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Frontiers in Plant Science

Plant Genetics and Genomics

Original Research ARTICLE

Front. Plant Sci., 31 January 2017 | https://doi.org/10.3389/fpls.2017.00098

VviAPRT3 and VviFSEX: Two Genes Involved in Sex Specification Able to Distinguish Different Flower Types in Vitis

  • 1Linking Landscape, Environment, Agriculture and Food, Instituto Superior de Agronomia, Universidade de Lisboa, Lisboa, Portugal
  • 2Instituto Nacional de Investigação Agrária e Veterinária, Torres Vedras, Portugal
  • 3Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal
  • 4Biosystems and Integrative Sciences Institute, Plant Functional Biology Centre, University of Minho, Braga, Portugal

Vitis vinifera vinifera is a hermaphrodite subspecies, while its ancestor, Vitis vinifera sylvestris, is dioecious. We have identified two genes that together allow the discrimination between male, female and hermaphrodite Vitis plants. The sex locus region on chromosome 2 was screened resulting in the discovery of a new gene, VviFSEX. The same screening revealed another gene, VviAPRT3, located in the sex region, that be used as a sex marker. Both genes are good candidates to be involved in flower sex differentiation in grapevine. To assess their role in sex specification, spatial and temporal expression analysis was performed. The expression of VviFSEX is detected in petals, stamens and carpel primordia of all flower types, making its putative function unclear; however, female plants display a single allele for this gene, while male and hermaphrodites display two alleles. On the other hand, the specific expression of VviAPRT3 in the carpel primordial of male plants suggests a possible role in the abortion of pistil structures. We propose a model to explain the carpel abortion in male flowers and the absence of stamen viability in female flowers. In addition, this work reinforces the presence of a sex locus on Vitis chromosome 2.

Introduction

The cultivated grapevine (Vitis vinifera subs vinifera) is a self-pollinating hermaphrodite subspecies and it co-exists naturally with its ancestor (Vitis vinifera subs sylvestris) in many habitats throughout the Mediterranean area. V. v. sylvestris is dioecious with male plants producing flowers with erect stamens and fertile pollen, but also display a reduced pistil with no style or stigma (but with nectaries), whereas the female flowers have a perfect formed pistil (with style and stigma) but reflexed stamens with infertile pollen (Caporali et al., 2003). Nevertheless, at early developmental stages, male and female flowers are morphologically indistinguishable from a hermaphrodite flower, becoming unisexual only at later development stages, due to organ (Ramos et al., 2014).

In grapevine the sex locus responsible for sexual dimorphism has been identified in previous genetic mapping studies (Dalbó et al., 2000; Riaz et al., 2006; Marguerit et al., 2009), and is located close to the genetic marker VviS3 (Dalbó et al., 2000) on chromosome 21. The genetic marker VviIB23, which was used essentially in mapping populations, is also associated to the sex locus (Riaz et al., 2006). More recently, a region of 143 kb on chromosome 2 (12x_v0), between 4,907,434 and 5,050,616 bp, was identified as being responsible for sex specification in V. v. vinifera (Fechter et al., 2012). Although several genes in this region were good candidates to be involved in flower sex differentiation, only one of them, ADENINE PHOSPHORIBOSYILTRANSFERASE (VviAPRT), was identified as a marker able to discriminate female from male/hermaphrodite plants (Fechter et al., 2012). VviAPRT gene was located on chromosome 2 of the V. v. vinifera physical map based on the reference genome PN40024 8x version2, but is absent from the current Vitis genome annotation1 (12x_v2.1). Another study reported a 158 kb region, containing the previous 143 kb with linkage disequilibrium and genes exhibiting XY type polymorphism, such as VviAPRT (Picq et al., 2014). The latest annotation places this marker (VIT_200s1847g00010) on a set of unassigned scaffolds, referred in the Vitis database as “unknown chromosome.”

A chromosome 2 region (scaffold _154) was also identified as having homology with a section of the unknown chromosome (scaffold _233) in the 12x_v0 genome version (Fechter et al., 2012; Picq et al., 2014). It was hypothesized that this sequence on chromosome 2 corresponds to the female allele and the scaffold_233 sequence on the unknown chromosome corresponds to the hermaphrodite allele (Picq et al., 2014). Therefore, the reference genome PN40024 would be heterozygous regarding the sex locus (Picq et al., 2014).

APRT homologues in other species work as a key metabolic enzymes participating in cytokinin metabolism (Mok and Mok, 2001; Allen et al., 2002). In addition to auxins, cytokinins have been shown to be important contributors for flower sex specification in Mercurialis (Durand and Durand, 1991a,b). In Arabidopsis thaliana, AtAPRT1 mutants develop male sterility due to atypical pollen formation (Moffatt and Somerville, 1988; Gaillard et al., 1998). In V. v. sylvestris male plants, the exogenous application of a synthetic cytokinin [6-benezylamino-9-(2-tetrahy- dropyranyl)-purine] induces the development of hermaphrodite flowers and the production of viable pollen and normal fruits (Negi and Olmo, 1966). Therefore, VviAPRT could be a possible candidate gene involved in sex specification in V. v. sylvestris, potentially through its influence in cytokinin metabolism.

