Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 27 Jan 2025

Machine learning models reveal microbial signatures in healthy human tissues, challenging the sterility of human organs

in Systems Microbiology

Anargyros Skoulakis
Giorgos Skoufos
Armen Ovsepian
Artemis G. Hatzigeorgiou

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1512304

1,727 views

Original Research

Published on 24 Jan 2025

Unveiling early-life microbial colonization profile through characterizing low-biomass maternal-infant microbiomes by 2bRAD-M

in Systems Microbiology

Shuwen Hou
Yuesong Jiang
Feng Zhang
Tianfan Cheng
Dan Zhao
Jilong Yao
Ping Wen
Lijian Jin
Shi Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1521108

1,808 views

Original Research

Published on 23 Jan 2025

The clinical prediction model to distinguish between colonization and infection by Klebsiella pneumoniae

in Systems Microbiology

Xiaoyu Zhang
Xifan Zhang
Deng Zhang
Jing Xu
Jingping Zhang
Xin Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1508030

2,226 views
1 citation

Review

Published on 22 Jan 2025

Deep learning in microbiome analysis: a comprehensive review of neural network models

in Systems Microbiology

Piotr Przymus
Krzysztof Rykaczewski
Adrián Martín-Segura
Jaak Truu
Enrique Carrillo De Santa Pau
Mikhail Kolev
Irina Naskinova
Aleksandra Gruca
Alexia Sampri
Marcus Frohme

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1516667

6,346 views
1 citation

Original Research

Published on 22 Jan 2025

BANNMDA: a computational model for predicting potential microbe–drug associations based on bilinear attention networks and nuclear norm minimization

in Systems Microbiology

Mingmin Liang
Xianzhi Liu
Juncai Li
Qijia Chen
Bin Zeng
Zhong Wang
Jing Li
Lei Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1497886

1,131 views

Editorial

Published on 16 Jan 2025

Editorial: Emerging technologies for viability enumeration of live microorganisms

in Systems Microbiology

Hanan R. Shehata
Marco Pane
Elna M. Buys
Binu Koshy
Christina S. Vegge
Jean L. Schoeni

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1546438

1,363 views
1 citation

Original Research

Published on 15 Jan 2025

Potential geographical distribution of Cordyceps cicadae and its two hosts in China under climate change

in Systems Microbiology

Junyi Chen
Donglan He

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1519560

1,148 views
1 citation

Editorial

Published on 14 Jan 2025

Editorial: Insights in systems microbiology: 2022/2023

in Systems Microbiology

Qi Zhao
Biswarup Sen
Davida S. Smyth
Fernando Luis Cônsoli

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1538030

1,051 views

Original Research

Published on 09 Jan 2025

16S rRNA sequencing-based evaluation of the protective effects of key gut microbiota on inhaled allergen-induced allergic rhinitis

in Systems Microbiology

Yi Tang
Yongchuan She
Danping Chen
Yibo Zhou
Dan Xie
Zhai Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1497262

1,584 views
1 citation

Systematic Review

Published on 09 Jan 2025

Influential articles in autism and gut microbiota: bibliometric profile and research trends

in Systems Microbiology

Jiangbo Ying
Melvyn Weibin Zhang
Ker-Chiah Wei
Sunny H. Wong
Mythily Subramaniam

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1401597

2,498 views

Systematic Review

Published on 08 Jan 2025

Revolutionizing diagnosis of pulmonary Mycobacterium tuberculosis based on CT: a systematic review of imaging analysis through deep learning

in Systems Microbiology

Fei Zhang
Hui Han
Minglin Li
Tian Tian
Guilei Zhang
Zhenrong Yang
Feng Guo
Maomao Li
Yuting Wang
Jiahe Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1510026

2,974 views
1 citation

Original Research

Published on 07 Jan 2025

Evaluation of 16S rRNA genes sequences and genome-based analysis for identification of non-pathogenic Yersinia

in Systems Microbiology

Angelina A. Kislichkina
Angelika A. Sizova
Yury P. Skryabin
Svetlana V. Dentovskaya
Andrey P. Anisimov

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1519733

1,634 views

Systematic Review

Published on 06 Jan 2025

Gut microbiota and inflammasome-mediated pyroptosis: a bibliometric analysis from 2014 to 2023

in Systems Microbiology

Hang Zhang
Tian Zhao
Juan Gu
Fushan Tang
Lei Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1413490

1,791 views
1 citation

Review

Published on 03 Jan 2025

Advances in multi-omics integrated analysis methods based on the gut microbiome and their applications

in Systems Microbiology

Dongdong Duan
Mingyu Wang
Jinyi Han
Mengyu Li
Zhenyu Wang
Shenping Zhou
Wenshui Xin
Xinjian Li

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1509117

3,360 views
2 citations

Systematic Review

Published on 24 Dec 2024

Meta-analysis of gut microbiota alterations in patients with irritable bowel syndrome

in Systems Microbiology

Xiaxi Li
Xiaoling Li
Haowei Xiao
Jiaying Xu
Jianquan He
Chuanxing Xiao
Bangzhou Zhang
Man Cao
Wenxin Hong

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1492349

2,619 views
1 citation

Review

Published on 24 Dec 2024

Gut microbiota in post-acute COVID-19 syndrome: not the end of the story

in Systems Microbiology

Yaping An
Linlin He
Xin Xu
Meiyu Piao
Bangmao Wang
Tianyu Liu
Hailong Cao

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1500890

3,732 views