Sec. Plant Development and EvoDevo
Volume 11 - 2020 | https://doi.org/10.3389/fpls.2020.00544
Root Growth Adaptation to Climate Change in Crops
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Madrid, Spain
Climate change is threatening crop productivity worldwide and new solutions to adapt crops to these environmental changes are urgently needed. Elevated temperatures driven by climate change affect developmental and physiological plant processes that, ultimately, impact on crop yield and quality. Plant roots are responsible for water and nutrients uptake, but changes in soil temperatures alters this process limiting crop growth. With the predicted variable climatic forecast, the development of an efficient root system better adapted to changing soil and environmental conditions is crucial for enhancing crop productivity. Root traits associated with improved adaptation to rising temperatures are increasingly being analyzed to obtain more suitable crop varieties. In this review, we will summarize the current knowledge about the effect of increasing temperatures on root growth and their impact on crop yield. First, we will describe the main alterations in root architecture that different crops undergo in response to warmer soils. Then, we will outline the main coordinated physiological and metabolic changes taking place in roots and aerial parts that modulate the global response of the plant to increased temperatures. We will discuss on some of the main regulatory mechanisms controlling root adaptation to warmer soils, including the activation of heat and oxidative pathways to prevent damage of root cells and disruption of root growth; the interplay between hormonal regulatory pathways and the global changes on gene expression and protein homeostasis. We will also consider that in the field, increasing temperatures are usually associated with other abiotic and biotic stresses such as drought, salinity, nutrient deficiencies, and pathogen infections. We will present recent advances on how the root system is able to integrate and respond to complex and different stimuli in order to adapt to an increasingly changing environment. Finally, we will discuss the new prospects and challenges in this field as well as the more promising pathways for future research.
Climate Change and Crop Yield
Effects of climate change are accelerating significantly since the last century. Changes in weather conditions and increases in the occurrence of extreme events are being felt more often. The Earth’s climate continues to warm and, all the model simulations predict a global trend to warmer temperatures (Lean and Rind, 2009). Considering the temperature data, the northern hemisphere is warming more rapidly than the southern hemisphere (Foster and Rahmstorf, 2011). Although long term weather changes are more difficult to predict, it is expected that, by 2050, the global mean temperature increase 1.5–2°C. These changes in the global temperature would cause further alterations in the climate leading to an increased frequency of heat-waves, fewer days of freezing temperatures, less rainfall but more intense precipitations and higher incidence of droughts and other weather extremes experienced across the globe that will negatively affect agricultural production (Easterling et al., 2000; Dempewolf et al., 2014). The global population is expected to reach nine billion by 2050, representing an additional two billion people to feed (Ray et al., 2013). The projections show that feeding world’s population would require raising the overall food production by around 70% by 2050 (Global agriculture toward 2050. Rome, FAO, 2009a). However, current trajectory shows that the rates of global production in key crops would increase far below what is needed to produce enough food to meet the raising population demands (Ray et al., 2013). This widening mismatch between demand and supply is causing concern for future food security (Godfray et al., 2010). Further reasons for alarm are the yield losses predicted to be provoked by climate change (Lobell et al., 2011; Tai et al., 2014). Although climate changes will not impact crop production evenly according to geographical distribution, it will threaten food production globally (Thiault et al., 2019). For all those reasons, there is an urgent need to maintain and improve crop productivity under these climatic constrains (Bailey-Serres et al., 2019; Shan-e-Ali Zaidi et al., 2019).
Climate Change Impact on Crops
Climate change is a long-term challenge, but requires urgent action given the pace and the scale by which greenhouse gases are accumulating in the atmosphere and the risk of more than 2°C global temperature rise. Greenhouse gases (CO2, O3, and CH4) driving climate change, affect directly crop productivity (IPCC, 2014). Higher concentrations of CO2 are expected to act as a fertilizer by improving net photosynthesis rates and increasing water use efficiency (Long et al., 2004; Long et al., 2004; Deryng et al., 2016). This positive effect is higher in C3 plants such as wheat, rice and soybean, due to the limited photosynthetic output of photorespiratory carbon losses. Nevertheless, in the long term, the constant increment of CO2 concentration will have a negative impact in the climate, thus counterbalancing the increase in crop yield (Specht et al., 1999; Long et al., 2004; Dong et al., 2018; Senapati et al., 2019; Wei et al., 2019). On the other hand, O3 changes have significant negative effects on the yield of major agricultural crops. O3 is one of the most highly reactive oxidants, provoking damage in plant tissues, which includes visible leaf injuries, decreased photosynthesis and accelerated senescence and cell death (Vandermeiren et al., 2009). But interestingly, there are pronounced differences in O3 sensitivity between species (Mills et al., 2007). O3 causes a decrease in crop biomass in wheat and soybean, more specifically root biomass, during reproductive and grain filling stages leading to a reduction of overall crop yield. Consequently, global production losses due to O3 in these crops are expected to be higher than losses in rice and maize (Van Dingenen et al., 2009; Avnery et al., 2011; Tang et al., 2013; Feng Z. et al., 2019; Wang Y. et al., 2019).
Climate change is causing the shifting of the rainfall patterns. More intense rainfall producing flooding periods, the appearance of drought seasons and offseason precipitations are expected. In several prediction models, offseason rainfall during critical stages of crop growing could lead to a very significant reduction in crop yield (Lobell and Burke, 2008). In winter oilseed rape it has been reported that a more intense rainfall during autumn and winter periods may boost the appearance of diseases (Sharif et al., 2017). And in maize and soybean, more intense precipitations in spring provoke early damage in young plants (Urban et al., 2015). Another risk associated to more extreme rainfall is the intensification of flooding events. In China or Bangladesh much of the harvest areas are in the flooding threatened regions. Floods put in danger the food security of these countries by destroying cropping areas or delaying crop planting due to high soil moisture (Monirul Qader Mirza, 2002; Xu et al., 2013; Iizumi and Ramankutty, 2015). Moreover, in coming years the flooding risk of coastal regions will increase due to the rising of the sea-level and the alteration of climatology. Seawater flooding of coastal regions is becoming more frequent because waves and storm surges are getting stronger (Vitousek et al., 2017). Osmotic and anionic stress caused by the high salinity of seawater will become an additional problem to crops besides the low O2 and CO2 levels caused by anoxia. It has been shown that oilseed rape plants exposed to seawater flooding conditions suffer a reduction in plant biomass and a fall in productivity due to a lower number of siliques per plant and a lower seed mass (Hanley et al., 2019).
More frequent drought events are also expected due to longer periods without rain added to warmer temperatures. Although droughts restrict cropping areas, the decrease of agricultural productivity is mainly caused by a severe direct effect on crop yield (Saadi et al., 2015; Lesk et al., 2016; Zipper et al., 2016). The most damaging impact of drought stress on crop productivity occurs at reproductive or growing stages. The former produces pollen sterility (as observed in barley) or ovary abortion (as observed in maize) and the latter a reduction in kernel number and biomass (Boyer and Westgate, 2004). In general, a drought period causes a reduction of water consumption by the plant, leading to a stomatal closure and lower CO2 intake. Following decrease in photosynthesis ratio provokes a final reduction of crop biomass (Garofalo et al., 2019). The water scarcity imposed by drought is frequently accompanied by salinity stress. The ion toxicity and the reduction of soil water potential contribute to a severe reduction of plant growth. Soil salinity reduces yield in highly tolerant crops as cotton, barley and sugar beet as well as in crops with high salinity sensitivity as sweet potato, wheat or maize (Zörb et al., 2019).
All these adverse climate effects together with elevated temperature will increase agriculture losses even further (Fuhrer, 2003; Lobell and Burke, 2008; Ainsworth, 2017; Tai and Val Martin, 2017). Numerous studies suggested that global warming will lead to substantial declines in mean crop yields in the next future, and that the most serious agricultural impacts will occur in the tropics, where the majority of the world’s food-insecure population resides (Battisti and Naylor, 2009). Furthermore, mean crop yield will decline and their variability will increase even if interannual climate variability remains unchanged (Tigchelaar et al., 2018). Adding up these and other effects, models show possible yield losses of 6–10% per 1°C of warming in the average temperature of the growing season (Guarino and Lobell, 2011). Moreover, climate variation is already causing a major effect on the stability of crop production. Yields of the top ten global crops–barley, cassava, maize, oil palm, rapeseed, rice, sorghum, soybean, sugarcane and wheat has been affected significantly in different regions all over the world (Ray et al., 2019). In this review we will focus on the effect and consequences of one of the major components of climate change, increased temperature and, in particular, its effect on crop roots (Figure 1).
