Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 27 May 2025

Genomic insights into Kocuria: taxonomic revision and identification of five IAA-producing extremophiles

in Systems Microbiology

Cong-Jian Li
Zhu-Ming Jiang
Xiao-Yang Zhi
Hua-Hong Chen
Li-Yan Yu
Guang-Fu Li
Yu-Qin Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1547983

3,301 views
5 citations

Review

Published on 27 May 2025

Current status and trends in the study of intestinal flora in cognitive disorders: a bibliometric and visual analysis

in Systems Microbiology

Qi Zhang
Zhenmei Gao
Yunqing Deng
Xiangqing Xu
Wenyu Sun
Rui Liu
Tianao Zhang
Xilei Sun

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1577597

4,577 views

Original Research

Published on 20 May 2025

Comparative evaluation of sequencing technologies and primer sets for mouse gut microbiota profiling

in Systems Microbiology

Aleksandra Strokach
Polina Zoruk
Daria Boldyreva
Maxim Morozov
Evgenii Olekhnovich
Vladimir Veselovsky
Vladislav Babenko
Oksana Selezneva
Natalia Zakharevich
Andrey Larin

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1584359

3,852 views
5 citations

Original Research

Published on 14 May 2025

Construction of a predictive model for rebleeding risk in upper gastrointestinal bleeding patients based on clinical indicators such as Helicobacter pylori infection

in Systems Microbiology

Wei Zang
Ze Lin
Yanduo Zhao
Tianshi Jia
Xinglong Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1510126

3,047 views
2 citations

Systematic Review

Published on 14 May 2025

Systematic review of gut microbiota composition, metabolic alterations, and the effects of treatments on PCOS and gut microbiota across human and animal studies

in Systems Microbiology

Aya Hanna
Hassan Abbas
Fayez Yassine
Alia AlBush
Melhem Bilen

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1549499

8,148 views
6 citations

Review

Published on 09 May 2025

Relationship between pediatric asthma and respiratory microbiota, intestinal microbiota: a narrative review

in Systems Microbiology

Lian Liu
Wenqi Zhao
Han Zhang
Yunxiao Shang
Wanjie Huang
Qi Cheng

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1550783

4,679 views
4 citations

Original Research

Published on 09 May 2025

Root zone microbial communities of Artemisia ordosica Krasch. at different successional stages in Mu US Sandy Land: a metagenomic perspective with culturomics insights

in Systems Microbiology

Wen Zhu
Shuo Han
Yao Cheng
Zhihong Yu
Guozhu Zhao
Xiangwei He

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1585700

2,996 views
1 citation

Original Research

Published on 09 May 2025

Genome-wide expression in human whole blood for diagnosis of latent tuberculosis infection: a multicohort research

in Systems Microbiology

Fan Jiang
Yanhua Liu
Linsheng Li
Ruizi Ni
Yajing An
Yufeng Li
Lingxia Zhang
Wenping Gong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1584360

3,841 views
5 citations

Original Research

Published on 09 May 2025

Discovery of two new Cortinarius species in Southern China

in Systems Microbiology

Yuxiao Dang
Mengjia Zhu
Nemat O. Keyhani
Ziyi Wu
Chenghao Qiu
Jinming Xiong
Huili Pu
Longbing Lin
Chengjie Xiong
Zhiying Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1558935

4,165 views

Systematic Review

Published on 08 May 2025

Bibliometric analysis of the S24-7 family and its association with health

in Systems Microbiology

Fangmei Gao
Fenfen Wang
Dandan Wang
Guankui Du
Fangfang Gao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1571883

2,806 views
3 citations

Original Research

Published on 02 May 2025

Unveiling the impact of 16S rRNA gene intergenomic variation on primer design and gut microbiome profiling

in Systems Microbiology

Sirinthorn Sunthornthummas
Rujipat Wasitthankasem
Pimonwan Phokhaphan
Nirinya Sudtachat
Alisa Wilantho
Chumpol Ngamphiw
Wanwisa Chareanchim
Sissades Tongsima