This work is an attempt to understand the role of VviAPRT3 gene in Vitis flower sex specification. Through in situ hybridization, in male, female and hermaphrodite flower tissues we determined the developmental stages and flower organs in which this gene is expressed. Additionally, a screening of the V. v. vinifera chromosome 2 allowed the identification of a new marker gene, VIT_202s0154g00200, (referred here as VviFSEX) that, in combination with VviAPRT3, allows the discrimination between male, female and hermaphrodite V. vinifera plants.

Material and Methods

Plant Sampling

For in situ hybridization and RT-qPCR, inflorescences at phenological developmental stages B, D, G, and H (Baggiolini, 1952) were collected from all V. v. sylvestris parental individuals of a collection, composed by 22 female (F) and 11 male (M) individuals. The same developmental stages were sampled from 12 hermaphrodites V. v. vinifera cv. Touriga Nacional (Her) (Figure 1) in Dois Portos (Lisbon district, Portugal) developmental stages B–D could not be used due to the woody nature of their tissues. However, at later stages (D and subsequent) stages the plants have several developmental flower stages within the same inflorescence.

FIGURE 1
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FIGURE 1. Grapevine flower development stages. Inflorescences of Vitis plants in flower development stages B, D, G and H (according to Baggiolini, 1952). After stage H is shown an inflorescence with closed flowers, similar in the three types of flower. Open flowers were dissected to obtain the carpel. Flower types are indistinguishable until the open flower stage when flower sexual organs are visible. Flowers of V. v. sylvestris male (M) plants display an incomplete carpel without style or stigma but with erect stamens. Flowers of V. v. sylvestris female (F) plants display a well developed carpel surrounded by reflected stamens, with infertile pollen. V. v. vinifera. Hermaphrodite (Her) flowers display a well-developed carpel and small erect stamens with fertile pollen. C, carpel. Scale bar = 500 μm.

Individual closed and open flowers (without flower cap) were collected from the three flower types at the later stage H, and carpels were dissected from open flowers and used in RT-qPCR (Figure 1). Additionally, leaves from V. v. sylvestris and V. v. vinifera, were collected for DNA extraction. Samples were collected during April (2014 and 2015).

Nucleic Acids Extraction, cDNA Synthesis and Fragments Amplification

The DNA was extracted with the DNeasy® Plant Mini Kit (Quiagen, USA) following the manufacturer’s instructions. Total RNA was extracted with the SpectrumTMTotal RNA Kit (Sigma–Aldrich, Inc, USA) following the manufacturer’s instructions. The obtained DNA was stored at 4°C and the extracted RNA stored at -80°C between handling. The DNA and RNA concentration was determined using a Synergy HT Nanodrop system (Biotek, Germany), with the software Gen5TM (Biotek, Germany).

cDNA from male, female and hermaphrodite inflorescences from the four flower developmental stages, as well as cDNA from closed flowers, open flowers and from carpels (Figure 1), was synthesized with the RETROscript® kit (Ambion, Life Technologies, Spain), following the manufacturer’s protocol and amplified by PCR with specific primers (Table 1).

TABLE 1
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TABLE 1. Primers used for VviAPRT3 and VviFSEX (VIT_202s0154g00200) gene amplification.

To determine the most efficient cDNA concentration to be used for RT-qPCR, a serial of decimal dilutions was tested. Amplification reactions were performed with two biological samples per phenological stage in triplicates containing 5 μL of master mix (SsoFast_EvaGreen Supermix, Bio- Rad, USA), 0.4 μM of specific primers and 0.21 μg of cDNA in a 20 μL reaction, according to Ramos et al. (2014). The following program was applied: initial polymerase activation, 95°C, 2 min; 40 cycles at 95°C for 15 s (denaturation); 57°C for 30 s (annealing); 76°C for 30 s (extension) with a fluorescence reading at the end of each cycle. The run was completed with a melting curve analysis to confirm the amplification specificity. To confirm amplicon size, RT-qPCR products were run on 2.2% (w/v) agarose gel. RT-qPCR runs were performed, for each gene, with decimal dilutions series of a precisely calculated number of plasmid copies to create a calibration ruler. Cqs (threshold cycles) obtained from RNA samples was matched against the calibration ruler to estimate the number of transcripts. The absolute number of transcripts was calculated using the following formula: Number of transcripts = C × NA/M; where number of transcripts corresponds to the number of molecules μL-1 contained in the purified cDNA; C, concentration of the purified cDNA (g μL-1); M, the molecular weight of the cDNA gene fragment; NA, Avogadro’s number = 6.023 × 1023 molecules mole-1 (Whelan et al., 2003).

Identification of Gene Sequences

The sequence of ADENINE PHOSPHORIBOSYILTRANSFERASE (VviAPRT) gene was first obtained from Genoscope 8x genome version (GSVIVT00007310001)3. Since a blast with this gene sequence against Arabidopsis thaliana database (TAIR4) revealed great homology with AtAPRT3 (Fechter et al., 2012), from here on the gene will be referred to as VviAPRT3. Sequences from genes belonging to chromosome 2 in the previous identified 143 kb region (between 4,907,434 and 5,050,616 bp) (Fechter et al., 2012; Picq et al., 2014) and unknown chromosome were obtained from CRIBI Grape Database annotation 12x_v2.165 (Supplementary Table 1). For clarity, the meaning of acronyms used for gene annotation is explained; for instance, VIT_202s0154g00200, referred here as VviFSEX, was identified on Vitis vinifera subs vinifera genome, on the sequencing 12x version v2.1 annotation (VIT_2), on chromosome 2 (02), scaffold s0154g and received the gene number 00200.