Figure 1. Mechanisms of temperature sensing and response in plants. Plants sense variations in temperature that are translated into the activation of several physiological and signaling processes. Primary temperature-sensing events start with the alteration of membrane fluidity and composition that causes the activation of calcium (Ca2+) channels. A feedback mechanism between the calcium and lipid signaling through accumulation of PIP2 and IP3, enhances even further the Ca2+ entry in the cell. Several heat shock transcription factors (HSFs) and calcium-dependent protein kinases (CDPKs and MAPKs) are activated by Ca2+ and ROS/redox signaling network. At the same time, the accumulation of unfolded proteins in the endoplasmic reticulum (ER) that are potentially toxic activates the ER stress that sets off the unfolded protein response (UPR), a cytoprotective signaling pathway. Subsequent activation of bZIP transcription factors induces the expression of Heat Shock Proteins (HSPs). HSPs protect proteins from misfolding and subsequent loss of functionality and help the detoxification of ROS. ARP6, a subunit of SWR1 complex, mediates the insertion of the variant histone H2A.Z in the nucleosome. At warmer temperatures, the antagonistic roles of H2A.Z and HSF1 seem to be required to activate heat response (HR) gene transcription. Lastly, the alternative splicing machinery allows the rapid adjustment of the abundance and function of key stress-response components.
Increased Temperature Impact on Crops
As a consequence of global warming, the yield increment that started in the last century is stagnant and even decreasing in some areas (Lobell and Field, 2007). High temperature response has been studied at extreme conditions characterized by the heat shock response. However, even small differences in ambient growth temperature can have profound effects on crop growth and yield. Although abundant literature is available on how plants tolerate extreme damaging heat less is known on how crops adapt to moderately increased or warmer temperatures (Quint et al., 2016; Vu et al., 2019b).
Prediction models reveal that the continuous increment in temperature would result in heavy losses in crop yield at medium latitudes (Liu et al., 2016), whereas less fertile soil areas located at extreme latitudes are getting a more appropriate climate for agriculture (Long and Ort, 2010; Lobell et al., 2011; Iizumi and Ramankutty, 2015; Sharif et al., 2017). Thus, warmer temperature could expand the areas potentially suitable for cropping, increase the length of the growing period, and crop yields may rise in these areas (How to Feed the World in 2050, Rome; FAO, 2009b). However, globally higher temperatures shorten the growth season, letting the crops with a much shorter period to perform photosynthesis even in the case of well irrigated and tolerant crops. Moreover, heat stress directly affects photosynthetic rate accentuating the effect of this shorter growth period. As a result, crops have less biomass to face the anthesis and the consequent grain filling. Warmer environments also affect post-anthesis stages reducing grain growth and promoting fruit senescence. Additionally, the increase in temperature promotes a higher evapotranspiration rate that, ultimately reduce soil moisture and the available water needed for grain filling. When plants suffer extreme temperatures of short duration these processes are even more severely affected (Asseng et al., 2011, 2015, 2019; Liu et al., 2014, 2019; Lesk et al., 2016). Accordingly, it has been reported that in wheat, rice and shorghum heat causes loss of grain yield by shortening its growth period, altering spikelet’s development (number of spikes per plant and spikes size), grains per spike and reducing grain size (Prasad et al., 2006; Jagadish et al., 2010; Fahad et al., 2017). Similarly, in oilseed rape, Brassica rapa and Brassica juncea yield losses are produced by a decrease in seeds per silique and number of siliques per plant as well as defects in pod formation (Angadi et al., 2000; Morrison and Stewart, 2002). High temperatures also lead to a decrease in crop quality by changing seed composition. Thus, in cereals and oilseed crops heat stress reduces the oil, starch, and protein contents of seeds (Jagadish et al., 2015; Fahad et al., 2017). It has been shown that in wheat, increased temperatures reduce the levels of valuable protein whereas it causes the accumulation of proline and soluble carbohydrates (Qaseem et al., 2019). On the other hand, higher temperature also reduces oilseed rape seeds quality by reducing the amounts of oil and increasing the levels of proteins and glucosinolates (Aksouh et al., 2001). In rice, high temperatures during ripening led to the deterioration of grain quality including starch accumulation (Morita et al., 2016; Chen et al., 2017). In brief, crops are substantially but heterogeneously affected by temperature variability (Thiault et al., 2019). To remedy this effect, we need to evaluate and understand further the changes that crops undergo under the future climatic scenario.
Root Response to Increased Temperature
Crops face rising temperatures by triggering a heat response, whose timing and effectiveness will determine if the plants overcome the stress. The effect of increased temperatures on aerial parts of the plants and their responses has been well studied, whereas their influence and response on roots (and root-to-shoot signaling) has been less explored (Wahid et al., 2007). If we attempt to enhance adaptation of crops to severer environments triggered by climate change, we need to take into account below ground traits. For that, first, we need to improve our understanding of the processes regulating the root response to increased temperature.
Plants have a greater water demand in warmer environments due to increased water loss by evapotranspiration and decreased water uptake by the root, causing an overall water deficit situation (Heckathorn et al., 2013). Water uptake takes place in the root either through aquaporins, membrane channels that facilitates water transport inside the cells, or by diffusion through plasmatic membrane (Maurel et al., 2015). Studies with several crops have shown different response of aquaporins and plasmatic membrane fluidity to higher temperatures in roots. Thus, in pepper and wheat, water uptake in warmer soil seems to positively correlate with aquaporin activity (Carvajal et al., 1996; Cabañero et al., 2004), whereas in broccoli (Brassica oleracea var. italica) and maize, warmer temperatures decrease aquaporin quantity and activity but increase membrane fluidity. When temperature is extreme, the membrane starts to rigidify heavily decreasing even more water uptake (Iglesias-Acosta et al., 2010; Ionenko et al., 2010).
Nutrient balance is also altered by changes in temperature. Similarly to water, temperature effect on nutrient uptake varies depending on the crop. In tomato, warmer soils limit root growth and decrease nutrient uptake causing a reduction in macro and micro-nutrient levels (Tindall et al., 1990; Giri et al., 2017). In Agrostis stolonifera, a grass species used as fodder for livestock, the application of high temperature to roots results in a lower number of roots and an increase in the uptake and partitioning of nitrogen, phosphorous and potassium (Huang and Xu, 2000). In Andropogon gerardii, another plant used as fodder, supra-optimal root temperatures cause a decrease in root and shoot growth. Further higher temperatures moderately affects nitrogen uptake but its efficiency use is severely perturbed (DeLucia et al., 1992). In contrast, warm temperature does not alter nitrogen, phosphorus and potassium uptake in maize, but higher temperatures seem to only slightly decrease phosphorus and potassium uptake (Bravo-F and Uribe, 1981; Hussain et al., 2019).
All these negative root responses to increase temperature severely compromise water and nutrient uptake and the consequence is a dramatic reduction on crop yield. Cultivars better adapted to temperature will have to shape their roots to improve their water and nutrient efficiency if they aim to secure yield stability under this challenging environment. As we will ascertain during this review, root organization shows a high plasticity in response to soil changes providing high opportunities for improvement. Better comprehension of the physiological, genetic and molecular mechanisms regulating this plasticity will allow us to develop better adapted crops.
