source at m. As the maximum of advects through the source region it first sharpens, due to the chemo-attraction from the source “behind” it at m, and then begins to spread out again because of the decay in the chemotactic gradient in time as seen in Figure 3 and discussed above.
FIGURE 4

Effect of nutrients on the particle dynamics. Evolution of the probability density function along the -axis, at , for two values of the chemotaxis strength βD(A)βD = 10−10 m2M−1s−1 > 0 (attractive) and (B)βD = −10−10 m2M−1s−1 < 0 (repulsive). At the distribution is centered at m. The solution of Eq. 32 is computed using a finite difference method. The particle radius is R = 10−6 m, the concentration of impurities is N = 100μM m−2, the temperature gradient is |∇T| = 0.1K m−1 and the active diffusivity is .
For repulsive chemotaxis (βD < 0), we see in Figure 4B the broad sharpening of the initial distribution in the lower temperature (large ) regions as it regelates/advects into the diffuse repulsive tail of nutrient field to the right of the source region centered at m. However, because the initial high temperature (small ) tail of interacts with the nutrient source region at m, chemo-repulsion quickly drives particles towards high temperature (small ) regions, and is clearly reflected in the creation of a local maximum. This maximum advects towards high temperature with a decaying amplitude and width due to the decay in the chemotactic gradient in time as seen in Figure 3.
In Figure 5, we show the combined effects of EPS/AFP surface enhancement of impurities in the absence of chemotaxis (βD = 0), as shown in Figure 2, and the influence of chemotaxis on particle dynamics for fixed surface impurities, as shown in Figure 4. As we vary the surface concentration of impurities we observe the same basic features as described in Figures 2, 4 and hence the same physical description applies in their interpretation. Namely, regardless of whether chemo-attraction or chemo-repulsion is operative, if the interfacial concentration of impurities N is sufficiently large then the interfacial film thicknesses are sufficiently thick that thermal regelation dominates the evolution of . As the interfacial concentration of impurities N decreases chemotaxis exerts more control on the distribution, and the basic dynamics are the same as described in Figure 4. Because the magnitude of βD is fixed, and the characteristic concentration ch is 10−2 M, this N-dependence is simply assessed as discussed above, in terms of the dimensionless ratio in Eq. 13. Namely, the numerator is fixed, but as N increases so too is the film thickness d through Eq. 1, and since Dc ∝ d3 [47], then decreases as N−3, and the balance between chemotaxis control of the distribution gives way to regelation control. The corpus of effects studied here are reflected in this basic balance and shown in Figures 2, 4, 5.
FIGURE 5

The combined effects of the surface concentration of impurities and nutrients. The probability density function along the -axis, at and at years, for (A) attractive (βD = 10−10 m2M−1s−1) and (B) repulsive (βD = −10−10 m2M−1s−1) chemotaxis, for different surface concentration of impurities N, computed from Eqs 32, 33 using a finite difference method. The particle radius is R = 10−6 m, the temperature gradient is |∇T| = 0.1K m−1 and the active diffusivity is . The nutrient source is centered at = 55 m.
Conclusion
Micro-organisms in ice exhibit complex processes to persist and evolve in their harsh environments. They have developed different survival strategies, such as producing exopolymeric substances or antifreeze glycoproteins, and directing their motion toward nutrients or away from waste [34, 69, 125, 126]. We have modeled such micro-organisms using active Ornstein-Uhlenbeck particles subject to thermal regelation and biolocomotion in three dimensions. Firstly, we used a multi-scale expansion to derive the relevant coupled Fokker-Planck and diffusion Eqs 32, 33. Secondly, when nutrients are neglected, and the chemotactic strength βD = 0, we model the bio-production of surface chemicals, such as exopolymeric substances or antifreeze glycoproteins, as a surface colligative effect, and find that the associated bio-enhanced thermal regelation can dominate the distribution of particles in ice. Consistent with previous results [89], in a large Péclet number limit analytical solutions for the particle distributions are possible, and are consistent with the numerical solutions as shown in Figure 2. Thirdly, we studied the competition between thermal regelation and biolocomotion, as function of the chemotaxis strength βD, the interplay between which is shown in Figures 4, 5. The relative importance of chemo-attraction and chemo-repulsion to thermal regelation is captured by the dimensionless ratio . When this ratio is large we find a complex modulation of regelation by chemotaxis, and when small, due to increased surface impurity concentration, leads to regelation dominated redistribution of particles. We note, however, that we have not treated the process wherein nutrients themselves have a colligative effect, which would introduce a particularly complex spatio-temporal dynamics.
Finally, we describe settings to which our analysis is applicable. It is of general interest to understand how particles in ice migrate in response to environmental forcing, as they are used as proxy to infer past climate [14, 127, 128]. Moreover, bioparticles in ice migrate in response to environmental forcing, and micro-organisms play an important role in climate change [129–131]. For example, an increase in temperature activates algae/bacteria trapped in ice, producing chemicals that increase their mobility [131]. Indeed, an increase in algae/bacteria decreases the albedo of the ice [132–134], thereby enhancing melting. Finally, understanding the distribution and viability of bioparticles in partially frozen media on Earth [135, 136] is essential in astrobiology [41, 42, 137].