Genomic DNA and cDNA sequences of VviAPRT3 and VviFSEX genes from the three flower types (male, female and hermaphrodite) were cloned into pGEM® T-easy vector system (Promega, Leiden, The Netherlands) and transformed into Escherichia coli DH5α competent cells. After plasmid isolation (PureLinkTM Quick Plasmid Miniprep Kit, Invitrogen, Carlsband, CA, USA) and sequencing, the sequences were aligned using Clustal Omega (Sievers et al., 2011; McWilliam et al., 2013; Li et al., 2015).

RNA In situ Hybridization

Plant tissue fixation, clearing, and in situ hybridization experiments were performed as previously described (Coen et al., 1990) with the following modifications: for the probe synthesis the cDNA of VviAPRT3 and VviFSEX (VIT_202s0154g00200) were cloned into the pGEM® T-easy vector system and amplified by PCR with the M13 forward/reverse primers and specific forward/reverse primers (Table 1). The PCR product was purified using the MinElute PCR Purification Kit (QIAGEN, Valencia, CA, USA), according to the manufacturer’s instructions and used as template for the riboprobe synthesis, which was carried with SP6 and T7 RNA polymerase to obtain the sense and antisense strand. The paraffin embedded material was sectioned at 7 μm and the tissue slices mounted with distilled water. Images were captured with a fluorescence microscope (Wild Leitz, Laborlux S) with an AxioCam HRM (Zeiss).

RT-qPCR Statistic Analysis

For the statistical analysis, expression values of VviAPRT3 and VviFSEX were transformed into log2 and tested through ANOVA using the program Graphpad Prism 5 (GraphPad Software, Inc.).

The samples with a p-value of the ANOVA lower than 0.05 were submitted to an additional Tukey test. The statistically significant differences were accepted when Tukey’s test p-value was lower than 0.05.

Results and Discussion

Vitis vinifera species display dioecious and hermaphrodite sexual systems, in which three types of flowers are observed: males and females in V. v. sylvestris and hermaphrodites in the cultivated subspecies V. v. vinifera. Male flowers are characterized by having long erect stamens and a reduced carpel without style or stigma, but with nectaries and ovaries (Figure 1). Female flowers have a complete carpel with style and stigma but short and reflex stamens (Figure 1) with infertile pollen (Caporali et al., 2003; Gallardo et al., 2009). The hermaphrodite flower displays functional male and female organs. The pistil is perfectly formed and fully functional with style, stigma and ovaries, and the stamens, although shorter than the male ones, are erect and produce viable pollen (Figure 1) (Carmona et al., 2008; Ramos et al., 2014; Valleau, 1916).

VviFSEX: a New Female Sex Marker

Previous work suggests the existence of two alleles on chromosome 2 of V. v. vinifera due to the high homology of this region with one of the unknown chromosome (Picq et al., 2014). Due to the putative existence of two alleles, we have analyzed all the genes present in the 143 kb region that are assigned to the scaffold_154 of chromosome 2 genome version 12x_v0 (VIT_202s0154gxxxxx) (Supplementary Table 1). The analysis showed eleven genes with high homology with genes present in scaffold_233 of the unknown chromosome (VIT_200s0233gxxxxx) (Supplementary Table 1). A pairwise alignment between homologous genes in both scaffolds revealed some sequence differences that were used to design PCR primers able to discriminate these genomic loci and, potentially, providing molecular markers for plant sex identity. Subsequently, these primer pairs were used to genotype 22 female, 11 male and 12 hermaphrodite plants. Based on the presence/absence of the amplified PCR products and their respective sizes, we noticed that only VIT_202s0154g00200 (VviFSEX) displays the differences predicted in silico. Two fragments with 449 and 413 bp were amplified from the DNA of male and hermaphrodite plants while a single fragment of 449 bp was amplified from female plants (Figure 2A). This genotyping approach allows the discrimination of female from male and hermaphrodite plants, and thus the VviFSEX gene sequence may be used as a genetic marker for female plants. The exact size of PCR products amplified from male, female and hermaphrodite was determined by sequencing analysis. This analysis showed that the 449 bp fragment present in all the flower types, despite being homologous to the 413 bp fragment of male and hermaphrodite individuals, contains an extra 36 bp region (Supplementary Figure 1). The sequence with the additional 36 bp may correspond to an alternative allele of this gene, being homozygous in female plants and heterozygous in male and hermaphrodite plants. Picq et al. (2014) had already suggested that a region of unknown chromosome homologous to the 143 kb region of chromosome 2 (Fechter et al., 2012) may correspond to different alleles of the same genes. In the present work we also identified several genes in the same scaffold of unknown chromosome with great homology to genes found on chromosome 2 (Supplementary Table 1). The comparison between the genomic sequences revealed some differences that suggest the existence of possible alleles.

FIGURE 2
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FIGURE 2. Genomic amplification of VviFSEX and VviAPRT3 genes in a Vitis population. (A) VviFSEX male plants (M) and the hermaphrodite (Her) display two fragments of 449 bp (blue arrow) and 413 bp (red arrow). Female (F) plants display a 449 bp fragment. (B) VviAPRT3 in male plants (M) display two fragments, one of 611 bp (blue arrow) and another of 541 bp (red arrow). The hermaphrodite (Her) and the female plants (F) display a 542 bp fragment. These amplifications were performed in all 45 plants (22 female; 11 male and 12 hermaphrodites V. v. vinifera cv. Touriga Nacional). Fragments size was determined by sequencing. 1 Kb+, genetic molecular marker.