Temperature Sensing and Signaling in Roots
Although it has been proposed that thermomorphogenesis signaling could differs between roots and shoots, a common set of mechanisms of temperature sensing mediate organ response at a molecular and cellular level (Bellstaedt et al., 2019). Plants can sense small variations in temperature, and this sensing can be translated into activation of several physiological processes that are considered the primary temperature-sensing events (Figure 2; Penfield, 2008; McClung and Davis, 2010). Roots sense these thermal changes directly or indirectly. Indirectly sensing is either triggered by the shoot demand of water and nutrient or by the supply of carbon from the shoot to root (Plieth et al., 1999; Heckathorn et al., 2013). Warmer temperatures, and more sharply, high temperature, alter the stability of membranes and cystoskeleton components, as well as proteins and nucleic acids (Vu et al., 2019a). Temperature changes alter membrane fluidity and composition causing the activation of calcium (Ca2+) channels. Increased intracellular Ca2+ triggers the lipid signaling through the lipid-modifying enzymes PLD and PIPK. Subsequent accumulation of PIP2 and IP3, in turn, enhances Ca2+ entry in the cell (Mittler et al., 2012). The Ca2+ influx can activate several heat shock transcription factors (HSFs) and calcium-dependent protein kinases (CDPKs and MAPKs) that control heat stress responses. The ROS/redox signaling network is also mediating plant sensing to high temperature due to direct activation of HSFs and heat related MAPKs. ROS accumulation might be produced as unwanted products of several metabolic pathways due to heat-mediated changes in the stability and activity of their enzymes or by calcium activation of ROS-producing enzyme RBOHD (Suzuki et al., 2011; Rasul et al., 2017).
Figure 2. Root response to increased ambient temperature. Climate change is increasing the ambient temperature altering crops growth. Crops adapt root development and functionality to maintain water and nutrients availability in this stressing environmental situation. These changes in their RSA, include alterations in lateral and primary root growth and root hair elongation, and adjustment of their interchange with aboveground organs. Roots also suffer changes in their metabolism affecting mainly carbohydrate/amino acid balance, lipid metabolism and the activation of heat and oxidative pathways to prevent disruption of root growth. Temperature-mediated alteration of hormone levels trigger signal transduction pathways that prepare plants to overcome the stress situation. Other significant molecular changes that regulate root adaptation include global transcriptomic reprogramming, changes in protein profiles, and activation of epigenetic and chromatin-based mechanisms. In the field, increasing temperature is usually accompanied with other abiotic and biotic stresses such as drought, salinity, nutrient deficiency and pathogen infections. Roots are able to integrate and respond to all these different stress situations to promote their survival and maintain their growth.
Heat stress causes accumulation of unfolded proteins in the endoplasmic reticulum (ER) that are potentially toxic leading to what is known as ER stress. ER stress elicits the unfolded protein response (UPR), a cytoprotective response to mitigate and to protect from this damage (Howell, 2013). The UPR is signaled through two pathways: one involving the proteolytic processing transcription factor bZIP28, and the other involving the ribonuclease IRE1, which mediates the splicing of the bZIP60 transcription factor mRNA (Neill et al., 2019). Both UPR pathways induce the expression of Heat Shock Proteins (HSPs) and activation of brassinosteroids (BRs) signaling (Che et al., 2010). These two pathways seems to be less sensitive than Ca2+ channels because only high temperatures are able to provoke a global unfolding of proteins (Liu and Howell, 2016). HSPs are actively translated during the onset of temperature stress response to protect proteins from misfolding and subsequent loss of functionality. But HSPs also improves membrane stability and detoxification of ROS by regulating several antioxidant enzymes therefore attenuating stress response (Ul Haq et al., 2019).
ARP6, a subunit of SWR1 complex, has been proposed as a histone themosensor. ARP6 mediates the insertion of the variant histone H2A.Z in the nucleosome. H2A.Z nucleosomes wrap DNA more tightly, which affects the ability of RNA polymerase (Pol) II to initiate transcription. At warmer temperatures, H2A.Z is evicted from the nucleosomes located at the transcriptional start of heat response genes (Kumar and Wigge, 2010). This process also required the recruitment of HSFA1 to the promoters of these genes to activate their transcription (Cortijo et al., 2017). Therefore, the antagonistic roles of H2A.Z and HSF1 seems to be require to activate gene expression rapidly and precisely in response to elevated temperature (Wigge, 2013). Lastly, warmer temperature could alter RNA unfolding, metabolism and structure (Su et al., 2018) as well as changes in small RNA expression (Liu et al., 2017). It also causes a recruit of alternative splicing (AS) machinery that will allow the rapid adjustment of the abundance and function of key stress-response components (Laloum et al., 2018). All these pathways trigger different sensing events that contribute to the activation of the overall heat response. This heat response includes a large number of morphological, physiological, metabolic and molecular changes altering root growth that we will describe in more detail.
Morphological and Physiological Response
Roots need an optimal temperature range to have a proper growth rate and function. In general, optimal root temperature tends to be lower than optimal shoot temperature. Crop roots have different optimal root temperature depending on the species. Within this range, a higher temperature is usually associated to altered root:shoot ratio, and a further increase in temperature would limit root development and alter root system architecture (RSA) reducing root:shoot ratio (Ribeiro et al., 2014; Koevoets et al., 2016). RSA is defined as the organization of the primary, lateral, adventitious and accessory roots. Each RSA is determined by parameters such as length, number and angle of these root components. RSA is the main factor that controls nutrient and water uptake efficiency since it determines the soil volume that roots are able to explore at different environmental situations (Lynch, 1995). Generally, the exposure of roots to temperatures higher than the optimal causes a decrease in the primary root length, number of lateral roots and their angle of emergence. Moreover, the increase in temperature causes the initiation of second and third order lateral roots that are characterized by a larger diameter (Figure 3). The negative effect of increasing temperatures usually reduces the surface between root and soil, therefore decreasing nutrient and water uptake (Nagel et al., 2009). In cassava and sweet potato, high root zone temperature significantly decreases the total length of the adventitious roots and the number and total length of the first order lateral roots (Pardales et al., 1999). Seminal and crown roots retarded their emergence and elongation when wheat seedlings are grown at high temperature (Huang et al., 1991a). In maize adult plants, the increase in temperature slows down lateral root growth to promote the development of long axile roots to reach the water of the deeper soil layers (Hund et al., 2008). But in potato, the increase in temperature causes the inhibition of adventitious and lateral roots initiation and elongation. Other effects of the warmer soil in potato are the swelling of the root cap meristem and bending of the root tip. Alteration of root growth in these crops seems to be caused by a decrease in the cell division rate (Sattelmacher et al., 1990; Joshi et al., 2016). Similarly, in sorghum, high root zone temperature reduces the elongation and cell production rate in seminal roots (Pardales et al., 1992). Interestingly, in wheat the increase in temperature causes a decrease in the length and number of central late metaxylem in the root tip. This change has been interpreted as an adaptation to limit damage in the root by the changes in water viscosity and root hydraulic conductance produced by heat (Huang et al., 1991b; Morales et al., 2003).
Figure 3. Response of major root traits to increasing temperatures in crops. Increasing temperature of the soil affects root traits related with its organization, growth and function. Root system architecture defined as the organization of the primary, lateral, shoot-borne and lateral roots is drastically altered in response to increased temperature in the soil (B) compared to plants growing in optimal conditions (A). Crops growing under higher temperatures show shorter primary roots (1), reduction of lateral roots growth and number (2) and their angle of emergence (3), higher number of second and third order roots (4) with larger diameter (5), inhibition of shoot-borne roots (adventitious and nodal roots) elongation and number (6) and increase of root hairs number and length (7). In addition, this overall reduction on root system growth causes a reduction of root:shoot ratio (8) and reduction of root carbon allocation (9). As a consequence of all these changes, nutrient and water uptake conducted by the roots for the whole plant is compromised and crop yield is severely affected. Although most of these effects are detrimental to root growth, some responses alleviate this situation by increasing root:soil surface [increase in number of second to third roots number (4) and number and length of root hairs (7)], improving water efficiency uptake [increase in diameter of roots (5)], or increase in root depth (lower root angle). Interestingly, these root responses coincide with root traits associated with cultivars more tolerant to high temperatures. A comprehensive evaluation of these traits and their impact on crops productivity will help to decide which root traits are more valuable to be incorporated to breeding programs designed to improved crop yield under climate change conditions.
Another strategy used by roots to cope with changing environmental conditions that affect water and nutrient availability is increasing the number of root hairs and their length. This increase enhances root surface area that in turn will improve soil exploration, and therefore, water and nutrient uptake (Pregitzer et al., 2000). Hence, the contribution of root hairs to total root surface area in two crops, oilseed rape and barley increases with temperature. This increase provides their roots with a greater surface area for absorption per unit root weight or length (Macduff et al., 1986). In Arabidopsis and soybean, the lack of root hairs produces reduction in heat adaptation competence suggesting a key role of root hairs in short-term adaptation to high temperatures (Tanaka et al., 2014; Valdés-López et al., 2016). Moreover, since genes that participate in early sensing and adaptation to high temperature are switched off in barley root-hairless mutant plants, it has been suggested a role of root hairs as sensors of environmental soil condition (Kwasniewski et al., 2016).