Statements
Data availability statement
The original contribution presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the authors.
Author contributions
JW conceived the project. JV implemented the theory and performed simulations. JW and JV interpreted the data and wrote the paper. All authors contributed to the discussions and the final version of the manuscript.
Funding
This work was supported by the Swedish Research Council grant no. 638-2013-9243. Nordita is partially supported by Nordforsk.
Acknowledgments
We thank Matthias Geilhufe, Navaneeth Marath and István Mátá Szécsényi for helpful conversations.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fphy.2022.904836/full#supplementary-material
References
1.
KarlDMBirdDFBjörkmanKHoulihanTShackelfordRTupasL. Microorganisms in the Accreted Ice of Lake Vostok, Antarctica. Science (1999) 286:2144–7. 10.1126/science.286.5447.2144
2.
ChristnerBCMosley-ThompsonEThompsonLGReeveJN. Isolation of Bacteria and 16s rDNAs from Lake Vostok Accretion Ice. Environ Microbiol (2001) 3:570–7. 10.1046/j.1462-2920.2001.00226.x
3.
AnesioAMMindlBLaybourn-ParryJHodsonAJSattlerB. Viral Dynamics in Cryoconite Holes on a High Arctic Glacier (Svalbard). J Geophys Res Biogeo (2007) 112:1–10. 10.1029/2006jg000350
4.
BellasCMAnesioAMBarkerG. Analysis of Virus Genomes from Glacial Environments Reveals Novel Virus Groups with Unusual Host Interactions. Front Microbiol (2015) 6:656. 10.3389/fmicb.2015.00656
5.
HeilmannSSneppenKKrishnaS. Coexistence of Phage and Bacteria on the Boundary of Self-Organized Refuges. Proc Natl Acad Sci U.S.A (2012) 109:12828–33. 10.1073/pnas.1200771109
6.
ZhongZPTianFRouxSGazitúaMCSolonenkoNELiYFet alGlacier Ice Archives Nearly 15,000-Year-Old Microbes and Phages. Microbiome (2021) 9:160–23. 10.1186/s40168-021-01106-w
7.
YauSLauroFMDeMaereMZBrownMVThomasTRafteryMJet alVirophage Control of Antarctic Algal Host-Virus Dynamics. Proc Natl Acad Sci U.S.A (2011) 108:6163–8. 10.1073/pnas.1018221108
8.
DoyleSMChristnerBC. Variation in Bacterial Composition, Diversity, and Activity Across Different Subglacial Basal Ice Types. The Cryosphere Discussions (2022) 2022:1–29. 10.5194/tc-2022-68
9.
AnesioAMLutzSChrismasNAMBenningLG. The Microbiome of Glaciers and Ice Sheets. NPJ Biofilms Microbiomes (2017) 3:10–1. 10.1038/s41522-017-0019-0
10.
RoyerADe AngelisMPetitJRA. A 30000 Year Record of Physical and Optical Properties of Microparticles from an East Antarctic Ice Core and Implications for Paleoclimate Reconstruction Models. Climatic Change (1983) 5:381–412. 10.1007/BF00140802
11.
LegrandMMayewskiP. Glaciochemistry of Polar Ice Cores: A Review. Rev Geophys (1997) 35:219–43. 10.1029/96rg03527
12.
StaufferBFlückigerJWolffEBarnesP. The EPICA Deep Ice Cores: First Results and Perspectives. Ann Glaciol (2004) 39:93–100. 10.3189/172756404781814500
13.
AlleyRB. Reliability of Ice-Core Science: Historical Insights. J Glaciol (2010) 56:1095–103. 10.3189/002214311796406130
14.
ThomasCIonescuDArizteguiDTeamDS. Impact of Paleoclimate on the Distribution of Microbial Communities in the Subsurface Sediment of the Dead Sea. Geobiology (2015) 13:546–61. 10.1111/gbi.12151
15.
TetznerDThomasERAllenCSWolffEW. A Refined Method to Analyze Insoluble Particulate Matter in Ice Cores, and its Application to Diatom Sampling in the Antarctic Peninsula. Front Earth Sci (2021) 9:20. 10.3389/feart.2021.617043
16.
PapinaTBlyakharchukTEichlerAMalyginaNMitrofanovaESchwikowskiM. Biological Proxies Recorded in a Belukha Ice Core, Russian Altai. Clim Past (2013) 9:2399–411. 10.5194/cp-9-2399-2013
17.
MaoGJiMXuBLiuYJiaoN. Variation of High (HNA) and Low (LNA) Nucleic Acid-Content Bacteria in Tibetan Ice Cores and Their Relationship to Black Carbon. Front Microbiol (2022) 299. 10.3389/fmicb.2022.844432
18.
