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Recent Advances in Fluorescent Probes for Super-Resolution Microscopy

Cover image for Research Topic "Recent Advances in Fluorescent Probes for Super-Resolution Microscopy"
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Editorial11 June 2021
Editorial: Recent Advances in Fluorescent Probes for Super-Resolution Microscopy

Super-resolution microscopy (SRM) has become an indispensable tool for monitoring cytoskeleton dynamics, as well as the imaging, detection, and tracing of functional biomolecules in living cells. It overcomes the barrier of diffraction limit and allows for the visualization of sub-cellular structure down to the sub-10nm level. Several types of SRM techniques are available, with a vast number of applications in interdisciplinary research fields. To date, many fluorescent probes such as fluorescent proteins, organic dyes, nanomaterials, quantum dots, polymer dots, organic dots, carbon dots and upconversion nanomaterials have been employed for SRM. Each has its own limitations, and as such, in order to obtain a better-resolved structure, improving the efficiency of these probes is of great importance.The performance of fluorescent probes in super-resolution microscopy is dependent on several important photo-physical parameters. Organic molecule, with their smaller size, have excellent blinking properties, but are often dim and undergo rapid photobleaching.Photoactivable or photoswitchable fluorescent proteins suffer from poor localization precision due to their low photon counts. Nanomaterials, quantum dots, carbon dots, polymers dots, etc. have shown promising results due to their high brightness and photostability but their large size compared to organic molecule limits their potential applications.In this research topic, we present a collection of original research, mini review, perspective and review articles touching upon different aspects of new fluorescent probe materials that advance the SRM techniques one step ahead to the current state of art in the field. It also provides a new labelling strategy of the fluorescent probe in the live cell SRM imaging. More than 50% of total background light rejection was achieved, providing higher signal to background ratio images of the MCF-10A samples and mouse brains. This photobleaching imprinting technology can be easily adapted to other fluorescence dyes or proteins, which may have application in studies involving relatively large and nontransparent organisms.In this collection, the mini review, perspective and reviews summarizes the detail information In summary, the editors hope that the collection presented in this research topic "Recent Advances in Fluorescent Probes for Super-Resolution Microscopy" will contribute to the progress of research and development activities in the field.

All authors listed have made a substantial, direct and intellectual contribution to the work, and approved it for publication.

CKN thank to the kind support of science and engineering board (SERB) core research grant (CRG) India for the financial support with the project number CRG/2020/000268. The editors are grateful to the authors for submitting their valuable work and to all the reviewers who contributed to this effort by thoroughly evaluating the submitted articles and providing thoughtful advice on how these can be improved.

4,019 views

6 citations

ORIGINAL RESEARCH
30 April 2021
Application of SNAP-Tag in Expansion Super-Resolution Microscopy Using DNA Oligostrands
Longfang Yao, 4 more and Jiong Ma
Application of SNAP-Tag in Expansion Super-Resolution Microscopy Using DNA Oligostrands
Expansion super-resolution technology is a new technology developed in recent years. It anchors the dye on the hydrogel and the dye expands with the expansion of the hydrogel so that a super-resolution map can be obtained under an ordinary microscope. However, by labeling the target protein with a first antibody and secondary antibody, the distance between the fluorescent group and the actual target protein is greatly increased. Although fluorescent proteins can also be used for expansion super-resolution to reduce this effect, the fluorescent protein is often destroyed during sample preparation. To solve this problem, we developed a novel label system for expansion microscopy based on a DNA oligostrand linked with a fluorescent dye, acrylamide group (linker), and benzoylguanine (BG, a small substrate molecule for SNAP-tag). This protocol greatly reduced the error between the position of fluorescent group and the actual target protein and also reduced loss of the fluorescent group during sample preparation.