It is important to note that the existence of an unknown chromosome in the reference genome (PN40024) indicates that the annotation is not concluded and it requires an additional effort to improve gene chromosome assignment (Jaillon et al., 2007).

Spatial and Temporal Expression of VviFSEX

After establishing VviFSEX as a marker gene for flower sex in grapevine, its spatial and temporal expression was analyzed during the development of male, female and hermaphrodite flowers. We cloned and sequenced the cDNAs from the three flower types and we found that they are identical (data not shown). RT-qPCR analysis of VviFSEX in flower developmental stages B, D, G, and H showed constant abundance of transcripts in all the developmental stages with no significant variation between the three flower types (Figure 3A). All the flower types follow a bisexual development pattern during the three early stages of floral development sampled (B, D, and G), but unisexuality arises by organ abortion in late stage H, when the maturity of all flower organs takes place.

FIGURE 3
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FIGURE 3. Absolute quantification by RT-qPCR of VviFSEX and VviAPRT3 transcripts during flower development. Expression of VviFSEX (A,B) and VviAPRT3 (C,D) genes in all three flower types in four development stages (A,C) and in closed flowers, mature flowers (open flowers) and carpels (B,D). M, male (dark green); F, female (light green); Her, hermaphrodite (brown) in log2 (absolute quantification). Error bars represent standard error. Significant differences were tested through ANOVA and the samples with a p-value lower than 0.05 were submitted to an additional Tukey test. Differences were accepted when Tukey’s test p-value was lower than 0.05. Statistical differences were found in G developmental stage when comparing with the previous stage, in all flower types and are represented by a square box. () represents significant differences (p < 0.05) when comparing the developmental stages between the three flower types.

The expression of VviFSEX was also analyzed in samples of later flowering stages ((closed flowers, open flowers and carpels (dissected from open flowers)) by RT-qPCR (Figure 1). We found that the expression level of VviFSEX is similar between female, male and hermaphrodite samples (Figure 3B). To evaluate the spatial expression pattern of VviFSEX in the different flower types, the transcript accumulation was analyzed in male, female and hermaphrodite flower sections by in situ hybridization. VviFSEX transcript was detected at early flower developmental stages in petal primordia and flower meristems in the three flower types (Figures 4A–C). When stamen primordia become evident, VviFSEX expression is observed in petals, stamens and in the carpel in all flower types (Figures 4D–F). Later in development, the expression remains in stamens and carpels but is no longer present in the petals (Figures 4G–I). The abundance and localization of VviFSEX transcripts is similar in the different flowers types of V. vinifera species. The analysis of VviFSEX protein sequence by the HMMER web server6 did not reveal significant homology with known proteins. However, we do not rule out a putative role of this gene in sex specification processes of grapevine due to its strong specific expression in the reproductive structures at later developmental stages. In fact, VviFSEX transcript is present in early stages in whorl 2, 3 and 4 but later in development it is retained in whorl 3 and 4 and excluded from whorl 2 (Figure 4). This may indicate that VviFSEX acts redundantly to form petals in early stages and stamens and carpels in late stages (Figure 4).

FIGURE 4
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FIGURE 4. In situ hybridization of the VviFSEX gene in several flower developmental stages in three Vitis flower types. The transcript of VviFSEX gene is present in early flower developmental stages in male (A), female (B) and hermaphrodite (C) plants when the floral primordia display emerging sepals and/or petals. When stamens are visible VviFSEX is expressed in petals, stamens and carpel region, throughout the three flower types (D–F). Later, the gene transcript remains in stamens and in the carpel but seems to be absent from petals (G–I). Cutting planes are represented in (J–L) with the respective slide section outlined. Cuts were performed with 7 μm thick. Flowers structures: se, sepals; pt, petals; st, stamens; c, carpel. Scale bar = 100 μm.

