Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 01 Apr 2025

Comparative genomic and phenotypic description of Escherichia ruysiae: a newly identified member of the gut microbiome of the domestic dog

in Systems Microbiology

Niokhor Dione
Kodjovi D. Mlaga
Siyi Liang
Guillaume Jospin
Zara Marfori
Nancy Alvarado
Elisa Scarsella
Ruchita Uttarwar
Holly H. Ganz

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1558802

794 views

Original Research

Published on 28 Mar 2025

A species-level identification pipeline for human gut microbiota based on the V3-V4 regions of 16S rRNA

in Systems Microbiology

Min Wang
Tingting Yuan
Jiali Chen
Jing Yang
Ji Pu
Wenchao Lin
Kui Dong
Luqing Zhang
Jiale Yuan
Han Zheng

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1553124

849 views

Original Research

Published on 27 Mar 2025

Dry ginger and Schisandra chinensis modulate intestinal flora and bile acid metabolism to treatment asthma

in Systems Microbiology

Yantong Yu
Shuang Geng
Chao Bu
Gang Cao
Yanquan Han
Dongmei Xie
Yan Hong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1541335

1,254 views

Original Research

Accepted on 26 Mar 2025

Diversity in the Composition of Pleural Cavity and Oral Cavity Microbiota in Different Bacterial Empyema

in Systems Microbiology

Yun Huang
Qing-Hua Gao
Chen-Jian Liu
Ting Su
Jie Liu
Zheng-Yi Liang
Zheng-Ju zhao
Li-Ping Chen
Yong-Ning Yi
Xiao-Ran Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1566606

141 views

Original Research

Published on 26 Mar 2025

Gene network centrality analysis identifies key regulators coordinating day-night metabolic transitions in Synechococcus elongatus PCC 7942 despite limited accuracy in predicting direct regulator-gene interactions

in Systems Microbiology

Zachary Johnson
David Anderson
Margaret S. Cheung
Pavlo Bohutskyi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1569559

734 views

Original Research

Published on 21 Mar 2025

FACdb: a comprehensive resource for genes, gut microbiota, and metabolites in farm animals

in Systems Microbiology

Ze Zhang
Yang Li
Di Zhang
Shuai Chen
Sien Lu
Kang Wang
Miao Zhou
Zehe Song
Qingcui Li
Jie Yin

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1557285

2,368 views

Original Research

Published on 20 Mar 2025

A proposed workflow to robustly analyze bacterial transcripts in RNAseq data from extracellular vesicles

in Systems Microbiology

Alex M. Ascensión
Miriam Gorostidi-Aicua
Ane Otaegui-Chivite
Ainhoa Alberro
Rocio del Carmen Bravo-Miana
Tamara Castillo-Trivino
Laura Moles
David Otaegui

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1486661

977 views
1 citation

Original Research

Published on 19 Mar 2025

The research on the identification, taxonomy, and comparative genomics analysis of nine Bacillus velezensis strains significantly contributes to microbiology, genetics, bioinformatics, and biotechnology

in Systems Microbiology

Eduarda Guimarães Sousa
Gabriela Munis Campos
Marcus Vinícius Canário Viana
Gabriel Camargos Gomes
Diego Lucas Neres Rodrigues
Flavia Figueira Aburjaile
Belchiolina Beatriz Fonseca
Max Roberto Batista de Araújo
Mateus Matiuzzi da Costa
Eric Guedon

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1544934

1,455 views

Original Research

Published on 19 Mar 2025

A comprehensive strategy for the development of a multi-epitope vaccine targeting Treponema pallidum, utilizing heat shock proteins, encompassing the entire process from vaccine design to in vitro evaluation of immunogenicity

in Systems Microbiology

Jing Jiang
Linglan Xu
Xuefeng Wang
Ming Wang
Youde Cao
Ranhui Li
Kang Zheng
Xian Wu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1551437

812 views

Original Research

Published on 17 Mar 2025

Microbiomic insights into the unique effects of vaginal microbiota on preterm birth in Chinese pregnant women

in Systems Microbiology

Jun Zhang
Zhimin Xu
Mengjun Zhang
Jiaoning Fang
Yijing Zheng
Caihong Jiang
Mian Pan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1560528

646 views

Correction

Published on 12 Mar 2025

Corrigendum: Probiotic effects on skin health: comprehensive visual analysis and perspectives

in Systems Microbiology

Kexin Deng
Xiaofei Fan
Zhigen Yuan
Dian Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1583612

371 views

Review

Published on 10 Mar 2025

Research status of the relationship between microecological imbalance and lung cancer

in Systems Microbiology

Xin Jin
Yangang Gu
Xiaojie Song

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1558379

802 views

Original Research

Published on 06 Mar 2025

Investigation of the effect of anti-PIA/PNAG antibodies on biofilm formation in Escherichia coli

in Systems Microbiology

Mina Shirmohammadpour
Mohammad Reza Mehrasbi
Nader Noshiranzadeh
Davoud Afshar
Kamyar Mansori
Bahman Mirzaei

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1552670

842 views

Original Research

Published on 05 Mar 2025

HPV integration profiling using nanopore sequencing and association with cervical precancerous lesion

in Systems Microbiology

Ying Hou
Shoufeng Ni
Xin Liu
Xingyu Liu
Nan Wang
Fuqiang Xu
Jianyong Gao
Yanmei Li
Yuxiang Zhou
Huadong Tang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1522550

849 views

Original Research

Published on 04 Mar 2025

Synergistic removal of emerging contaminants using bacterial augmented floating treatment bed system (FTBs) of Typha latifolia and Canna indica for rejuvenation of polluted river water

in Systems Microbiology

Vandan Patel
Shruti Sharma
Chirayu Desai
Bhavtosh Kikani
Datta Madamwar

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1512992

740 views

Original Research

Published on 03 Mar 2025

New entomopathogenic species in the Clavicipitaceae family (Hypocreales, Ascomycota) from the subtropical forests of Fujian, China

in Systems Microbiology

Longbing Lin
Yongsheng Lin
Nemat O. Keyhani
Huili Pu
Jiao Yang
Chengjie Xiong
Junya Shang
Yuchen Mao
Lixia Yang
Minghai Zheng

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1532341

853 views