AchbergerAMBroxTISkidmoreMLChristnerBC. Expression and Partial Characterization of an Ice Binding Protein from a Bacterium Isolated at a Depth of 3,519 Meters in the Vostok Ice Core, Antarctica. Front Microbiol (2011) 2:255. 10.3389/fmicb.2011.00255
19.
KnowltonCVeerapaneniRD'EliaTRogersS. Microbial Analyses of Ancient Ice Core Sections from Greenland and Antarctica. Biology (2013) 2:206–32. 10.3390/biology2010206
20.
Garcia-LopezEMorenoABartoloméMLeundaMSanchoCCidC. Glacial Ice Age Shapes Microbiome Composition in a Receding Southern European Glacier. Front Microbiol (2021) 12:714537. 10.3389/fmicb.2021.714537
21.
WilhelmLSingerGAFaschingCBattinTJBesemerK. Microbial Biodiversity in Glacier-Fed Streams. ISME J (2013) 7:1651–60. 10.1038/ismej.2013.44
22.
Garcia-LopezEMorenoABartoloméMLeunda EsnaolaMSanchoCCidC. Glacial Ice Age Shapes Microbiome Composition in a Receding Southern European Glacier. Front Mar Sci (2021) 12. 10.3389/fmicb.2021.714537
23.
StibalMSchostagMCameronKAHansenLHChandlerDMWadhamJLet alDifferent Bulk and Active Bacterial Communities in Cryoconite from the Margin and interior of the Greenland Ice Sheet. Environ Microbiol Rep (2015) 7:293–300. 10.1111/1758-2229.12246
24.
HopHVihtakariMBluhmBAAssmyPPoulinMGradingerRet alChanges in Sea-Ice Protist Diversity with Declining Sea Ice in the Arctic Ocean from the 1980s to 2010s. Front Mar Sci (2020) 7:243. 10.3389/fmars.2020.00243
25.
KaukoHMOlsenLMDuartePPeekenIGranskogMAJohnsenGet alAlgal Colonization of Young Arctic Sea Ice in spring. Front Mar Sci (2018) 5:199. 10.3389/fmars.2018.00199
26.
SpillingKOlliKLehtorantaJKrempATedescoLTamelanderTet alShifting Diatom-Dinoflagellate Dominance during Spring Bloom in the Baltic Sea and its Potential Effects on Biogeochemical Cycling. Front Mar Sci (2018) 5:327. 10.3389/fmars.2018.00327
27.
ItcusCPascuMDLavinPPerşoiuAIancuLPurcareaC. Bacterial and Archaeal Community Structures in Perennial Cave Ice. Sci Rep (2018) 8:15671–14. 10.1038/s41598-018-34106-2
28.
MiyataMRobinsonRCUyedaTQPFukumoriYFukushimaSi.HarutaSet alTree of Motility - A Proposed History of Motility Systems in the Tree of Life. Genes Cells (2020) 25:6–21. 10.1111/gtc.12737
29.
HahnkeRLMeier-KolthoffJPGarcía-LópezMMukherjeeSHuntemannMIvanovaNNet alGenome-based Taxonomic Classification of Bacteroidetes. Front Microbiol (2016) 7:2003. 10.3389/fmicb.2016.02003
30.
HillNAHäderD-P. A Biased Random Walk Model for the Trajectories of Swimming Micro-organisms. J Theor Biol (1997) 186:503–26. 10.1006/jtbi.1997.0421
31.
TsagkariESloanW. The Role of the Motility of Methylobacterium in Bacterial Interactions in Drinking Water. Water (2018) 10:1386. 10.3390/w10101386
32.
DoergesLKutscheraU. Assembly and Loss of the Polar Flagellum in Plant-Associated Methylobacteria. Naturwissenschaften (2014) 101:339–46. 10.1007/s00114-014-1162-6
33.
SvenssonFNorbergJSnoeijsP. Diatom Cell Size, Coloniality and Motility: Trade-Offs between Temperature, Salinity and Nutrient Supply with Climate Change. PloS One (2014) 9:e109993. 10.1371/journal.pone.0109993
34.
AumackCFJuhlARKrembsC. Diatom Vertical Migration within Land-Fast Arctic Sea Ice. J Mar Syst (2014) 139:496–504. 10.1016/j.jmarsys.2014.08.013
35.
ChristnerBMosley-ThompsonEThompsonLGZagorodnovVSandmanKReeveJN. Recovery and Identification of Viable Bacteria Immured in Glacial Ice. Icarus (2000) 144:479–85. 10.1006/icar.1999.6288
36.
BiswasRKChoudhuryAK. Diatoms: Miniscule Biological Entities with Immense Importance in Synthesis of Targeted Novel Bioparticles and Biomonitoring. J Biosci (2021) 46:1–14. 10.1007/s12038-021-00222-x
37.
DongHJiangHYuBLiuXZhangCChanM. Impacts of Environmental Change and Human Activity on Microbial Ecosystems on the Tibetan Plateau, NW China. GSAT (2010) 20:4–10. 10.1130/gsatg75a.1
38.
