Frontiers in Genetics | Genomics of Plants and the Phytoecosystem

Original Research

Published on 05 Jan 2026

Protein kinase Pi65 regulates rice blast resistance through phosphorylation-dependent signaling and metabolic reprogramming

in Genomics of Plants and the Phytoecosystem

Lili Wang
Hongwei Chen
Xiaohang Zhou
Bowen Yan
Zhiqiang Tang
Zuobin Ma
Dianrong Ma
Wenjing Zheng

Frontiers in Genetics

doi 10.3389/fgene.2025.1715247

278 views

Original Research

Accepted on 17 Dec 2025

Time-series transcriptomic analysis of flower tissue during heat stress in heat-resilient and heat-sensitive Brassica napus L

in Genomics of Plants and the Phytoecosystem

Xiaojie Hu
Sheng Chen
Xiaoke Ping
Kadambot H.M. Siddique
Wallace Andrew Cowling

Frontiers in Genetics

163 views

Original Research

Accepted on 12 Dec 2025

Genomics-informed elucidation of trait phenotype and MABB approaches deliver major gene resistance in aromatic rice landrace Mushk Budji

in Genomics of Plants and the Phytoecosystem

Asif Bashir Shikari
Raheel Shafeeq Khan
Noor ul Ain
FAYAZ MOHIDDIN
Gazala Hassan Khan
Najeebul Rehman Sofi
Dr Zahoor Ahmed Dar
M. Ashraf Ahangar
Gowhar Ali
AFLAQ HAMID WANI

Frontiers in Genetics

193 views

Editorial

Published on 24 Nov 2025

Editorial: Responses and adaptation of plants to abiotic stress: genetics, evolution and molecular insights

in Genomics of Plants and the Phytoecosystem

Yang Tao
Xilan Yang
Zhiqiang Wang

Frontiers in Genetics

doi 10.3389/fgene.2025.1729869

1,053 views

Editorial

Published on 17 Nov 2025

Editorial: Precision trait mapping and molecular breeding in high-impact crop plants

in Genomics of Plants and the Phytoecosystem

Dinesh Kumar Saini
Mamta Gupta
Alla Singh
Mehak Sethi
Veena Devi
Reyazul Rouf Mir

Frontiers in Genetics

doi 10.3389/fgene.2025.1736266

1,680 views

Correction

Published on 12 Nov 2025

Correction: Drought adaptation index (DAI) based on BLUP as a selection approach for drought-resilient switchgrass germplasm

in Genomics of Plants and the Phytoecosystem

Shiva Om Makaju
Hari Bahadur Chhetri
Chanaka Roshan Abeyratne
Mirko Pavicic
Hari Poudel
Jazib Ali Irfan
Anita Giabardo
Katrien M. Devos
Daniel Jacobson
Ali Mekki Missaoui

Frontiers in Genetics

doi 10.3389/fgene.2025.1731825

620 views

Original Research

Published on 10 Nov 2025

Integrated metagenomics and metabolomics analysis reveals dynamic changes of microbiota and metabolic profile during fermentation of cigar tobacco (Nicotiana tabacum L.) leaves

in Genomics of Plants and the Phytoecosystem

Ting Yang
Xiaolu Lin
Rui Chen
Ruiqi Wang
Tong Li
Fulong Shen
Xiaowei Zhang
Lianghua Lai
Bing Lu
Jiliang Wei

Frontiers in Genetics

doi 10.3389/fgene.2025.1662815

1,353 views
1 citation

Data Report

Published on 28 Oct 2025

De novo assembly and functional annotation of Henbit (Lamium amplexicaule) transcriptome

in Genomics of Plants and the Phytoecosystem

Young Ji Choi
Hyojung Son
Jaewon Lim
Siyoon Jeong
Seongmin Oh
Bomi Nam
Kang-Yeol Yu
Kyung Min Choi
Myunghee Jung
Ha Yeun Song

Frontiers in Genetics

doi 10.3389/fgene.2025.1612607

2,551 views

Correction

Published on 24 Oct 2025

Correction: Genome-wide association study of drought tolerance traits in sugar beet germplasms at the seedling stage

in Genomics of Plants and the Phytoecosystem

Wangsheng Li
Ming Lin
Jiajia Li
Dali Liu
Wenbo Tan
Xilong Yin
Yan Zhai
Yuanhang Zhou
Wang Xing