Communication between aerial and belowground organs seems to underlie heat tolerance and root response in some crops. Several studies made with tomato have shown that the more heat tolerant varieties are those that have a higher root activity or a larger RSA. Wider root system can access to more water and nutrient sources, increasing the water uptake and letting the leaves to increase its evapotranspiration rate, cooling their canopy temperature and improving the photosynthetic rate. This in turn allows that larger quantity of assimilates can be used to boost root growth (Shaheen et al., 2016; Zhou et al., 2019). On the other hand, it has also been observed that carbon translocation from shoots to roots is inhibited at high soil temperatures. Under high temperature field conditions, wheat root growth is diminished due to a reduction in the carbon partitioned belowground, and the number, length and diameter of roots are especially affected (Batts et al., 1998). Similarly, in grape, an increase in the temperature reduces root growth rate whereas shoot growth increases due to alteration of assimilate partition (Mahmud et al., 2018). This sink effect of the aerial part of the plants is mostly observed during the reproductive stage, when the carbon partitioning to the root decreases to help flowering and seed development. In summary, warmer soils cause alteration in RSA and root functionality triggering numerous changes in the whole plant in order to adapt to this climatic variance.
One more aspect of root adaptation that is being increasingly explored is the effect of gradient temperature on root architecture. As soil warming reduces downward, progressively deeper soil layers become better suitable for root growth affecting differentially the upper and lower part of roots (Parts et al., 2019). Thus, roots of barley seedlings exposed to uniform temperature or to a vertical gradient respond with significant differences in terms of biomass production and root architecture (Füllner et al., 2012). Other soil conditions associated with soil temperature that also differentially affect root architecture are soil compaction, nutrient composition and moisture. To respond to all these heterogeneous soil environments, crops produce compensatory effects regarding root system architecture and root growth dynamics. In order to capture the best root ideotypes, successful root mechanisms need to be identified by deep phenotyping in complex soil environments and climates. Ideally these ideotypes not only have to respond to specific growth locations but to different dynamics of the stress since increasing temperatures are to be expected as short heat waves or increase seasonal mean temperatures. Finally, farming practices, including plant density, and water and fertilization regimes that directly impact on root development could be crucial to mitigate the unfavorable effects on roots of higher soil temperatures (Pfeifer et al., 2014; Hecht et al., 2016). In this context, modeling of the root behavior under different scenarios including genotype, environment and management will be need to test root traits value for breeding new varieties adapted to increased temperatures.
Several plant hormones that take part in root development and growth have been described to mediate temperature stress response in this organ. In particular, a role of BRs (Bajguz and Hayat, 2009; Anwar et al., 2018), salycilic acid (SA) (Dat et al., 1998), ethylene (ET) (Lin et al., 2009), abscisic acid (ABA) and cytokinin (CK) (Vishwakarma et al., 2017) has been reported in several crops. Temperature-mediated alteration of these hormone levels trigger signal transduction pathways that prepare plants to overcome the stress situation. Key phytohormones including ABA, SA, and ET increase their levels under heat stress, while others such as CK, auxin (AUX), and gibberellins (GAs), decrease (Talanova et al., 2003; Larkindale and Huang, 2004; Larkindale et al., 2005; Nolan et al., 2017, 2019).
Regulation of root response to temperature is mediated by BRs signaling in Arabidopsis. Increased growth temperature reduces the level of the BR receptor BRI1 to downregulate BR signaling and increases root elongation independently of auxin (Martins et al., 2017). Interestingly, it has been proposed that downregulation of BR signaling by temperature elevation could promote GA-dependent root growth. In contrast, in crops, different behavior of BRs has been reported. The application of 24-epibrassinolid (24-EBR), a functional BR, to tomato and oilseed rape seedlings inhibits root elongation in both species but increase their acquired thermotolerance. Molecular analyses of 24-EBR treated and untreated seedlings show that this thermotolerance is a result of increased levels of HSPs (Dhaubhadel et al., 1999, 2002). On the contrary, transgenic lines of oilseed rape overexpressing AtDWF4, an Arabidopsis gene encoding an enzyme that catalyzes a bottleneck step in BR biosynthesis, shows an increased root length and fresh and dry root weight. However, the transgenic plants show an increased thermotolerance, and consistent with the results in tomato and oilseed rape, the level of different HSPs gene family members were increased (Sahni et al., 2016).
Improved plant tolerance to heat stress mediated by SA has also been reported in crops (Khan et al., 2015; Nazar et al., 2017). In soybean, wheat, maize and chamomile, this tolerance seems to be mediated by the growth-stimulating effects of SA (Rivas-San Vicente and Plasencia, 2011). Additionally, exogenous SA has a protective role in mitigating extreme temperature-induced damages in different crops (Hasanuzzaman et al., 2017). In grape cultivars root-derived SA have a role in the response to aboveground high temperature. The increase in temperature did not affect free SA content in roots but reduced the levels of conjugated SA, a storage form of this hormone. It is proposed that the sensing of warmer temperatures causes roots to send its conjugated SA reserves to the aboveground parts of the plant where is transformed into free SA to promote the adaptation and resistance to heat stress (Liu et al., 2008).
ET also takes part in root adaptation to increased temperatures. ET production is increased under heat stress, although exogenous ET application cannot confer heat tolerance (Müller and Munné-Bosch, 2015). Nevertheless, thermotolerance is enhanced in rice seedlings under heat stress by an increase in the levels of ET (Wu and Yang, 2019). In sorghum, heat induced inhibition of root elongation and cell production rate is affected by ET levels (Prasad et al., 2008). Likewise, in lettuce, temperature promotes the synthesis of ET. Moreover, exogenous ET application to the root causes heat stress symptoms including reduced root length and surface area and increased root diameter. Application of ET biosynthesis inhibitors to plants exposed to heat alleviates the root growth inhibition. Interestingly, ET effect in this crop has been linked to a similar root-to-shoot communication mechanisms described for SA signaling. Higher ET biosynthesis produced by increased temperatures causes an efflux of ACC, the ET precursor, to the shoot via xylem. ACC then promotes thermotolerance in aboveground tissues by the reduction of oxidative damage and maintenance of chlorophyll content (Qin et al., 2007).
ABA is one of the main hormones to control tolerance to abiotic stress and its biosynthesis is promoted by these stresses also in roots. In cucumber, the application of higher temperature to the whole seedling increases the levels of ABA in both leaves and roots (Talanova et al., 2003). ABA seems to improve heat tolerance through exogenous application or by manipulation of ABA-related genes in some crops. This tolerance is achieved by increasing leaf photochemical efficiency and membrane stability or by induction of HSF (Abass and Rajashekar, 1991; Zhou et al., 2014; Wang et al., 2017). ABA also seems to increase root hydraulic conductance and promote root hair development during adverse environmental situations (Vishwakarma et al., 2017) and it has been suggested as a potential candidate of root-to-shoot communication (Talanova et al., 2003).
CKs are one of the key regulators of root system architecture and they have been implicated in heat stress. In contrast to their role in promoting growth in the shoot, CKs reduce root growth, by inhibiting primary root elongation and promoting cell differentiation in the root apical meristem (Dello Ioio et al., 2008). They are also regulators of root branching (Chang et al., 2015). A decrease in CK levels or a reduction in CK signaling can lead to an enlarged root system improving temperature root response (Bielach et al., 2017; Kieber and Schaller, 2018). Contrarily, stress driven alteration of CKX1 levels in roots, a CK oxidase/dehydrogenase (CKX) enzyme that regulates CK degradation, results in enhanced drought and heat tolerance in tobacco. The enhanced stress tolerance of these plants has been correlated with raised bioactive CK levels during the early phase of the stress response (Macková et al., 2013).
In summary, several hormones are known to control root growth and are in charge of controlling this process during high temperature stress. Modulation of hormonal signaling in roots in response to heat not only prepares this belowground organ to respond to this stress but also the whole plant since some hormones like SA, ET and ABA could act as intercommunication signals between the root and the aboveground organs.