Delgado-BaquerizoMBissettAEldridgeDJMaestreFTHeJ-ZWangJ-Tet alPalaeoclimate Explains a Unique Proportion of the Global Variation in Soil Bacterial Communities. Nat Ecol Evol (2017) 1:1339–47. 10.1038/s41559-017-0259-7
39.
BenningfieldD. The Bumpy Search for Liquid Water at the South Pole of Mars. EOS (2022) 103:1–6. 10.1029/2022EO220126
40.
LindensmithCARiderSBedrossianMWallaceJKSerabynEShowalterGMet alA Submersible, off-axis Holographic Microscope for Detection of Microbial Motility and Morphology in Aqueous and Icy Environments. PloS one (2016) 11:e0147700. 10.1371/journal.pone.0147700
41.
NadeauJLindensmithCDemingJWFernandezVIStockerR. Microbial Morphology and Motility as Biosignatures for Outer Planet Missions. Astrobiology (2016) 16:755–74. 10.1089/ast.2015.1376
42.
JonesRMGoordialJMOrcuttBN. Low Energy Subsurface Environments as Extraterrestrial Analogs. Front Microbiol (2018) 9:1605. 10.3389/fmicb.2018.01605
43.
Schreder-GomesSIBenisonKCBernauJA. 830-million-year-old Microorganisms in Primary Fluid Inclusions in Halite. Geology (2022). (in press). 10.1130/G49957.1
44.
DashJGRempelAWWettlauferJS. The Physics of Premelted Ice and its Geophysical Consequences. Rev Mod Phys (2006) 78:695. 10.1103/RevModPhys.78.695
45.
RempelAWWettlauferJSWorsterMG. Interfacial Premelting and the Thermomolecular Force: Thermodynamic Buoyancy. Phys Rev Lett (2001) 87:088501. 10.1103/PhysRevLett.87.088501
46.
WettlauferJSWorsterMG. Premelting Dynamics. Annu Rev Fluid Mech (2006) 38:427–52. 10.1146/annurev.fluid.37.061903.175758
47.
PeppinSSLSpannuthMJWettlauferJS. Onsager Reciprocity in Premelting Solids. J Stat Phys (2009) 134:701–8. 10.1007/s10955-009-9699-z
48.
MarathNKWettlauferJS. Impurity Effects in thermal Regelation. Soft Matter (2020) 16:5886–91. 10.1039/d0sm00558d
49.
WingenderJNeuTRFlemmingH-C. What Are Bacterial Extracellular Polymeric Substances? In: Microbial Extracellular Polymeric Substances. Berlin, Heidelberg: Springer (1999). p. 1–19. 10.1007/978-3-642-60147-7_1
50.
BangJKLeeJHMuruganRNLeeSGDoHKohHYet alAntifreeze Peptides and Glycopeptides, and Their Derivatives: Potential Uses in Biotechnology. Mar Drugs (2013) 11:2013–41. 10.3390/md11062013
51.
EskandariALeowTCRahmanMBAOslanSN. Antifreeze Proteins and Their Practical Utilization in Industry, Medicine, and Agriculture. Biomolecules (2020) 10:1649. 10.3390/biom10121649
52.
EwertMDemingJW. Bacterial Responses to Fluctuations and Extremes in Temperature and Brine Salinity at the Surface of Arctic winter Sea Ice. FEMS Microbiol Ecol (2014) 89:476–89. 10.1111/1574-6941.12363
53.
EwertMDemingJW. Sea Ice Microorganisms: Environmental Constraints and Extracellular Responses. Biology (Basel) (2013) 2:603–28. 10.3390/biology2020603
54.
KrembsCEickenHDemingJW. Exopolymer Alteration of Physical Properties of Sea Ice and Implications for Ice Habitability and Biogeochemistry in a Warmer Arctic. Proc Natl Acad Sci U.S.A (2011) 108:3653–8. 10.1073/pnas.1100701108
55.
DechoAWGutierrezT. Microbial Extracellular Polymeric Substances (EPSs) in Ocean Systems. Front Microbiol (2017) 8:922. 10.3389/fmicb.2017.00922
56.
CatesME. Diffusive Transport without Detailed Balance in Motile Bacteria: Does Microbiology Need Statistical Physics?Rep Prog Phys (2012) 75:042601. 10.1088/0034-4885/75/4/042601
57.
BechingerCDi LeonardoRLöwenHReichhardtCVolpeGVolpeG. Active Particles in Complex and Crowded Environments. Rev Mod Phys (2016) 88:045006. 10.1103/revmodphys.88.045006
58.
GhoshAFischerP. Controlled Propulsion of Artificial Magnetic Nanostructured Propellers. Nano Lett (2009) 9:2243–5. 10.1021/nl900186w
59.