VviAPRT3: a Maker for Male Plants

According to Fechter et al. (2012), the VviAPRT3 gene was located in a 143 kb region and it might have a role in flower sex specification. These authors used the second intron of VviAPRT3 as a marker able to differentiate female plants of several different Vitis species, including V. v. vinifera and V. v. sylvestris subspecies (Fechter et al., 2012). However, it was not possible to amplify the VviAPRT fragment previously described Fechter et al. (2012) in the plant material used in the current work, since the primers or the gene sequences were not provided. The VviAPRT3 marker was located on the chromosome 2 of the reference genome between 4,986,517 bp and 5,025,265 bp (Fechter et al., 2012). In the 8x genome reference sequence on Genoscope database7, VviAPRT3 was located 200 kb downstream of the reported location (GSVIVT00007310001). In fact, the sex region of 143 kb in the 12x_v2.1 was located roughly 100 kb downstream in the 8x version of the reference genome, although most of the genes were kept together (Supplementary Table 2). However, in the 12x_v0 and v2.1 versions, VviAPRT3 was allocated to the unknown chromosome (VIT_200s1847g00010) (Supplementary Table 2) with a different genomic structure (Supplementary Figure 2). In Vitis, the expression levels of VviAPRT3 was first reported in the transcriptome assembly of different stages of flower development (Ramos et al., 2014). The transcriptomic data revealed that VviAPRT3 gene is differentially expressed in male, female and hermaphrodite plants. The putative involvement of this gene in grapevine sex specification and the disagreement between annotation and sequencing versions led us to further investigate its genomic structure. To determine which annotation version stands correct regarding VviAPRT3 structure, several primers were designed to amplify VviAPRT3 (Supplementary Figure 2). PCR amplification of cDNA with primers for the first and last exons (F1 + R2) originated a fragment of 443 bp in the three flower types (Supplementary Figure 2). cDNA sequencing revealed no differences between the fragments amplified from the different flower types (data not show). Amplification with primers for the third and fourth exons (F2 + R1) resulted in a fragment of 689 bp, while the amplification with primers for the fourth and sixth exons (F2 + R2) resulted in a fragment of about 3,000 bp (Supplementary Figure 2). By using these specific primer combinations (Supplementary Figure 2), and sequencing the corresponding amplified fragments, we concluded that VviAPRT3 genomic structure, with six exons, five introns and a 2x repeat in the second intron, was accurately represented in the 8x genome version. Therefore, the VviAPRT3 sequence subject of this work and VviAPRT from Fechter et al. (2012) are most likely the same gene (Supplementary Table 2). Fechter et al. (2012) reported that VviAPRT3 was able to discriminate female flowers from the other flower types based on a 2x repeat present in the second intron in male and hermaphrodite plants. Thus, we designed primers flanking the 2x repeat in the second intron (F3 + R3) of VviAPRT3 (Table 1; Supplementary Figure 2) that amplify the tandem repeat region in the three flower types. Instead of distinguishing female from other plants, we were able to distinguish male from female and hermaphrodite plants. These plants displayed a fragment of 541 bp (Figure 2B), while male plants showed an additional fragment with 611 bp (Figure 2B). By sequencing the 541 bp fragments from each flower type it was possible to demonstrate that their genomic sequences are similar (Supplementary Figure 3). The fragment of 611 bp found solely in the male plants results from an insertion of 70 bp that is absent in female and hermaphrodite plants (Supplementary Figure 3).

VviAPRT3: a Putative Player in Vitis Sex Specification

To determine the spatio-temporal expression of VviAPRT3, the accumulation of transcripts was analysed in the four stages of flower development used in this work (B, D, G, and H) in male, female and hermaphrodite flowers of grapevine, by RT-qPCR and in situ hybridization (Figures 3 and 5).

FIGURE 5
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FIGURE 5. Analysis of VviAPRT3 expression during early flower development by in situ hybridization in three Vitis flower types. Expression of VviAPRT3 in early developmental stages in male (A,D), female (B,E) and hermaphrodite (C,F) flowers. VviAPRT3 expression is visible in male flowers (in blue/pink) in the center of flower meristem where the carpel will emerge (A). When stamen primordia become distinguishable, the expression expands to the internal side of the stamens (D). Expression of VviAPRT3 could not be detected in female and hermaphrodite flowers in early flower development (C,D), although it becomes visible when stamens begin to emerge (E,F). Cutting planes are represented in (G–I) with the respective section outlined. Cuts were performed with 7 μm thick. Flowers structures: se, sepals; pt, petals; st, stamens; c, carpel. Scale bar = 100 μm.

The expression pattern of VviAPRT3, previously found in the transcriptomic analysis of grapevine flowers (Ramos et al., 2014), was confirmed by RT-qPCR. VviAPRT3 gene has similar levels of expression at very early stages of flower development in all flower types (stage B and D). At G and H stages, the expression decreases in female and hermaphrodite flowers, whereas in male flowers the expression increases considerably (Figure 3C). Additionally, the expression of VviAPRT3 in closed flowers, open flowers and in carpels is comparatively similar (Figures 1 and 3D) but a considerably higher expression in male open flowers is still evident (Figure 3D). The increase in VviAPRT3 expression in stage G (early development of reproductive structures) of male flowers when compared to female and hermaphrodite, suggests that this gene may play a role in sex specification at late flowering stages in grapevine.

The spatio-temporal analysis of VviAPRT3 expression by in situ hybridization during early flower developmental stages, when floral meristems emerge, showed that this gene is expressed in the center of the male flower meristem, where the carpel primordia would arise (Figure 5A). The transcript accumulation of VviAPRT3 could not be detected in similar developmental stages of hermaphrodite and female flowers (Figures 5B,C). When male stamens primordia start to emerge, the expression of VviAPRT3 spans from the center of the flower to the inner sides of stamens (Figure 5D). At the same stage, in female and hermaphrodite flowers, the expression is very faint (Figures 5E,F), which is in agreement with the RT-qPCR results (Figures 3C,D). Later in development, when petals start to enclose the stamens and carpels, it is possible to visualize VviAPRT3 expression in carpel and stamens of male flowers (Figure 6A). At a similar stage, the mRNA of VviAPRT3 is almost undetectable in female and hermaphrodite flowers (Figures 6B,C). When sepals fully encapsulate the stamens and the carpels, VviAPRT3 expression is maintained in male stamens and carpels (Figure 6D). However, no detection of VviAPRT3 transcripts was observed in any flower organs of the female and hermaphrodite flowers, at the same stages (Figures 6E,F). Transversal sections of flowers show unambiguously the presence of VviAPRT3 transcript in male stamens and its absence in female and hermaphrodite flowers (Figures 6G–I).

