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Plant Genetics and Genomics

This article is part of the Research Topic

Natural diversity in the new millennium

Editorial ARTICLE

Front. Plant Sci., 29 October 2015 | https://doi.org/10.3389/fpls.2015.00897

Editorial: Natural diversity in the new millennium

  • 1Horticulture Department, Inonu University, Malatya, Turkey
  • 2Eunomia Research and Consulting, Bristol, UK
  • 3Irrigated Agriculture Research and Extension Center (IAREC), Washington State University, Prosser, WA, USA
  • 4Centre de coopération internationale en recherche agronomique pour le développement, Montpellier, France
  • 5Instituto Tecnológico Vale Desenvolvimento Sustentável/Vale Institute of Technology Sustainable Development, Belem, Brazil

Natural diversity is a recurrent theme in everyday life and in research. Thus, the objective of this topic was to highlight progress or novelties that occurred in this new millennium. The topic includes many different fields as can be seen by the variety of the articles. Indeed, subjects covered include variations in strawberry aroma, diversity of protein families, and peculiar ecosystems. However, several themes connect this apparently unrelated set of articles.

Unfortunately, one cannot ignore the issue of biodiversity and loss thereof. The United Nations Climate Change Conference was held in Copenhagen in 2009 to discuss ways of mediating environmental changes. No simple agreement was signed by all participating countries. That, combined with press articles has left a negative feeling. Thus, the general opinion is that the world is divided into two, the Western group environmentally friendly, and the rest of the world environmentally unfriendly. The articles reveal a more complex picture as many countries are trying to combine sustainable industries with economic realities. For instance, the Brazilian government has issued laws to safeguard the peculiar Canga ecosystems while allowing mining (Skirycz et al., 2014). Efforts are underway to produce improved oil palms to spare land (Barcelos et al., 2015). Moreover, many ecological studies can be found in the literature which highlights the international concern for loss of biodiversity. Unfortunately, biodiversity loss also applies to crops. Many landraces are abandoned as farmers adopt a few high yielding varieties. This results in a significant loss of genetic variability. Thus, more diversity was found in a disease resistance gene in rice landraces than in common varieties (Thakur et al., 2015). Once again, the articles illustrate an emphasis on collecting cultivars even for orphan crops. For instance, the Ethiopian Institute of Biodiversity houses 5000 accessions of tef, a major staple crop for the country (Assefa et al., 2015). The number represents a four-fold increase over the last 20 years. Likewise, significant resources exist for millet (Goron and Raizada, 2015).

Assessment of biodiversity requires a combination of phenotypic and molecular techniques. Technological improvements have been significant in all areas. Hence, metabolomics can now detect many complex molecules such as aroma compounds. As a result, factors determining the taste of strawberry (Negri et al., 2015) and other fruits can be elucidated. However, the most spectacular change comes from the decrease in cost and enhanced speed of Next Generation Sequencing. Fifteen years ago, international consortiums sequenced a few model species and major crops. Now many universities are acquiring their own sequencing equipment. Most plants covered in the articles harbor some sequencing resources either as transcriptomics or as an annotated genome. This opens enormous possibilities for identifying new genetic variations, assessing the variability of isozymes, and associating a given phenotype with regions in the genome. Thus, sequencing reveals the enormous evolutionary potential of viruses (Huang et al., 2015). In addition, extensive diversity was found in the MAP, MAPP, MAPPP kinase families in grapevine (Çakir and Kılıçkaya, 2015).

Finally, these articles illustrate the spectacular biological diversity of plants. They seem to survive in any environment, by any means. Hence, a seemingly fixed structure such as the cell wall shows remarkable flexibility in response to environmental, physiological, and genetic cues (Parrotta et al., 2015). Moreover, the richness of plant metabolism is further enhanced by symbiotic relations with microorganisms (Mousa and Raizada, 2015). However, while well described, this diversity harbors many mysteries as to biological functions, evolutionary adaptations, and physiological mechanisms. With the enhanced technologies, let's hope we can understand and safeguard our beautiful world.

Author Contributions

JC, CD, and AS contacted participants; JC and AS edited manuscripts; NA and NO partly edited articles.

Conflict of Interest Statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

References

Assefa, K., Cannarozzi, G., Girma, D., Kamies, R., Chanyalew, S., Plaza-Wüthrich, S., et al. (2015). Genetic diversity in tef [Eragrostis tef (Zucc.) Trotter]. Front. Plant Sci. 6:177. doi: 10.3389/fpls.2015.00177

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Barcelos, E., De Almeida Rios, S., Cunha, R. N. V., Lopes, R., Motoike, S. Y., Babiychuk, E., et al. (2015). Oil palm natural diversity and the potential for yield improvement. Front. Plant Sci. 6:190. doi: 10.3389/fpls.2015.00190

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Çakir, B., and Kılıçkaya, O. (2015). Mitogen-activated protein kinase cascades in Vitis vinifera. Front. Plant Sci. 6:556. doi: 10.3389/fpls.2015.00556

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Huang, L., Li, Z., Wu, J., Xu, Y., Yang, X., Fan, L., et al. (2015). Analysis of genetic variation and diversity of rice stripe virus populations through high-throughput sequencing. Front. Plant Sci. 6:176. doi: 10.3389/fpls.2015.00176

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Negri, A. S., Allegra, D., Simoni, L., Rusconi, F., Tonelli, C., Espen, L., et al. (2015). Comparative analysis of fruit aroma patterns in the domesticated wild strawberries “Profumata di Tortona” (F. moschata) and “Regina delle Valli” (F. vesca). Front. Plant Sci. 6:56. doi: 10.3389/fpls.2015.00056

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Parrotta, L., Guerriero, G., Sergeant, K., Cai, G., and Hausman, J.-F. (2015). Target or barrier? The cell wall of early- and later- diverging plants vs cadmium toxicity: differences in the response mechanisms. Front. Plant Sci. 6:133. doi: 10.3389/fpls.2015.00133

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Skirycz, A., Castilho, A., Chaparro, C., Carvalho, N., Tzotzos, G., and Siqueira, J. O. (2014). Canga biodiversity, a matter of mining. Front. Plant Sci. 5:653. doi: 10.3389/fpls.2014.00653

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Thakur, S., Singh, P. K., Das, A., Rathour, R., Variar, M., Prashanthi, S. K., et al. (2015). Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature. Front. Plant Sci. 6:345. doi: 10.3389/fpls.2015.00345

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Keywords: natural diversity, crop improvement, next generation sequencing, biodiversity, plant biotechnology

Citation: Cross JM, Darrah C, Oraguzie N, Ahmadi N and Skirycz A (2015) Editorial: Natural diversity in the new millennium. Front. Plant Sci. 6:897. doi: 10.3389/fpls.2015.00897

Received: 20 September 2015; Accepted: 09 October 2015;
Published: 29 October 2015.

Edited and reviewed by: Richard A. Jorgensen, University of Arizona, USA

Copyright © 2015 Cross, Darrah, Oraguzie, Ahmadi and Skirycz. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Joanna M. Cross, joanna.cross@inonu.edu.tr