KimSQiuFKimSGhanbariAMoonCZhangLet alFabrication and Characterization of Magnetic Microrobots for Three‐Dimensional Cell Culture and Targeted Transportation. Adv Mater (2013) 25:5863–8. 10.1002/adma.201301484
60.
JinCVachierJBandyopadhyaySMacharashviliTMaassCC. Fine Balance of Chemotactic and Hydrodynamic Torques: When Microswimmers Orbit a Pillar Just once. Phys Rev E (2019) 100:040601. 10.1103/PhysRevE.100.040601
61.
ElgetiJWinklerRGGompperG. Physics of Microswimmers-Single Particle Motion and Collective Behavior: A Review. Rep Prog Phys (2015) 78:056601. 10.1088/0034-4885/78/5/056601
62.
RomanczukPBärMEbelingWLindnerBSchimansky-GeierL. Active Brownian Particles. Eur Phys J Spec Top (2012) 202:1–162. 10.1140/epjst/e2012-01529-y
63.
LiY-HTianX. Quorum sensing and Bacterial Social Interactions in Biofilms. Sensors (2012) 12:2519–38. 10.3390/s120302519
64.
YanSWuG. Can Biofilm Be Reversed through Quorum Sensing in Pseudomonas aeruginosa?Front Microbiol (2019) 10:1582. 10.3389/fmicb.2019.01582
65.
LeeCKVachierJde AndaJZhaoKBakerAEBennettRRet alSocial Cooperativity of Bacteria during Reversible Surface Attachment in Young Biofilms: A Quantitative Comparison of Pseudomonas aeruginosa PA14 and PAO1. MBio (2020) 11:e02644–19. 10.1128/mBio.02644-19
66.
WadhamsGHArmitageJP. Making Sense of it All: Bacterial Chemotaxis. Nat Rev Mol Cel Biol (2004) 5:1024–37. 10.1038/nrm1524
67.
ShowalterGMDemingJW. Low-temperature Chemotaxis, Halotaxis and Chemohalotaxis by the Psychrophilic marine Bacterium Colwellia Psychrerythraea 34h. Environ Microbiol Rep (2018) 10:92–101. 10.1111/1758-2229.12610
68.
CremerJHondaTTangYWong-NgJVergassolaMHwaT. Chemotaxis as a Navigation Strategy to Boost Range Expansion. Nature (2019) 575:658–63. 10.1038/s41586-019-1733-y
69.
Bar DolevMBernheimRGuoSDaviesPLBraslavskyI. Putting Life on Ice: Bacteria that Bind to Frozen Water. J R Soc Interf (2016) 13:20160210. 10.1098/rsif.2016.0210
70.
MattinglyHKaminoKMachtaBEmonetT. Escherichia coli Chemotaxis is Information Limited. Nat Phys (2021) 17:1–6. 10.1038/s41567-021-01380-3
71.
Bar-DolevMCelikYWettlauferJSDaviesPLBraslavskyI. New Insights into Ice Growth and Melting Modifications by Antifreeze Proteins. J R Soc Interf (2012) 9:3249–59. 10.1098/rsif.2012.0388
72.
Hansen-GoosHThomsonESWettlauferJS. On the Edge of Habitability and the Extremes of Liquidity. Planet Space Sci (2014) 98:169–81. 10.1016/j.pss.2013.04.010
73.
JungeKEickenHDemingJW. Motility of Colwellia Psychrerythraea Strain 34H at Subzero Temperatures. Appl Environ Microbiol (2003) 69:4282–4. 10.1128/aem.69.7.4282-4284.2003
74.
MudgeMCNunnBLFirthEEwertMHalesKFondrieWEet alSubzero, saline Incubations of Colwellia Psychrerythraea Reveal Strategies and Biomarkers for Sustained Life in Extreme Icy Environments. Environ Microbiol (2021) 23:3840–66. 10.1111/1462-2920.15485
75.
WadhamJLHawkingsJRTarasovLGregoireLJSpencerRGMGutjahrMet alIce Sheets Matter for the Global Carbon Cycle. Nat Commun (2019) 10:3567–17. 10.1038/s41467-019-11394-4
76.
HollandATWilliamsonCJSgouridisFTedstoneAJMcCutcheonJCookJMet alDissolved Organic Nutrients Dominate Melting Surface Ice of the Dark Zone (Greenland Ice Sheet). Biogeosciences (2019) 16:3283–96. 10.5194/bg-16-3283-2019
77.
FodorÉNardiniCCatesMETailleurJViscoPvan WijlandF. How Far from Equilibrium is Active Matter?Phys Rev Lett (2016) 117:038103. 10.1103/PhysRevLett.117.038103
78.
CapriniLMarini Bettolo MarconiU. Active Particles under Confinement and Effective Force Generation Among Surfaces. Soft Matter (2018) 14:9044–54. 10.1039/c8sm01840e
79.
MartinDO'ByrneJCatesMEFodorÉNardiniCTailleurJet alStatistical Mechanics of Active Ornstein-Uhlenbeck Particles. Phys Rev E (2021) 103:032607. 10.1103/PhysRevE.103.032607
80.