During heat stress, plant roots suffer large quantity of metabolic changes to maintain homeostasis and allow the plant to survive. It has been suggested that overall alteration of metabolic pathways probably depend on the sensitivity to high temperature of key metabolic regulatory enzymes. Different studies carried out in crops and fodder species shows a common pattern in the response of primary and secondary metabolism to heat stress in roots. Main carbohydrates such as glucose, fructose, galactose, sucrose or xylose are usually lower after the root experience high temperatures, as well as the levels of several glycolytic cycle enzymes (Ribeiro et al., 2014; Aidoo et al., 2016; Sun et al., 2016). In, cassava, warmer soils inhibit starch biosynthesis through the direct decrease of enzymatic activity or down regulation of transcriptional levels of the main starch biosynthesis enzyme (Ma et al., 2018). Other sugars and polyols such as raffinose, galactinol, and glycerol that has been described as stress tolerance compounds increase its content during stress conditions (ElSayed et al., 2014; Salvi et al., 2018). In contraposition of down-accumulation of carbohydrates, some amino acids seem to be accumulated during heat stress. This negative correlation between sugars and amino acid appears to be provoked by the inhibition of carbon assimilates supply to the roots during heat stress. One of the accumulated amino acid is proline, an osmoprotective compound, used to avoid molecular and cellular damage during stress situations (Szabados and Savouré, 2010). Increase temperature also regulates significantly lipid metabolism probably associated to the cell membrane rigidity needed to counteract the fluidity provoked by warmer soils. Thus, fatty acids, phospholipids and glycerolipids shows a reduction in their accumulation after exposing the plant to heat stress together with TCA cycle intermediaries and related enzymes (Ribeiro et al., 2014).
There is fewer and fragmentary data concerning secondary metabolism response to rising temperatures in roots. In maize, increase in temperature causes a decrease in the level of secondary metabolism compounds such as fitosterols and terpenoids (Sun et al., 2016), but in castor bean, although β-sitosterol levels decrease, campesterol storage is increased. The levels of other metabolites like tocopherol, squalene and ricinine, also change in response to heat.
During heat stress, as with other stresses, the intracellular levels of ROS increase sharply. Although it could act as a signaling molecule, higher levels of ROS cause damage at cellular level and interfere with protein and enzymatic activities and gene expression. It has been reported in several crops that the high temperatures promote the expression of ROS scavenging enzymes such as catalases (CAT), peroxidases, superoxide dismutase (SOD) and ascorbate peroxidase to counteract ROS damage (Gill and Tuteja, 2010). Glutathione (GSH) has been described to take part in thermotolerance in eukaryotic organisms by scavenging ROS (Colville and Kranner, 2010). Under heat stress, roots use cysteine to synthesize GSH that could increase the thermotolerance of these organs (Nieto-Sotelo and Ho, 1986). NO and H2S are two gaseous molecules that act as signaling compounds during different developmental processes, including root morphogenesis, and stress situations, like heat stress. It has been described for both molecules that its external application confers thermotolerance in both shoot and roots (Li et al., 2013; Singh et al., 2019).
Altogether, significant changes in metabolism in response to high temperature have been reported in different crops directed to alleviate the damage triggered by this stress. Although significant information in this process has been conveyed from several groups, the complete picture of how temperature regulates metabolism in roots is far from been complete. A substantial effort in the study of this regulation will be needed to understand how metabolic changes are integrated in the overall response of roots to this stress.
Genetic and Molecular Regulatory Pathways
High temperature triggers significant molecular changes in plants, including global transcriptomic reprogramming and changes in protein profiles, to adjust plant growth to this stressing environmental situation. A large number of transcripts and proteins alter their expression and levels in response to heat stress in roots. From these changes, a pattern of stress response reflecting the physiological, morphological and hormonal changes that we have previously described could be drawn. Thus, most of the differential transcripts and proteins represent genes that are involved in primary and secondary metabolism, such as genes related to ROS scavenging, as SOD or CAT and GSH synthesis to sugar and flavonoid biosynthesis; from calcium and signal transduction kinases to proteins related with the regulatory pathways of several hormones (such as ET, SA, JA, ABA, and CK); or from lipid signaling to heat shock proteins and factors (Bita and Gerats, 2013; Valdés-López et al., 2016; Jia et al., 2017; Carrera et al., 2018; Wang et al., 2018a, b).
Activation of HSPs and HSFs gene families seems to be a universal response to high temperature being found in all organisms from humans to plants. Consequently, several of these genes encoded proteins have been associated to thermotolerance in different crops. In wheat, HsfA6f overexpression enhances thermotolerance through the induction of several HSP and heat responsive genes. It also activates raffinose and galactinol biosynthesis enzymes and ROS scavenging enzymes by binding to the heat shock elements in the promoters of these genes (Xue et al., 2015). In many plant species, response to heat stress is particularly dependent upon induction of HSP70 and HSP101 (Queitsch et al., 2000). In maize, HSP101 regulates root elongation in both normal conditions and mild-heat stress and is needed during germination to balance growth and tolerance establishment (Nieto-Sotelo et al., 2002). Interestingly, it has been observed that differences in thermotolerance between rice cultivars could be mediated also by differences in HSP101 and HSA32 protein levels (Lin et al., 2014). Similarly, in pepper cultivars, HSP25.9, a HSP20, could also be mediating thermoresponse by reducing the accumulation of ROS, enhancing the activity of antioxidant enzymes and regulating the expression of stress-related genes (Feng X. H. et al., 2019).
Heat response encompasses different regulatory gene networks involving specific set of transcription factors, protein kinases and other signaling related proteins (Ohama et al., 2017). In several crops, specific families of transcription factors are candidates to mediate heat stress response in roots. Thus, HD-ZIP and NAC transcription factors are induced by heat stress in potato and radish (Karanja et al., 2017; Li et al., 2019). In batata, ABF4, an ABA-responsive element binding factor that is up-regulated under heat stress promotes the expression of several stress responsive genes and mediate root elongation response (Wang W. et al., 2019). In rice, ZFP350, a Zinc Finger Protein (ZFP) transcriptional factor, is specifically expressed in roots and up regulated by heat. ZFP350 seems to control root response to high temperatures by promoting the expression of stress responsive genes like HSP70 (Kang et al., 2019). In tomato, a GRF transcription factor, GRF6, is regulated by several stresses including heat through a hormonal mediated pathway (Khatun et al., 2017). Another group of important regulatory proteins that are induced after heat sensing are diverse kinases such as CDPKs or MAPKs (Wang et al., 2018a). A putative rice orthologue of Brassinosteroid insensitive 2 (BIN2), a glycogen synthase kinase3-like gene 1 (GSK1), that acts as repressor of BR signaling seems to mediate heat tolerance in roots (Koh et al., 2007). In pepper, WAKL20, a wall associated RLK-like (WAKL) kinases acts as a negative regulator of thermotolerance by down regulating ABA–responsive genes that in turn decrease plant ABA sensitivity during root growth (Wang H. et al., 2019). Other signaling pathways involving hormone responses are those related with Proline Rich Proteins (PRPs). This family of proteins has been described in several crops as part of root developmental and stress response processes. RCc3, a rice root specific PRP, improves RSA during heat stress by promoting auxin efflux, biosynthesis and accumulation in the roots (Li et al., 2018).
Stress response mediated by increased temperatures also alters several proteins levels through post-translational modifications (Ahmad et al., 2016; Wu et al., 2016; Kosová et al., 2018). These post-translational modifications included phosphorylation, sumoylation or ubiquitination events. For example, the differential phosphorylation levels of two isoforms of fructose-biphosphate aldolase seems to underlie the contrasting heat tolerance in roots of two C3 grass Agrostis species, A. scabra and A. stolonifera (Xu and Huang, 2008). Also sumoylation levels are altered in several crop roots under heat stress pointing to this protein modification as part of the root response to high temperatures (Augustine et al., 2016; Li X. et al., 2017). Finally, in tomato, ShATL78L, a RING finger protein, enhances multiple abiotic stresses tolerance, including heat, by interacting with a subunit of COP9 signalosome complex and therefore altering ubiquitin-mediated protein degradation (Song et al., 2016).