FIGURE 6
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FIGURE 6. Analysis of VviAPRT3 expression during late flower development by in situ hybridization in three Vitis flower types. Expression of VviAPRT3 in late developmental stages of male (A,D,G), female (B,E,H) and hermaphrodite (C,F,I) flowers. VviAPRT3 expression is visible (in blue/pink) in carpels and stamens of male plants (A,D). VviAPRT3 expression in the stamens is confined to the internal side (G). When petals start to enclose the sepals, VviAPRT3 expression is almost undetectable in female and hermaphrodite flowers (B,C, respectively) but completely disappears in later stages (E,H: female; F,I: hermaphrodite). Longitudinal sections (A–F); Transversal sections (G–I). The cut plane of transversal sections is on bud top above the carpel. Cutting planes are represented in (J–L) with the respective longitudinal section outlined. Cuts were performed with 7 μm thick. Flowers structures: se, sepals; pt, petals; st, stamens; c, carpel. Scale bar = 100 μm.

The apparent differences between RT-qPCR and in situ hybridization results at early stages B and D are due to the type of sample used and the nature of the technique. Each inflorescence phenological stage (Baggiolini, 1952) encloses flower meristems at different developmental stages. The RT-qPCR was performed to evaluate the temporal expression considering the inflorescence phenological stage. On the other hand, the in situ hybridization allows the observation of spatial and temporal gene expression considering the developmental stage of a specific flower meristem.

In Arabidopsis thaliana an homologous gene of VviAPRT3, AtAPRT1, is involved in reproductive development by playing an essential role during pollen development (Moffatt and Somerville, 1988). However, the lack of VviAPRT3 expression in the stamens of hermaphrodite flowers at late stages of development, suggests a different role in the Vitis genus. VviAPRT3 expression in the carpel primordia of male flowers hints a specific role for their development, since female and hermaphrodite flowers have no detectable VviAPRT3 transcripts. The expression of VviAPRT3 in the central whorl of male flowers may interfere with the normal development of the pistil and influence its later arrest. In Arabidopsis thaliana, AtAPRT1 codes for a key metabolic enzyme that plays a role in maintaining cytokinin homeostasis (Zhang et al., 2013). In Vitis, hormones can modify flower sex identity, with cytokinins playing a major role in the process (Negi and Olmo, 1966, 1971; Zhang et al., 2013). Exogenous application of this hormone in V. v. sylvestris converts male flowers to hermaphrodites (Negi and Olmo, 1971), bypassing the genetic regulatory mechanisms that suppress pistil development (Iizuka and Hashizume, 1968). Thus, high levels of cytokinins might be essential for carpel development. In male flowers of V. v. sylvestris, the VviAPRT3 enzyme activity may be promoting the inactivation of cytokinins, which may lead to carpel abortion. Considering our results, we propose a model where in female and hermaphrodite flowers the activity of a putative regulatory gene/element may block the VviAPRT3 transcription, and thus the female organ can correctly develop (Figure 7). Also, its absence in stamens of hermaphrodite and female flowers, suggests that VviAPRT3 is not involved in the correct formation of male organs (Figure 7). However, we do not rule out the hypothesis that the over expression of VviAPRT3 in male plants could have a dual role: the enhancement of male traits (Gallardo et al., 2009) and a participation in carpel arrest. To explain the differential expression in stamens of the three flower types, we propose the action of another gene in the third whorl of female flowers with a role in stamens deflection and consequently the formation of unviable pollen (Figure 7).

FIGURE 7
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FIGURE 7. Schematic representation of VviAPRT3 expression in three developmental stages of Vitis flower development. VviAPRT3 is highly expressed in male plants in the 3rd and 4th whorl with a possible role in the arrest of carpel formation. Its absence in female and hermaphrodite flowers point for the presence of a gene (X) that inhibit VviAPRT3 in these flowers allowing the correct carpel formation. Additionally, the correct stamens development in male and hermaphrodite flowers and the reflexed stamens in female leads us to anticipate the possibility of another gene acting in the 3rd whorl that in female flowers make reflexed stamens (with unviable pollen).

Conclusion

In this work, we found two genes that when analyzed simultaneously can be a valuable resource in a breeding program, since they allow the distinction between V. vinifera individuals with different flower types, male, female or hermaphrodite. Although the molecular pathways leading to dioecy in grapevine are yet to be clarified, the information provided by this work suggests that VviAPRT3 may be a player in male sex specification. The presence of VviAPRT3 transcripts in the carpel primordia of male plants indicates a possible function in the arrest of this organ in male flowers. Its function in the third whorl of male flowers is unclear; however, the absence of its expression in the female and hermaphrodite flowers rules out a role in anther development, since its presence would be necessary in hermaphrodite flowers for proper stamen development. Additionally, the phenotype of female flowers suggests the activity of another gene that causes the abnormal stamen development of stamens.

Author Contributions

JC, MR, and MC were involved in experimental design and interpretation of data; JC establish V. v. sylvestris collection and collected morphologic data; JC and HS performed experiments; JC wrote the manuscript; MR, MNR, HS, MC and SA reviewed and edited the manuscript; MR supervised experiments. All authors contributed to editing and approving the final version of the manuscript.