Frontiers in Genetics

doi 10.3389/fgene.2025.1685028

777 views

Review

Published on 06 Oct 2025

Harnessing multi-omics approaches to combat Karnal bunt of wheat: a review of advances and future prospects

in Genomics of Plants and the Phytoecosystem

Renu Sharma
Satish Kumar
C. N Mishra
O. P. Ahlawat
Ratan Tiwari

Frontiers in Genetics

doi 10.3389/fgene.2025.1687301

2,390 views

Original Research

Published on 01 Oct 2025

Comprehensive genetic diversity revealed in the pre-breeding RILs (O. sativa × O. rufipogon) with enhanced yield and pigmented grain quality

in Genomics of Plants and the Phytoecosystem

Subhas Chandra Roy
Pankaj Shil

Frontiers in Genetics

doi 10.3389/fgene.2025.1659937

2,771 views

Editorial

Published on 30 Sep 2025

Editorial: Genetic dissection and improvement of crop quality and stress adaptation

in Genomics of Plants and the Phytoecosystem

Liwei Zheng
Hangkai Zhang
Songwen Zhang
Yingpeng Hua
Lihu Wang

Frontiers in Genetics

doi 10.3389/fgene.2025.1694599

2,735 views

Original Research

Published on 26 Sep 2025

ZmEXPB7, a β-expansin gene, contributes to drought tolerance in Arabidopsis

in Genomics of Plants and the Phytoecosystem

Jing Xiong
Xianqiu Wang
Xueling Ye
Changying Liu
Jialiang Han

Frontiers in Genetics

doi 10.3389/fgene.2025.1688658

3,385 views

Original Research

Accepted on 17 Sep 2025

Chloroplast Genomic Diversity in eleven Pennisetum Species

in Genomics of Plants and the Phytoecosystem

He Muhan
Qi Wang
Yuwen Zhang
Chunjuan Shi

Frontiers in Genetics

1,326 views

Original Research

Published on 17 Sep 2025

Genomic prediction powered by multi-omics data

in Genomics of Plants and the Phytoecosystem

Osval A. Montesinos-López
Abelardo Montesinos-López
Brandon Alejandro Mosqueda-González
Iván Delgado-Enciso
Moises Chavira-Flores
José Crossa
Susanne Dreisigacker
Jin Sun
Rodomiro Ortiz

Frontiers in Genetics

doi 10.3389/fgene.2025.1636438

3,771 views
3 citations

Brief Research Report

Published on 29 Aug 2025

Codon usage bias analysis of the WRKY gene family in Musa acuminata

in Genomics of Plants and the Phytoecosystem

Jiaman Sun
Ji Zhang
Jinzhong Zhang
Brett J. Ferguson
Andrew Chen

Frontiers in Genetics

doi 10.3389/fgene.2025.1647037

2,236 views

Original Research

Published on 25 Aug 2025

Drought adaptation index (DAI) based on BLUP as a selection approach for drought-resilient switchgrass germplasm

in Genomics of Plants and the Phytoecosystem

Shiva Om Makaju
Hari Bahadur Chhetri
Chanaka Roshan Abeyratne
Mirko Pavicic
Hari Poudel
Jazib Ali Irfan
Anita Giabardo
Katrien M. Devos
Daniel Jacobson
Ali Mekki Missaoui

Frontiers in Genetics

doi 10.3389/fgene.2025.1626083

3,392 views
1 citation

Editorial

Published on 19 Aug 2025

Editorial: Genome-wide identification of functional markers to enhance molecular breeding efforts in agriculturally important, underutilized, and less explored plant species

in Genomics of Plants and the Phytoecosystem

Rajni Parmar
Sapna Thakur
Ram Kumar Sharma

Frontiers in Genetics

doi 10.3389/fgene.2025.1627482

1,844 views

Original Research

Published on 14 Aug 2025

Genetic basis of phenotypic diversity in C. stenophylla: a stepping stone for climate-adapted coffee cultivar development

in Genomics of Plants and the Phytoecosystem

Paul M. Lahai
Peter O. Aikpokpodion
Alieu Mohamed Bah
Mohamed T. Lahai
Lyndel W. Meinhardt
Seunghyun Lim
Ezekiel Ahn
Dapeng Zhang
Sunchung Park

Frontiers in Genetics

doi 10.3389/fgene.2025.1554029

3,013 views

Review

Published on 11 Aug 2025

Enhancing quality and climate resilient traits in vegetatively propagated polyploids: transgenic and genome editing advancements, challenges and future directions

in Genomics of Plants and the Phytoecosystem

Surya Krishna Sakthivel
Amaranatha Reddy Vennapusa
Kalpalatha Melmaiee

Frontiers in Genetics

doi 10.3389/fgene.2025.1599242

3,173 views
2 citations

Original Research

Published on 29 Jul 2025

Evaluation and genome-wide association study of saline–alkali tolerance in high-latitude rice resource populations

in Genomics of Plants and the Phytoecosystem

Rongsheng Wang
Tan Lv
Jingpeng Li
Juntao Ma
Yongli Wang
Lingwei Deng
Wan Li
Jun Zhang
Kun Li
Wei Zhang