In recent years, several epigenetic and chromatin-based mechanisms have been implicated in the regulation of heat responsive genes and their function but few examples have been described in crop roots. These epigenetic mechanisms include DNA methylation, histone modifications, histone variants such as the previously mentioned H2A.Z variant, small RNAs and miRNA (Kim et al., 2015; Liu et al., 2015; Lämke and Bäurle, 2017; Saraswat et al., 2017). In rice, several microRNAs show a differential expression in roots of contrasting heat response cultivars. Similarly, in barley, a heat-induced increase in miR160a, down-regulates the expression levels of ARF17 and ARF13, which could affect shoot morphology and root growth (Kruszka et al., 2014). In maize roots, the expression and acetylation levels (histone 3 lysine residue 9, H3K9; and histone 4 lysine residue 5, H4K5) of two genes related to lateral root development (HO1 and GSL1), are decreased under heat stress suggesting a mechanism mediated by up-regulation of histone acetyltransferases (HATs) in the root response to this stress (Zhang et al., 2018).
In summary as we have described briefly, there are an increasing number of regulatory mechanisms that are being implicated in the control of heat response in root of different crops. Although there are still many gaps in our knowledge of how all these mechanisms work, all this mounting information will be crucial to expand the set of molecular targets that could be used to improve heat tolerance in crops.
Increased Temperature Associated Root Traits
Breeding of new cultivars able to overcome the challenging new environmental conditions driven by climate change must incorporate traits regarding root architecture (Koevoets et al., 2016). The potential of roots to boost crop productivity has been establish in several studies where correlations between root traits and yield have been determined (Bray and Topp, 2018; Robinson et al., 2018; Jia et al., 2019). This close relation is confirmed by the co-ocurrence of QTLs for root traits and grain yield and other agronomic traits associated to productivity in different crops (Maccaferri et al., 2016; Ju et al., 2018). Root traits like deep rooting or root angle seem to increase vegetative growth and subsequent grain filling but are also context dependent. Deep root systems developed in limiting water conditions increase grain yield by providing access to residual water in deeper soil layers (El Hassouni et al., 2018). Additionally, root length has been correlated with flowering traits in different crops but how this association takes place is not well known (Voss-Fels et al., 2018). Similarly, several above-ground traits are influenced by root behavior under different stress conditions including high soil temperatures (Batts et al., 1998; Arai-Sanoh et al., 2010). All these studies highlight the idea that a complete plant phenology has to be taken into account when root traits are selected for breeding for adaptation to avoid yield penalties.
As we have seen, roots are very plastic to environmental conditions and display a large range of highly variable physiological and morphological traits to adapt root architecture and functionality to disadvantageous conditions. Classical breeding trials were designed to select for cultivars with high yield using non-limiting nutrients and non-challenging environmental conditions which has often led to selection for smaller and less plastic roots (White et al., 2013). Moreover, modern cultivars have relied on the monitoring and selection of above-ground traits looking for increasing biomass into the shoots rather than into the roots, that it turns has selected for smaller root sizes and root:shoot ratios (Waines and Ehdaie, 2007; Friedli et al., 2019). As a result, root traits have been usually downplayed in breeding programs but numerous studies have shown the correlation of root traits with enhanced tolerance and productivity in different crops species (Den Herder et al., 2010). These studies highlight the potentiality of root traits as tools for breeding high tolerant crops (de Dorlodot et al., 2007). Heat stress tolerance as other abiotic tolerance seems to be a multigenic trait and the candidate genes are poorly known. Root traits are genetically complex and more difficult to measure (Wasaya et al., 2018). Everything considered, improving this stress tolerance in root crops is a very limiting step in plant breeding. Roots are challenging to evaluate in the soil and this has been a major reason for the poor attention that they have been paid in breeding programs in the past. Numerous methods of phenotyping have been used, from laboratory-based methods including the use of soil-free media pots, rhizoboxes, hydroponics or semi-hydroponics media combined with high-throughput digital phenotyping or 3D imaging systems (Walter et al., 2015; Voss-Fels et al., 2018; Jia et al., 2019; Ma et al., 2019; Qiao et al., 2019) to field shovelomics (Trachsel et al., 2011). But still all these methods are generally expensive or/and time-consuming, so better and affordable tools to improve analysis of root traits are still needed. Nevertheless, significant information of root adaptation to changes in temperature has been provided by exploiting genetic variation associated to root traits.
Genome-wide association studies (GWAS) have been widely used during the last few years to identify loci on tolerance to extreme temperatures in crops (Hu et al., 2017; Maulana et al., 2018; Jamil et al., 2019; Jia et al., 2019; Oladzad et al., 2019) or root architecture (Li X. et al., 2017; Li Y. et al., 2017) but analyses focused on root response to temperature are still lacking. Similarly, QTL mapping has been used to narrow down regions of crop genomes related to root architecture (Gong et al., 2015). Although several studies has identified, mapped and predicted potential genes candidates for QTLs associated with heat or high temperature tolerance in several crops like tomato (Wen et al., 2019), maize (Van Inghelandt et al., 2019), barley (Arifuzzaman et al., 2014) and wheat (Sharma et al., 2017), very few have been focused on root related traits. Thus, in wheat, QTLs for cooler canopy temperature (QTL-CT) are associated to a higher number of superficial roots compared to deep roots (Pinto and Reynolds, 2015). QTL analyses also in wheat show a coincidence of a QTL for heat and drought tolerance suggesting a common genetic basis for adaptation to both stresses. This QTL seems to be associated with changes in root distribution to increase water availability (Pinto et al., 2010). Likewise, a later analysis in wheat to identify meta-QTL associated with adaptation to drought and heat stress, shows that a large number of QTLs are shared to both heat and drought response and two of them are associated to higher root length (Acuña-Galindo et al., 2015). Similarly, in rice, studies with recombinant inbred lines (RILs) obtained from crosses between heat tolerant and non-tolerant cultivars have identified QTLs associated with root length under heat stress (Ps et al., 2017; Kilasi et al., 2018), and in barley, two heat-stress QTLs are adjacent to a QTL reported for root length and root-shoot ratio (Gous et al., 2016). In maize, association mapping studies between inbred lines with different heat tolerance show a significant effect on lateral and axillary root elongation rates in these genotypes (Trachsel et al., 2010; Reimer et al., 2013). Interestingly, this change on root architecture coincides with the proposed maize ideotype for the root system which represents steep and deep roots, and reduction of the metabolic cost of soil exploration (Lynch, 2013; Gong et al., 2015). Altogether these analyses reinforce the idea that better developed roots help the plant to increase the water intake during heat stress that in turn increases the evapotranspiration rate and decreases the aboveground temperature allowing a better photosynthetic ratio and crop yield. However, the optimal RSA could be different in each targeted environment and breeding efforts have to account for these differences. Moreover, some of the adaptive root traits are only conveyed when roots are under specific stresses making phenotyping and evaluation of root traits even more challenging (Alahmad et al., 2019). Thus, drought induced deep rooting that reduces root growth in upper soil layers compare to shallow roots is an effective strategy when heat is combined with low moisture soil but has yield penalties in moisture rich soils (Comas et al., 2013; El Hassouni et al., 2018). Combination of context dependant or independent root traits has been proposed as solution for adaptation to target multiple environments. For that purpose, analysis of natural variation and wild relatives have been used to uncover some of the processes underlying either root growth or responses to temperature changes. New root trait alleles would be uncovered using this strategy but the effectiveness of these tools to analyze root response to increase temperature in crops is yet to be explored (Ristova and Busch, 2014; Blackman, 2017; Driedonks et al., 2018; Ristova et al., 2018; Wang et al., 2018c).
In summary, the information gathered from all these studies has been very useful to shed light onto some of the possible strategies adopted by the roots to confront temperature stress. These strategies include primarily alteration of RSA and adjustments of their interchange with aboveground organs. However, there are still many other avenues to extensively exploit the plasticity of the roots. In modern agricultural system, crops are highly densely planted and root traits related with root angle or root occupancy could be highly valuable (Meister et al., 2014; Hecht et al., 2016). In cereals, with a root system that changes during their lifespan (postembryonic root are different from embryonic roots), a multi-trait approach considering all root types will be needed to uncover useful genotypes. Lastly, root traits identifyed on multi environmental field trials considering complex and concomitant soil conditions seems a very promising approach to adapt root system of crops to climate change.