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1573920

6,122 views

Original Research

Published on 29 Apr 2025

Diversity in the composition of pleural cavity and oral cavity microbiota in different bacterial empyema

in Systems Microbiology

Yun Huang
Qing-Hua Gao
Chen-Jian Liu
Ting Su
Jie Liu
Zheng-Yi Liang
Zheng-Ju Zhao
Li-Ping Chen
Yong-Ning Yi
Xiao-Ran Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1566606

1,774 views

Original Research

Published on 22 Apr 2025

Urinary and oral microbiota in Polish women: a pilot case-control study of breast cancer

in Systems Microbiology

Anna Marciniak
Marzena Skrzypczak-Zielińska
Oliwia Zakerska-Banaszak
Elżbieta Nowakowska
Anna Kozaczka
Brunon Zemła
Andrzej Szpak
Dariusz Godlewski
Jadwiga Charzewska
Dorothy R. Pathak

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1538224

2,448 views

Opinion

Published on 10 Apr 2025

Navigating microbiome variability: implications for research, diagnostics, and direct-to-consumer testing

in Systems Microbiology

Lorenzo Drago

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1580531

2,523 views

Original Research

Published on 09 Apr 2025

Gut microbiome signature in response to neoadjuvant chemoradiotherapy in patients with rectal cancer

in Systems Microbiology

Tingmei Duan
Zhengting Ren
Haili Jiang
Yan Ding
Hongyan Wang
Fan Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1543507

2,485 views
3 citations

Systematic Review

Published on 08 Apr 2025

Gut microbiota and gastrointestinal tumors: insights from a bibliometric analysis

in Systems Microbiology

Chaofan Chen
Xiaolan Wang
Xu Han
Lifan Peng
Zhiyun Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1558490

2,795 views

Original Research

Published on 01 Apr 2025

Identifying phage Lysins through genomic analysis of prophages from Acinetobacter baumannii

in Systems Microbiology

Maria Leonor Raposo
Ana Carolina Pimentel
Vera Manageiro
Aida Duarte
Manuela Caniça
Filipa F. Vale

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1532950

3,550 views
2 citations

Original Research

Published on 01 Apr 2025

Comparative genomic and phenotypic description of Escherichia ruysiae: a newly identified member of the gut microbiome of the domestic dog

in Systems Microbiology

Niokhor Dione
Kodjovi D. Mlaga
Siyi Liang
Guillaume Jospin
Zara Marfori
Nancy Alvarado
Elisa Scarsella
Ruchita Uttarwar
Holly H. Ganz

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1558802

2,311 views
4 citations

Original Research

Published on 28 Mar 2025

A species-level identification pipeline for human gut microbiota based on the V3-V4 regions of 16S rRNA

in Systems Microbiology

Min Wang
Tingting Yuan
Jiali Chen
Jing Yang
Ji Pu
Wenchao Lin
Kui Dong
Luqing Zhang
Jiale Yuan
Han Zheng

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1553124

8,461 views
7 citations

Original Research

Published on 27 Mar 2025

Dry ginger and Schisandra chinensis modulate intestinal flora and bile acid metabolism to treatment asthma

in Systems Microbiology

Yantong Yu
Shuang Geng
Chao Bu
Gang Cao
Yanquan Han
Dongmei Xie
Yan Hong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1541335

4,672 views
1 citation

Original Research

Published on 26 Mar 2025

Gene network centrality analysis identifies key regulators coordinating day-night metabolic transitions in Synechococcus elongatus PCC 7942 despite limited accuracy in predicting direct regulator-gene interactions

in Systems Microbiology

Zachary Johnson
David Anderson
Margaret S. Cheung
Pavlo Bohutskyi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1569559