DabelowLEichhornR. Irreversibility in Active Matter: General Framework for Active Ornstein-Uhlenbeck Particles. Front Phys (2021) 8:516. 10.3389/fphy.2020.582992
81.
CapriniLMarini Bettolo MarconiUPuglisiA. Activity Induced Delocalization and Freezing in Self-Propelled Systems. Sci Rep (2019) 9:1386–9. 10.1038/s41598-018-36824-z
82.
BonillaLL. Active Ornstein-Uhlenbeck Particles. Phys Rev E (2019) 100:022601. 10.1103/PhysRevE.100.022601
83.
DabelowLBoSEichhornR. Irreversibility in Active Matter Systems: Fluctuation Theorem and Mutual Information. Phys Rev X (2019) 9:021009. 10.1103/physrevx.9.021009
84.
SevillaFJRodríguezRFGomez-SolanoJR. Generalized Ornstein-Uhlenbeck Model for Active Motion. Phys Rev E (2019) 100:032123. 10.1103/PhysRevE.100.032123
85.
MaggiCPaoluzziMPellicciottaNLeporeAAngelaniLDi LeonardoR. Generalized Energy Equipartition in Harmonic Oscillators Driven by Active Baths. Phys Rev Lett (2014) 113:238303. 10.1103/physrevlett.113.238303
86.
MaggiCPaoluzziMAngelaniLDi LeonardoR. Memory-less Response and Violation of the Fluctuation-Dissipation Theorem in Colloids Suspended in an Active bath. Sci Rep (2017) 7:17588–7. 10.1038/s41598-017-17900-2
87.
DonadoFMoctezumaRELópez-FloresLMedina-NoyolaMArauz-LaraJL. Brownian Motion in Non-equilibrium Systems and the Ornstein-Uhlenbeck Stochastic Process. Sci Rep (2017) 7:12614–7. 10.1038/s41598-017-12737-1
88.
Marini Bettolo MarconiUMaggiCMelchionnaS. Pressure and Surface Tension of an Active Simple Liquid: A Comparison between Kinetic, Mechanical and Free-Energy Based Approaches. Soft Matter (2016) 12:5727–38. 10.1039/c6sm00667a
89.
VachierJWettlauferJS. Premelting Controlled Active Matter in Ice. Phys Rev E (2022) 105:024601. 10.1103/PhysRevE.105.024601
90.
WettlauferJS. Impurity Effects in the Premelting of Ice. Phys Rev Lett (1999) 82:2516–9. 10.1103/physrevlett.82.2516
91.
EwertMDemingJ. Sea Ice Microorganisms: Environmental Constraints and Extracellular Responses. Biology (2013) 2:603–28. 10.3390/biology2020603
92.
KellerEFSegelLA. Model for Chemotaxis. J Theor Biol (1971) 30:225–34. 10.1016/0022-5193(71)90050-6
93.
SahaSGolestanianRRamaswamyS. Clusters, Asters, and Collective Oscillations in Chemotactic Colloids. Phys Rev E Stat Nonlin Soft Matter Phys (2014) 89:062316. 10.1103/PhysRevE.89.062316
94.
LiebchenBLöwenH. Synthetic Chemotaxis and Collective Behavior in Active Matter. Acc Chem Res (2018) 51:2982–90. 10.1021/acs.accounts.8b00215
95.
PohlOStarkH. Dynamic Clustering and Chemotactic Collapse of Self-Phoretic Active Particles. Phys Rev Lett (2014) 112:238303. 10.1103/physrevlett.112.238303
96.
WettlauferJSWorsterMGHuppertHE. Natural Convection during Solidification of an alloy from above with Application to the Evolution of Sea Ice. J Fluid Mech (1997) 344:291–316. 10.1017/s0022112097006022
97.
RempelAWWaddingtonEDWettlauferJSWorsterMG. Possible Displacement of the Climate Signal in Ancient Ice by Premelting and Anomalous Diffusion. Nature (2001) 411:568–71. 10.1038/35079043
98.
RempelAWWettlauferJSWaddingtonED. Anomalous Diffusion of Multiple Impurity Species: Predicted Implications for the Ice Core Climate Records. J Geophys Res Solid Earth (2002) 107:ECV 3–1–ECV 3–12. 10.1029/2002jb001857
99.
WellsAJWettlauferJSOrszagSA. Maximal Potential Energy Transport: A Variational Principle for Solidification Problems. Phys Rev Lett (2010) 105:254502. 10.1103/physrevlett.105.254502
100.
JoannyJ-FJülicherFProstJ. Motion of an Adhesive Gel in a Swelling Gradient: A Mechanism for Cell Locomotion. Phys Rev Lett (2003) 90:168102. 10.1103/physrevlett.90.168102
101.
PeruaniFMorelliLG. Self-propelled Particles with Fluctuating Speed and Direction of Motion in Two Dimensions. Phys Rev Lett (2007) 99:010602. 10.1103/PhysRevLett.99.010602
102.