Root Responses to Temperature Associated Abiotic and Biotic Stress
In field conditions, under the predicted climate change scenario, the increase in temperatures is usually accompanied by an enhanced evapotranspiration of soil and plants following by an increase in drought incidence and soil salinization. Additionally, higher temperatures could lead to an increased virulence and expansion of crop pathogens (Mahalingam, 2015). Therefore, in order to improve root adaptation in crops we need to consider how combined stress responses affect root growth (Figure 4; Koevoets et al., 2016).
Figure 4. Effect of increasing temperature and associated abiotic stresses on root growth. In the field, the increase in temperatures driven by climate change is normally accompanied by water deprivation provoked by enhanced evapotranspiration of the soil and plants. Moreover, increased soil salinization and changes in the nutrient composition of the soil further compromise plant growth. Roots are essential for water, ions and nutrient uptake therefore the adverse effects on roots of these combined stresses as is summarized in this figure, directly affects crop productivity on the field. New crops with improved root response to a variety of biotic and biotic stresses will be needed to maintain yield stability under the changeable environmental conditions driven by climate change.
Water is one of the most limiting factors for crop growth and its availability is determined by weather, soil structure and root uptake. Root growth response to water deprivation usually includes inhibition of lateral root growth and enhancement of primary and secondary root growth. But when scarcity of water is more severe a drought avoidance program is deployed to direct root growth and branching into regions of soil where these resources are more abundant (Dinneny, 2019). ABA and auxins regulate this hydropatterning response (Orosa-Puente et al., 2018). Interestingly, a major rice QTL for the control of deep rooting, DRO1, modulates yield under drought stress by affecting root growth angle (Uga et al., 2013). Severe drought conditions, in addition to higher temperatures, provoke a strong inhibition on root respiration rate and growth as well as a reduction in the partitioning of carbon assimilates to the roots (Prasad et al., 2008). The root response to the combined effect of heat and drought could vary depending on the crop and the developmental stage. Thus, root growth seems to be directly affected by water deficit and temperature to a greater extent in C3 than C4 crops. Sunflower, a C3 plant, responds to the combined stress situation by partitioning carbon assimilates to the root to promote growth and ensure water availability. In maize, a C4 plant, increased temperature inhibits root elongation (Killi et al., 2017). In barley, plants at heading stage seem to be more sensitive to both stresses than plants during vegetative growth, and plants that show greater carbon assimilates partitioning to the root during heading also show lower yield and lower quality traits (Mahalingam and Bregitzer, 2019). In tomato, heat stress causes an increase in root activity that is translated into an increase in water uptake. But this response is reversed when this stress is combined with drought. In addition, the combination of both stresses accelerates the harmful effects of each stress (Zhou et al., 2019). At cellular level, the combination of heat and drought causes oxidative stress (Zandalinas et al., 2018). Roots exposed to these conditions accumulate more proline and increased expression of antioxidant enzymes to suppress the potential molecular damage (Selote and Khanna-Chopra, 2010; Sekmen et al., 2014). Lastly, interesting information could be deducted from the ability of some plants such as members of the Cactaceae family to grow in arid desert that combine both stresses. Root traits from these plants includes the iterative senescence of the primary root tip, which facilitates rapid branching and shallow root system growth during the rare precipitation events occurring in the desert (Shishkova et al., 2013).
Soil salinization is a major threat that negatively affects crop productivity. Salinity impairs plant growth and development via water stress and cytotoxicity due to excessive uptake of ions such as sodium (Na+). Additionally, salinity is typically accompanied by oxidative stress due to generation of ROS (Isayenkov and Maathuis, 2019). Contrary to what happen with heat, roots are more resistant to salt stress than leaves, but this stress still severely inhibits root growth and provokes damages and alterations in the RSA (Robin et al., 2016). These alterations seem to depend on the crop. Thus, in wheat, root elongation is promoted by the combination of heat and drought but high salinity alone inhibits root growth. Furthermore, when plants were treated with salt and heat, the inhibition caused by the salinity was stronger (Keleş and Öncel, 2002). Similarly, in barley, root growth is severely inhibited and ROS levels sharply increase. To counteract this response, plants accumulate a great quantity of proline and other osmoprotectants, and increase the expression and activity of ROS scavenging enzymes. SA may have a role in this tolerance process by promoting the biosynthesis of osmoprotectants and regulating the activity of several ROS scavenging enzymes (Torun, 2019). On the contrary, in tomato, heat seems to alleviate salinity damage by increasing evapotranspiration and photosynthetic rates. The combination of both stresses also seems to alter the uptake, transport and accumulation of Na+ and K+. So, under heat and salinity stresses, tomato accumulates Na+ ions in the root in order to decrease the level of this ion in leaves and evict photosynthesis alteration (Rivero et al., 2014).
Nitrogen levels in soil also affect root viability, thereby higher or lower nitrogen levels than optimum negatively alters root growth. Additionally, proper N availability is important for plant resistance to stress conditions. In warm soils during spring, roots have to mobilize nitrogen reserves to respond to increased plant growth demand including enhanced root growth. Therefore, it has been suggested that supplying N to the soil could mitigate the effect of temperature on root growth in a similar way (Waraich et al., 2012). Application of nutrients like N, K, Ca, and Mg seems to reduce the toxicity of ROS whereas K and Ca improve intake of water and help to maintain high tissue water potential. One challenge to enhance nitrogen efficiency in crops is to understand how lroots respond to low nitrogen and how the modulation of root architecture is coordinated to maximize nutrient acquisition in variable ambient temperatures. Positive or negative coincidences between N uptake and heat tolerance have been observed in different species (Yan et al., 2012; Giri et al., 2017). Thus, N availability influences HSP levels in maize (Heckathorn et al., 1996) and in the perennial grass, Agrostis stolonifera. Combination of nutrient deficiency with higher temperatures in soils, further alters HSP synthesis (Wang et al., 2014).
A major constrain for crop productivity is the deficiency of resources, water and nutrients, in the soil surrounding the root system. As we have seen, roots alter their physiology and morphological traits to increase their efficiency when it is compromised by environmental conditions as increased temperature or a combination of stresses. This root multi-adaptive response need to be incorporated in the breeding of new cultivars to increase their adaptation to unstable climates.
Environmental conditions profoundly affect plant disease development; however, the underlying molecular bases are not fully understood. Weather plays a large role in determining the outcome of plant–pathogen interactions, and disease epidemics are more likely to occur when environmental conditions are detrimental for the plant. For example, it is known that temperature fluctuation is a key determinant for microbial invasion and host evasion. Thus, there is an observed pattern of movements driven by global warming effects on crop pathogens and pests, and/or on the availability of crops to cope with them (Bebber et al., 2013). Other outcomes of warming temperatures are that new pathogen strains better adapted to these temperatures may become prevalent and the rise of more aggressive plant disease vectors (Velásquez et al., 2018). High temperature enhances plant disease susceptibility, attenuating disease resistance and promoting pathogen growth (Fujita et al., 2006; Huot et al., 2017). Several mechanisms seem to be implicated in this effect. Increase in temperature causes a decrease in the elicitor detection by the plant and the breakdown of effector-triggered immunity (de Jong et al., 2002; Alcázar and Parker, 2011; Cheng et al., 2013; Hua, 2013). Examples of this effect in roots have been already described. Changes in weather conditions including increased mean winter temperatures have favored infection by several Phytophthora spp. species that are responsible for increasing amounts of root rot in forest trees (Jung and Burgess, 2009; Sturrock et al., 2011). Additionally, other soil-borne root diseases seem to be more severe under increased temperature conditions (Elad and Pertot, 2014). Plant response to pathogens and adverse environmental conditions is challenging. Since both responses share many components, plants need to trigger a balanced response between the tolerance and defense response. In fact, mounting evidence suggests that hormone signaling pathways regulated by ABA, SA, JA and ET, as well as MAP-kinase cascades and ROS signaling pathways, play key roles in the crosstalk between biotic and abiotic stress signaling such as heat (Chen et al., 2015; Zhai et al., 2017). In this context, stress caused by temperature has been shown to negatively affect the plant ability to respond to pathogens through changes in ABA levels that influence defense responses involving SA, JA, or ET (Asselbergh et al., 2008). An emerging field in abiotic and biotic interaction is that involving plant–microbiome interaction. Disease-suppressive soils with enrichment in specific bacterial clades are able to protect against soil-borne pathogens including fungal root pathogens (Mendes et al., 2011; Philippot et al., 2013). But the alteration of the microbiome and the reduction in number and diversity caused by higher soil temperature could lead to the loss of pathogen suppression capacity of the rhizobiome (Mendes et al., 2011; van der Voort et al., 2016). Although much work is still to be made to understand the crosstalk between environmental conditions such temperature and pathogen interaction in plants, there is an urgency to produce disease-resistant crop plants that are resilient to climate change.