3,363 views
5 citations

Original Research

Published on 21 Mar 2025

FACdb: a comprehensive resource for genes, gut microbiota, and metabolites in farm animals

in Systems Microbiology

Ze Zhang
Yang Li
Di Zhang
Shuai Chen
Sien Lu
Kang Wang
Miao Zhou
Zehe Song
Qingcui Li
Jie Yin

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1557285

4,675 views
1 citation

Original Research

Published on 20 Mar 2025

A proposed workflow to robustly analyze bacterial transcripts in RNAseq data from extracellular vesicles

in Systems Microbiology

Alex M. Ascensión
Miriam Gorostidi-Aicua
Ane Otaegui-Chivite
Ainhoa Alberro
Rocio del Carmen Bravo-Miana
Tamara Castillo-Trivino
Laura Moles
David Otaegui

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1486661

2,942 views
1 citation

Original Research

Published on 19 Mar 2025

The research on the identification, taxonomy, and comparative genomics analysis of nine Bacillus velezensis strains significantly contributes to microbiology, genetics, bioinformatics, and biotechnology

in Systems Microbiology

Eduarda Guimarães Sousa
Gabriela Munis Campos
Marcus Vinícius Canário Viana
Gabriel Camargos Gomes
Diego Lucas Neres Rodrigues
Flavia Figueira Aburjaile
Belchiolina Beatriz Fonseca
Max Roberto Batista de Araújo
Mateus Matiuzzi da Costa
Eric Guedon

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1544934

6,030 views
5 citations

1,789 articles

articles

Genomic insights into Kocuria: taxonomic revision and identification of five IAA-producing extremophiles

Current status and trends in the study of intestinal flora in cognitive disorders: a bibliometric and visual analysis

Comparative evaluation of sequencing technologies and primer sets for mouse gut microbiota profiling

Construction of a predictive model for rebleeding risk in upper gastrointestinal bleeding patients based on clinical indicators such as Helicobacter pylori infection

Systematic review of gut microbiota composition, metabolic alterations, and the effects of treatments on PCOS and gut microbiota across human and animal studies

Relationship between pediatric asthma and respiratory microbiota, intestinal microbiota: a narrative review

Root zone microbial communities of Artemisia ordosica Krasch. at different successional stages in Mu US Sandy Land: a metagenomic perspective with culturomics insights

Genome-wide expression in human whole blood for diagnosis of latent tuberculosis infection: a multicohort research

Discovery of two new Cortinarius species in Southern China

Bibliometric analysis of the S24-7 family and its association with health

Unveiling the impact of 16S rRNA gene intergenomic variation on primer design and gut microbiome profiling

Diversity in the composition of pleural cavity and oral cavity microbiota in different bacterial empyema

Urinary and oral microbiota in Polish women: a pilot case-control study of breast cancer

Navigating microbiome variability: implications for research, diagnostics, and direct-to-consumer testing

Gut microbiome signature in response to neoadjuvant chemoradiotherapy in patients with rectal cancer

Gut microbiota and gastrointestinal tumors: insights from a bibliometric analysis

Identifying phage Lysins through genomic analysis of prophages from Acinetobacter baumannii

Comparative genomic and phenotypic description of Escherichia ruysiae: a newly identified member of the gut microbiome of the domestic dog

A species-level identification pipeline for human gut microbiota based on the V3-V4 regions of 16S rRNA

Dry ginger and Schisandra chinensis modulate intestinal flora and bile acid metabolism to treatment asthma

Gene network centrality analysis identifies key regulators coordinating day-night metabolic transitions in Synechococcus elongatus PCC 7942 despite limited accuracy in predicting direct regulator-gene interactions

FACdb: a comprehensive resource for genes, gut microbiota, and metabolites in farm animals

A proposed workflow to robustly analyze bacterial transcripts in RNAseq data from extracellular vesicles

The research on the identification, taxonomy, and comparative genomics analysis of nine Bacillus velezensis strains significantly contributes to microbiology, genetics, bioinformatics, and biotechnology