5,717 views

21 citations

Shedding New Lights Into STED Microscopy: Emerging Nanoprobes for Imaging
REVIEW
20 April 2021
Shedding New Lights Into STED Microscopy: Emerging Nanoprobes for Imaging
Yanfeng Liu, 4 more and Junle Qu
Stimulated emission depletion (STED) microscopy has long been regarded as a powerful tool for real-time super-resolved bio-imaging, since it was firstly reported in 1994. However, high STED light power (101~3 MW/cm2) is often required to achieve significant resolution improvement, which inevitably introduce photo-toxicity and severe photo-bleaching, damaging the imaging quality, especially for long-term cases. Recently, the employment of nano-probes (quantum dots, upconversion nanoparticles, carbon dots, polymer dots, AIE dots, etc) in STED imaging has brought opportunities to overcoming such long-existing issues. These nanomaterials designed for STED imaging show not only lower STED power requirements, but also more efficient photoluminescence (PL) and enhanced photo-stability compared with organic molecular probes. Herein, we review the recent progress in the development of nano-probes for STED imaging, to highlight their potential in improving the long-term imaging quality of STED microscopy and broadening its application scope. We also discuss the pros and cons for specific classes of nano-probes for STED bio-imaging in details, so as to provide practical references for biological researchers seeking for suitable imaging kits, promoting the development of relative research field.

7,715 views

26 citations

ORIGINAL RESEARCH
12 April 2021
Detection and Classification of Multi-Type Cells by Using Confocal Raman Spectroscopy
Jing Wen, 6 more and Zhengqin Gu

4,478 views

18 citations

PERSPECTIVE
15 January 2021
Lanthanide-Doped Upconversion Nanoparticles for Super-Resolution Microscopy
Hao Dong, 1 more and Chun-Hua Yan
Lanthanide-Doped Upconversion Nanoparticles for Super-Resolution Microscopy
Super-resolution microscopy offers a non-invasive and real-time tool for probing the subcellular structures and activities on nanometer precision. Exploring adequate luminescent probes is a great concern for acquiring higher resolution image. Benefiting from the atomic-like transitions among real energy levels, lanthanide-doped upconversion nanoparticles are featured by unique optical properties including excellent photostability, large anti-Stokes shifts, multicolor narrowband emissions, tunable emission lifetimes, etc. The past few years have witnessed the development of upconversion nanoparticles as probes for super-resolution imaging studies. To date, the optimal resolution reached 28 nm (/36) for single nanoparticles and 82 nm (/12) for cytoskeleton structures with upconversion nanoparticles. Compared with conventional probes such as organic dyes and quantum dots, upconversion nanoparticles-related super-resolution microscopy is still in the preliminary stage, and both opportunities and challenges exist. In this perspective article, we summarized the recent advances of upconversion nanoparticles for super-resolution microscopy, and projected the future directions of this emerging field. This perspective article should be enlightening for designing efficient upconversion nanoprobes for super-resolution imaging and promote the development of upconversion nanoprobes for cell biology applications.

7,901 views

47 citations

A Labeling Strategy for Living Specimens in Long-Term/Super-Resolution Fluorescence Imaging
ORIGINAL RESEARCH
15 January 2021
A Labeling Strategy for Living Specimens in Long-Term/Super-Resolution Fluorescence Imaging
Yubing Han, 6 more and Xiang Hao
Despite the urgent needs of imaging living specimens for cutting-edge biological research, most of the existing fluorescent labeling methods suffer from either poor optical properties or complicated operations to realize cell-permeability and specificity. Here, we introduce a method to overcome this tradeoff by incubating living cells and tissues with bright and photostable fluorescent dyes, no matter if they are cell-permeable or not, at particular conditions (concentration and temperature) without physical cell-penetration or chemical modifications. Particularly, using Atto 647N to replace the most-commonly-used red-absorbing SiR dye in live-cell long-term imaging, we obtain 2.5-time enhancement on fluorescence brightness and photostability. These improvements give access to the discovery of a new interaction model between endoplasmic reticulum and mitochondria. These results indicate the great potential of using dyes, which are normally considered “live-cell incompatible”, to capture the morphology and dynamics of subcellular structures in living specimens. Our strategy has expanded the scientist’s toolbox for understanding the dynamics and interactions of subcellular structures in living specimens.

9,734 views

11 citations

ORIGINAL RESEARCH
17 December 2020
Photobleaching Imprinting Enhanced Background Rejection in Line-Scanning Temporal Focusing Microscopy
Chaowei Zhuang, 4 more and Qionghai Dai

2,824 views

3 citations