Funding

This work was supported by the funded project PTDC/AGR-GPL/119298/2010 from Fundação para a Ciência e Tecnologia, LEAF, Linking Landscape, Environment, Agriculture and Food (UID_AGR/04129/2013) and MMRCosta, MRocheta, JLCoito and MRamos by the fellowships SFRH/BSAB/113781/2015, SFRH/BPD/111249/2015, SFRH/BD/85824/2012 and SFRH/BD/110274/2015, respectively.

Conflict of Interest Statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
The reviewer MC and handling Editor declared their shared affiliation, and the handling Editor states that the process nevertheless met the standards of a fair and objective review.

Acknowledgments

We are also grateful to Eng. Eiras-Dias from Instituto Nacional de Investigação Agrária e Veterinária, Dois Portos, for the collaboration in this work allowing the access to the Vitis collection.

Supplementary Material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/article/10.3389/fpls.2017.00098/full#supplementary-material

Footnotes

  1. ^ http://genomes.cribi.unipd.it/grape/
  2. ^ http://www.genoscope.cns.fr/externe/GenomeBrowser/Vitis/entry_ggb.html
  3. ^ http://www.genoscope.cns.fr/externe/GenomeBrowser/Vitis/
  4. ^ https://www.arabidopsis.org/
  5. ^ http://genomes.cribi.unipd.it/gb2/gbrowse/public/vitis_vinifera_v2/
  6. ^ http://hmmer.org/
  7. ^ http://www.genoscope.cns.fr/externe/GenomeBrowser/Vitis/

References

Allen, M., Qin, W., Moreau, F., and Moffatt, B. (2002). Adenine phosphoribosyltransferase isoforms of Arabidopsis and their potential contributions to adenine and cytokinin metabolism. Physiol. Plant. 115, 56–68. doi: 10.1034/j.1399-3054.2002.1150106.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Baggiolini, M. (1952). Les stades repères dans le developpement annuel de la vigne et leur utilisation pratique. Rev. Rom. Agric. Vitic. Arbor. 8, 4–6.

Google Scholar

Caporali, E., Spada, A., Marziani, G., Failla, O., and Scienza, A. (2003). The arrest of development of useless reproductive organs in the unisexual flower of Vitis vinifera ssp silvestris. Acta Hortic. 603, 225–228. doi: 10.1007/s00497-003-0169-5

CrossRef Full Text | Google Scholar

Carmona, M. J., Chaïb, J., Martínez-Zapater, J. M., and Thomas, M. R. (2008). A molecular genetic perspective of reproductive development in grapevine. J. Exp. Bot. 59, 2579–2596. doi: 10.1093/jxb/ern160

PubMed Abstract | CrossRef Full Text | Google Scholar

Coen, E. S., Romero, J., Doyle, S., Elliott, R., Murphy, G., and Carpenter, R. (1990). Floricaula: a homeotic gene required for flower development in antirrhinum majus. Cell 63, 1311–1322. doi: 10.1016/0092-8674(90)90426-F

PubMed Abstract | CrossRef Full Text | Google Scholar

Dalbó, M. A., Ye, G. N., Weeden, N. F., Steinkellner, H., Sefc, K. M., and Reisch, B. I. (2000). A gene controlling sex in grapevines placed on a molecular marker-based genetic map. Genome 43, 333–340. doi: 10.1139/g99-136

PubMed Abstract | CrossRef Full Text | Google Scholar

Durand, B., and Durand, R. (1991a). Male sterility and restored fertility in annual mercuries, relations with sex differentiation. Plant Sci. 80, 107–118. doi: 10.1016/0168-9452(91)90276-E

CrossRef Full Text | Google Scholar

Durand, B., and Durand, R. (1991b). Sex determination and reproductive organ differentiation in Mercurialis. Plant Sci. 80, 49–65. doi: 10.1016/0168-9452(91)90272-A

CrossRef Full Text | Google Scholar

Fechter, I., Hausmann, L., Daum, M., Sörensen, T. R., Viehöver, P., Weisshaar, B., et al. (2012). Candidate genes within a 143 kb region of the flower sex locus in Vitis. Mol. Genet. Genomics 287, 247–259. doi: 10.1007/s00438-012-0674-z

PubMed Abstract | CrossRef Full Text | Google Scholar

Gaillard, C., Moffatt, B. A., Blacker, M., and Laloue, M. (1998). Male sterility associated with APRT deficiency in Arabidopsis thaliana results from a mutation in the gene APT1. Mol. Gen. Genet 257, 348–353. doi: 10.1007/s004380050656

PubMed Abstract | CrossRef Full Text | Google Scholar

Gallardo, A., Ocete, R., López, M. Á, Lara, M., and Rivera, D. (2009). Assessment of pollen dimorphism in populations of Vitis vinifera L. subsp. sylvestris (Gmelin) Hegi in Spain. Vitis J. Grapevine Res. 48, 59–62.