RomanczukPSchimansky-GeierL. Brownian Motion with Active Fluctuations. Phys Rev Lett (2011) 106:230601. 10.1103/physrevlett.106.230601
103.
VandebroekHVanderzandeC. The Effect of Active Fluctuations on the Dynamics of Particles, Motors and DNA-Hairpins. Soft Matter (2017) 13:2181–91. 10.1039/c6sm02568d
104.
PricePB. A Habitat for Psychrophiles in Deep Antarctic Ice. Proc Natl Acad Sci U.S.A (2000) 97:1247–51. 10.1073/pnas.97.3.1247
105.
CampenRKSowersTAlleyRB. Evidence of Microbial Consortia Metabolizing within a Low-Latitude Mountain Glacier. Geol (2003) 31:231–4. 10.1130/0091-7613(2003)031<0231:eomcmw>2.0.co;2
106.
TungHCPricePBBramallNEVrdoljakG. Microorganisms Metabolizing on clay Grains in 3-Km-Deep Greenland Basal Ice. Astrobiology (2006) 6:69–86. 10.1089/ast.2006.6.69
107.
MaderHMPettittMEWadhamJLWolffEWParkesRJ. Subsurface Ice as a Microbial Habitat. Geol (2006) 34:169–72. 10.1130/g22096.1
108.
RohdeRAPricePB. Diffusion-controlled Metabolism for Long-Term Survival of Single Isolated Microorganisms Trapped within Ice Crystals. Proc Natl Acad Sci U.S.A (2007) 104:16592–7. 10.1073/pnas.0708183104
109.
VancoppenolleMGoosseHDe MontetyAFichefetTTremblayBTisonJL. Modeling Brine and Nutrient Dynamics in Antarctic Sea Ice: The Case of Dissolved Silica. J Geophys Res Oceans (2010) 115:1–18. 10.1029/2009jc005369
110.
WuMRobertsJWKimSKochDLDeLisaMP. Collective Bacterial Dynamics Revealed Using a Three-Dimensional Population-Scale Defocused Particle Tracking Technique. Appl Environ Microbiol (2006) 72:4987–94. 10.1128/aem.00158-06
111.
Ben AmarM. Collective Chemotaxis and Segregation of Active Bacterial Colonies. Sci Rep (2016) 6:21269–9. 10.1038/srep21269
112.
WåhlinJKlein-PasteA. The Effect of Mass Diffusion on the Rate of Chemical Ice Melting Using Aqueous Solutions. Cold Regions Sci Techn (2017) 139:11–21. 10.1016/j.coldregions.2017.04.001
113.
DabelowLBoSEichhornR. How Irreversible Are Steady-State Trajectories of a Trapped Active Particle?J Stat Mech Theor E. (2021) 2021:033216. 10.1088/1742-5468/abe6fd
114.
CapriniLMarconiUMBWittmannRLöwenH. Dynamics of Active Particles with Space-dependent Swim Velocity. Soft Matter (2022) 18:1412–22. 10.1039/d1sm01648b
115.
BenderCMOrszagSA. Advanced Mathematical Methods for Scientists and Engineers: Asymptotic Methods and Perturbation Theory. New York, NY: Springer (2013).
116.
PavliotisGStuartA. Multiscale Methods: Averaging and Homogenization. New York, NY: Springer (2008).
117.
AurellEBoSDiasMEichhornRMarinoR. Diffusion of a Brownian Ellipsoid in a Force Field. EPL (2016) 114:30005. 10.1209/0295-5075/114/30005
118.
ChipotM. Weak Formulation of Elliptic Problems. In: Elliptic Equations: An Introductory Course. Basel: Birkhäuser, Basel (2009). p. 35–42. 10.1007/978-3-7643-9982-5_3
119.
BarenblattGI. Scaling, Self-Similarity, and Intermediate Asymptotics. Cambridge, UK: Cambridge University Press (1996).
120.
LiebchenBLöwenH. Modeling Chemotaxis of Microswimmers: From Individual to Collective Behavior. In: Chemical Kinetics: Beyond the Textbook. New Jersey: World Scientific (2020). p. 493–516.
121.
TheurkauffICottin-BizonneCPalacciJYbertCBocquetL. Dynamic Clustering in Active Colloidal Suspensions with Chemical Signaling. Phys Rev Lett (2012) 108:268303. 10.1103/physrevlett.108.268303
122.
JinCKrügerCMaassCC. Chemotaxis and Autochemotaxis of Self-Propelling Droplet Swimmers. Proc Natl Acad Sci U.S.A (2017) 114:5089–94. 10.1073/pnas.1619783114
123.
SalekMMCarraraFFernandezVGuastoJSStockerR. Bacterial Chemotaxis in a Microfluidic T-Maze Reveals strong Phenotypic Heterogeneity in Chemotactic Sensitivity. Nat Commun (2019) 10:1877–11. 10.1038/s41467-019-09521-2
124.