Frontiers in Genetics

doi 10.3389/fgene.2025.1617034

1,635 views

Original Research

Published on 24 Jul 2025

Mechanism of nodulation and nitrogen fixation in Caucasian clover (Trifolium ambiguum Bieb.) based on transcriptomics and proteomics analyses

in Genomics of Plants and the Phytoecosystem

Jiawei Liu
Xinyan Hao
Yue Guo
Mingjiu Wang
Fan Huang

Frontiers in Genetics

doi 10.3389/fgene.2025.1600377

1,641 views
1 citation

Original Research

Published on 23 Jul 2025

The chloroplast genome of the Peltigera elisabethae photobiont Chloroidium sp. W5 and its phylogenetic implications

in Genomics of Plants and the Phytoecosystem

Guldiyar Adil
Shenglei Liu
Xiaoyan Bao
Reyim Mamut

Frontiers in Genetics

doi 10.3389/fgene.2025.1602048

1,665 views
1 citation

Original Research

Published on 15 Jul 2025

Mitochondrial genome complexity in Erodium stephanianum (Geraniaceae): nanopore sequencing reveals chloroplast gene transfer and DNA rearrangements

in Genomics of Plants and the Phytoecosystem

Xinchen Xu
Qingfei Meng
Na Li
Zichuan Zou
Haonan Yang
Ang Li
Fusheng Ge
Jian Meng
Zixue Ding

Frontiers in Genetics

doi 10.3389/fgene.2025.1641368

2,431 views

904 articles

articles

Protein kinase Pi65 regulates rice blast resistance through phosphorylation-dependent signaling and metabolic reprogramming

Time-series transcriptomic analysis of flower tissue during heat stress in heat-resilient and heat-sensitive Brassica napus L

Genomics-informed elucidation of trait phenotype and MABB approaches deliver major gene resistance in aromatic rice landrace Mushk Budji

Editorial: Responses and adaptation of plants to abiotic stress: genetics, evolution and molecular insights

Editorial: Precision trait mapping and molecular breeding in high-impact crop plants

Correction: Drought adaptation index (DAI) based on BLUP as a selection approach for drought-resilient switchgrass germplasm

Integrated metagenomics and metabolomics analysis reveals dynamic changes of microbiota and metabolic profile during fermentation of cigar tobacco (Nicotiana tabacum L.) leaves

De novo assembly and functional annotation of Henbit (Lamium amplexicaule) transcriptome

Correction: Genome-wide association study of drought tolerance traits in sugar beet germplasms at the seedling stage

Harnessing multi-omics approaches to combat Karnal bunt of wheat: a review of advances and future prospects

Comprehensive genetic diversity revealed in the pre-breeding RILs (O. sativa × O. rufipogon) with enhanced yield and pigmented grain quality

Editorial: Genetic dissection and improvement of crop quality and stress adaptation

ZmEXPB7, a β-expansin gene, contributes to drought tolerance in Arabidopsis

Chloroplast Genomic Diversity in eleven Pennisetum Species

Genomic prediction powered by multi-omics data

Codon usage bias analysis of the WRKY gene family in Musa acuminata

Drought adaptation index (DAI) based on BLUP as a selection approach for drought-resilient switchgrass germplasm

Editorial: Genome-wide identification of functional markers to enhance molecular breeding efforts in agriculturally important, underutilized, and less explored plant species

Genetic basis of phenotypic diversity in C. stenophylla: a stepping stone for climate-adapted coffee cultivar development

Enhancing quality and climate resilient traits in vegetatively propagated polyploids: transgenic and genome editing advancements, challenges and future directions

Evaluation and genome-wide association study of saline–alkali tolerance in high-latitude rice resource populations

Mechanism of nodulation and nitrogen fixation in Caucasian clover (Trifolium ambiguum Bieb.) based on transcriptomics and proteomics analyses

The chloroplast genome of the Peltigera elisabethae photobiont Chloroidium sp. W5 and its phylogenetic implications

Mitochondrial genome complexity in Erodium stephanianum (Geraniaceae): nanopore sequencing reveals chloroplast gene transfer and DNA rearrangements