Iizuka, M., and Hashizume, T. (1968). Induction of female organs in staminate grape by 6-substituted adenine derivatives. Japan. J. Genet. 43, 393–394. doi: 10.1266/jjg.43.393

CrossRef Full Text | Google Scholar

Jaillon, O., Aury, J.-M., Noel, B., Policriti, A., Clepet, C., Casagrande, A., et al. (2007). The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449, 463–467. doi: 10.1038/nature06148

PubMed Abstract | CrossRef Full Text | Google Scholar

Li, W., Cowley, A., Uludag, M., Gur, T., McWilliam, H., Squizzato, S., et al. (2015). The EMBL-EBI bioinformatics web and programmatic tools framework. Nucleic Acids Res. 43, W580–W584. doi: 10.1093/nar/gkv279

PubMed Abstract | CrossRef Full Text | Google Scholar

Marguerit, E., Boury, C., Manicki, A., Donnart, M., Butterlin, G., Némorin, A., et al. (2009). Genetic dissection of sex determinism, inflorescence morphology and downy mildew resistance in grapevine. Theor. Appl. Genet. 118, 1261–1278. doi: 10.1007/s00122-009-0979-4

PubMed Abstract | CrossRef Full Text | Google Scholar

McWilliam, H., Li, W., Uludag, M., Squizzato, S., Park, Y. M., Buso, N., et al. (2013). Analysis Tool Web Services from the EMBL-EBI. Nucleic Acids Res. 41, 597–600. doi: 10.1093/nar/gkt376

PubMed Abstract | CrossRef Full Text | Google Scholar

Moffatt, B., and Somerville, C. (1988). Positive selection for male-sterile mutants of Arabidopsis lacking adenine phosphoribosyl transferase activity. Plant Physiol. 86, 1150–1154. doi: 10.1104/pp.86.4.1150

PubMed Abstract | CrossRef Full Text | Google Scholar

Mok, D. W., and Mok, M. C. (2001). Cytokinin metabolism and action. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52, 89–118. doi: 10.1146/annurev.arplant.52.1.89

PubMed Abstract | CrossRef Full Text | Google Scholar

Negi, S., and Olmo, H. (1966). Sex conversion in a male Vitis vinifera L. by a Kinin. Science 152, 1624–1625. doi: 10.1126/science.152.3729.1624

PubMed Abstract | CrossRef Full Text | Google Scholar

Negi, S. S., and Olmo, H. P. (1971). Conversion and determination of sex in Vitis vinifera L. (sylvestris). Vitis 9, 265–279.

Google Scholar

Picq, S., Santoni, S., Lacombe, T., Latreille, M., Weber, A., Ardisson, M., et al. (2014). A small XY chromosomal region explains sex determination in wild dioecious V. vinifera and the reversal to hermaphroditism in domesticated grapevines. BMC Plant Biol. 14:229. doi: 10.1186/s12870-014-0229-z

PubMed Abstract | CrossRef Full Text | Google Scholar

Ramos, M. J., Coito, J. L., Silva, H. G., Cunha, J., Costa, M. M., and Rocheta, M. (2014). Flower development and sex specification in wild grapevine. BMC Genomics 15:1095. doi: 10.1186/1471-2164-15-1095

PubMed Abstract | CrossRef Full Text | Google Scholar

Riaz, S., Krivanek, A. F., Xu, K., and Walker, M. A. (2006). Refined mapping of the Pierce’s disease resistance locus, PdR1, and Sex on an extended genetic map of Vitis rupestris x V. arizonica. Theor. Appl. Genet. 113, 1317–1329. doi: 10.1007/s00122-006-0385-0

PubMed Abstract | CrossRef Full Text | Google Scholar

Sievers, F., Wilm, A., Dineen, D., Gibson, T. J., Karplus, K., Li, W., et al. (2011). Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol. 7, 539. doi: 10.1038/msb.2011.75

PubMed Abstract | CrossRef Full Text | Google Scholar

Valleau, W. D. (1916). Inheritance of Sex in the Grape. Am. Nat. 50, 554. doi: 10.1086/279565

CrossRef Full Text | Google Scholar

Whelan, J. A., Russell, N. B., and Whelan, M. A. (2003). A method for the absolute quantification of cDNA using real-time PCR. J. Immunol. Methods 278, 261–269. doi: 10.1016/S0022-1759(03)00223-0

CrossRef Full Text | Google Scholar

Zhang, X., Chen, Y., Lin, X., Hong, X., Zhu, Y., Li, W., et al. (2013). Adenine phosphoribosyl transferase 1 is a key enzyme catalyzing cytokinin conversion from nucleobases to nucleotides in arabidopsis. Mol. Plant 6, 1661–1672. doi: 10.1093/mp/sst071

PubMed Abstract | CrossRef Full Text | Google Scholar

Keywords: Vitis, hermaphrodite, dioecious, flower, gene marker, sex

Citation: Coito JL, Ramos MJN, Cunha J, Silva HG, Amâncio S, Costa MMR and Rocheta M (2017) VviAPRT3 and VviFSEX: Two Genes Involved in Sex Specification Able to Distinguish Different Flower Types in Vitis. Front. Plant Sci. 8:98. doi: 10.3389/fpls.2017.00098

Received: 05 November 2016; Accepted: 17 January 2017;
Published: 31 January 2017.

Edited by:

Changbin Chen, University of Minnesota, USA

Reviewed by:

Kashmir Singh, Panjab University, Chandigarh, India
Matthew Clark, University of Minnesota, USA

Copyright © 2017 Coito, Ramos, Cunha, Silva, Amâncio, Costa and Rocheta. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Margarida Rocheta, rocheta@isa.ulisboa.pt