HokmabadBVAgudo-CanalejoJSahaSGolestanianRMaassCC. Chemotactic Self-Caging in Active Emulsions (2022) 119 (24):e2122269119. 10.1073/pnas.2122269119
125.
PricePB. Microbial Life in Glacial Ice and Implications for a Cold Origin of Life. FEMS Microbiol Ecol (2007) 59:217–31. 10.1111/j.1574-6941.2006.00234.x
126.
StockerRSeymourJR. Ecology and Physics of Bacterial Chemotaxis in the Ocean. Microbiol Mol Biol Rev (2012) 76:792–812. 10.1128/mmbr.00029-12
127.
MitevaV. Bacteria in Snow and Glacier Ice. In: Psychrophiles: From Biodiversity to Biotechnology. Berlin, Heidelberg: Springer (2008). p. 31–50. 10.1007/978-3-540-74335-4_3
128.
HanDNamSIKimJHSteinRNiessenFJoeYJet alInference on Paleoclimate Change Using Microbial Habitat Preference in Arctic Holocene Sediments. Sci Rep (2017) 7:9652–11. 10.1038/s41598-017-08757-6
129.
MitchellJGKogureK. Bacterial Motility: Links to the Environment and a Driving Force for Microbial Physics. FEMS Microbiol Ecol (2006) 55:3–16. 10.1111/j.1574-6941.2005.00003.x
130.
DuttaHDuttaA. The Microbial Aspect of Climate Change. Energ Ecol Environ (2016) 1:209–32. 10.1007/s40974-016-0034-7
131.
CavicchioliRRippleWJTimmisKNAzamFBakkenLRBaylisMet alScientists' Warning to Humanity: Microorganisms and Climate Change. Nat Rev Microbiol (2019) 17:569–86. 10.1038/s41579-019-0222-5
132.
RyanJCHubbardAStibalMIrvine-FynnTDCookJSmithLCet alDark Zone of the Greenland Ice Sheet Controlled by Distributed Biologically-Active Impurities. Nat Commun (2018) 9:1065–10. 10.1038/s41467-018-03353-2
133.
PeriniLGostinčarCAnesioAMWilliamsonCTranterMGunde-CimermanN. Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated with Algal Bloom. Front Microbiol (2019) 10:557. 10.3389/fmicb.2019.00557
134.
WilliamsonCJCookJTedstoneAYallopMMcCutcheonJPonieckaEet alAlgal Photophysiology Drives Darkening and Melt of the Greenland Ice Sheet. Proc Natl Acad Sci U.S.A (2020) 117:5694–705. 10.1073/pnas.1918412117
135.
Van LeeuweMATedescoLArrigoKRAssmyPCampbellKMeinersKMet alMicroalgal Community Structure and Primary Production in Arctic and Antarctic Sea Ice: A Synthesis. Element Sci Anthropocene (2018) 6:1–25. 10.1525/elementa.267
136.
CimoliELucieerVMeinersKMChennuACastrisiosKRyanKGet alMapping the In Situ Microspatial Distribution of Ice Algal Biomass through Hyperspectral Imaging of Sea-Ice Cores. Sci Rep (2020) 10:21848–17. 10.1038/s41598-020-79084-6
137.
WettlauferJS. Sea Ice and Astrobiology. In: ThomasDDieckmannG, editors. Sea Ice. 2nd ed.Oxford: Wiley-Blackwell (2010). p. 579–94. chap. 15.
138.
RiskenH. Fokker-Planck Equation. In: The Fokker-Planck Equation. Berlin, Heidelberg: Springer (1996). p. 63–95. 10.1007/978-3-642-61544-3_4
139.
CelaniAVergassolaM. Bacterial Strategies for Chemotaxis Response. Proc Natl Acad Sci U.S.A (2010) 107:1391–6. 10.1073/pnas.0909673107
140.
KheifetsS. Application of the Green’s Function Method to Some Nonlinear Problems of an Electron Storage Ring: Part 1, the Green’s Function for the Fokker-Planck Equation. Technical Report. Menlo Park, CA (USA): Stanford Linear Accelerator Center (1982).
Summary
Keywords
bioparticles, premelting, biolocomotion, active matter, Ornstein-Uhlenbeck process, extremophiles
Citation
Vachier J and Wettlaufer JS (2022) Biolocomotion and Premelting in Ice. Front. Phys. 10:904836. doi: 10.3389/fphy.2022.904836
Received
25 March 2022
Accepted
03 June 2022
Published
01 July 2022
Volume
10 - 2022
Edited by
Sujit Datta, Princeton University, United States
Reviewed by
Jay Nadeau, Portland State University, United States
Yuan-Nan Young, New Jersey Institute of Technology, United States
Updates
Copyright
© 2022 Vachier and Wettlaufer .
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Jérémy Vachier , jeremy.vachier@su.se, John S. Wettlaufer , john.wettlaufer@yale.edu
This article was submitted to Biophysics, a section of the journal Frontiers in Physics
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