Crop breeding programs are incorporating the response to a combination of different stresses in the evaluation of new varieties. This type of analysis although challenging due to the requirement of multi-environment field trials, are becoming a necessary requisite to assess the real value of the traits to be integrated in the varieties. This is especially relevant in the context of root traits given the high plasticity of the RSA to changes in the environmental conditions and composition of the soil. Root traits aimed to improve the stability of crop productivity have to be able to respond favorably in all the environmental contexts.
Challenges and Future Solutions
Humanity’s main challenge of this century is to feed the growing population in a context of climate change. Between 2030 and 2050 the population will have increased to 9,000 million people whereas global temperature will have increased between 1.5 and 2°C. The alteration of climate and the more common appearance of extreme events, in addition to higher temperatures, will negatively affect crop yield. Global food security would be endangered resulting in the increase of food prices and food shortages, and in consequence increasing global hunger, poverty and inequality. So, it is of paramount importance the improvement of crop tolerance to abiotic and biotic stresses in order to confront climate change effects.
Root traits still withhold the potential to reach this goal, but first the extensive existing phenotypic variation in these traits must be studied and analyzed (Figure 5). Moreover, the improvement of root capability might help to mitigate the harmful effect of agriculture on environment. Better root performance could reduce the water used for irrigation during heat waves or the massive fertilization of fields. On the other hand, root development and capacity should be improved without sacrificing other traits regarding aboveground development or yield. How temperature related changes in root architecture might affect the aerial part of the plant is not well understood and in particular, the signaling from the root to the shoot (or vice versa) in order to prepare the whole plant for the heat stress. Having a better comprehension of the genetic and molecular regulatory pathways underlying root-to-shoot interaction under stress condition could be useful to improve root performance without altering shoot development related traits.
Figure 5. Challenges and potential solutions to improve crop root adaptation to climate change. Global alteration of climate in addition to higher temperatures will negatively affect crop yield. There is an urgent need to improve and maintain crop productivity under these climatic constrains and root traits withhold the potential to reach this goal. In order to confront climate change effects we still have to overcome a few challenges, largely concerning the necessity to increase our knowledge of different aspects of the root adaptation process. New solutions bringing together technical and conceptual advances in the analysis of root traits will drive this advancement.
Another challenging aspect to consider is that the temperature of the soil is not uniform, but it maintains a gradient that decreases with depth. This gradient varies depending on the soil composition, a factor contributing to heat conduction and convection. Consequently, the temperature of the soil, and the root, decreases with depth increasing the complexity of root response to heat and its study. The complex relation between the root and the soil increases even more when the role of the rhizosphere is added to the analysis. The potential effect of the rhizosphere to defend or prepare the plant against biotic and abiotic stresses is little explored. Unraveling the complex interaction between the rhizobiome and the root, during heat stress at a molecular and cellular level is essential to understand whole-plant heat tolerance processes. As we have seen throughout this review, in the changing climatic condition, the different stresses do not occur separately but very often they appear together. How plants response to several stresses simultaneously is a poorly understood process especially in roots compared to the information gathered from aboveground tissues. Better understanding of plant response to each stress or its combination is primary to develop more tolerant crop varieties. In brief, there is still a lot of work to be done to obtain potential applications and improvements of root tolerance not only to heat stress but also to other biotic and abiotic stresses.
A first approach to tackle the effect of climate change on crops and at the same time lessen the impact of agriculture is the improvement of agronomic management practices and the use of precise farming. A more efficient use of nitrogen and phosphate fertilizers as well as water could reduce their use in the field. This strategy could help to alleviate the soil deterioration caused by these fertilizers and contribute to reduce water scarcity and pollution. In this context, the optimization of root efficiency in nutrients and water uptake and distribution could lead to a better fertilizer and water management. Better root systems provided by cover crops could be useful in managing and preserve soil quality and soil moisture. Moreover, the use of leguminous plants as cover crops could also be use as a fertilization method due to its symbiotic relationship with nitrogen fixation bacteria. Additionally, the use of better or new agronomic techniques could help to alleviate the increase in soil temperature. For example, no-tillage seems to be beneficial to avoid, or at least, decrease heat stress in root (Wang et al., 2007). Lastly as commented in the previous section, the tailored application of N to the soil could enhance root growth alleviating heat effects.
One of the emerging strategies to approach the use of root traits to fight global warming and its effects on crop yield is the use of the rhizobiome. Plants are able to adjust rhizobiome composition through root exudates that could stimulate the growth of beneficial microorganism in the rhizosphere (Vives-Peris et al., 2018). But changes in soil characteristics lead to a change in root exudates and, in consequence, a change in rhizobiome composition (Philippot et al., 2013). Specific bacteria have been described to enhance plant tolerance to biotic (Santhanam et al., 2015) and abiotic stresses (Rolli et al., 2015). In fact, increased temperature leads to alterations in root exudates that promote some beneficial bacteria that could improve crop survival in this condition (Ali et al., 2011). Harnessing the beneficial interaction between the root and rhizosphere has the potential to improve crop tolerance to various stresses (Ahkami et al., 2017). Moreover, the use of symbiotic or non-symbiotic fungi isolated from plant species that grow in inhospitable environments to provide crops with tolerance to several stresses is also being explored (Singh et al., 2011).
Another focus of attention in the field of root adaptation is the use of temperature adapted wild relatives and landraces. During the domestication of crop species, the main traits selected were those related to a greater yield and quality. In this process the loss of root traits related with stress tolerance probably has happened. Crop wild relatives are a source of genetic diversity of natural evolved root traits including root adaptation to stresses. By analyzing the genome of these plants, the evolutionary pathways taken to gain these traits could be understood and applied in breeding programs. Analyses of crop wild relatives have already shown that their genetic variability is a great field to exploit in breeding programs centred on obtaining new crop varieties with tolerance to diverse stresses (Dempewolf et al., 2010, 2014). For example, wild relatives of pigeon pea (Cajanus cajan) and wheat has proven to be a source of genetic resources and traits to improve the tolerance of their related crops to stress conditions (Zaharieva et al., 2001; Khoury et al., 2015; Von Wettberg et al., 2018). In addition to wild relatives, crop landraces are a great source of genetic variability for their adaptation to specific ecosystems and climatic conditions (Cantalapiedra et al., 2017; Carvalho et al., 2017; Sani et al., 2018). On the other hand, latest studies with orphan crops have demonstrated that those crops are a powerful tool to improve their related global-traded crops due to its resistance against unfavorable conditions (Song et al., 2019; Tadele and Bartels, 2019).
Traditionally, one of the main bottlenecks to study root adaptation in crops and wild species has been the technical challenge to phenotype roots as a whole system and in their interaction with the soil. The progressive appearance of non-invasive and non-destructive new methods such as shovelomics, X-ray thomography and magnetic resonance imaging (MRI) to visualize the 3D-configuration of roots is allowing to deepen the study of root development during the whole life cycle of plants (Keyes et al., 2013; Walter et al., 2015). As a result, media that allow direct observation of root development, such as hydroponic culture or the use of gelled media, is being widely used to facilitate these studies. Still more problems arise when the goal is to analyze root soil interaction and specially to emulate soil temperature gradient (Füllner et al., 2012). Different sharing platforms and softwares specifically designed to analyze root traits are easing the study of the root system and the associations of different traits to different stages or root responses (Das et al., 2015; Tracy et al., 2020). Although a few challenges still remain to study root adaptation in crops, new methodologies and tools are constantly being developed. Thus, analysis like the transcriptional landscape of different roots types in wheat (Ramírez-González et al., 2018) or the development of expression tissue profiling similar to eFP browser (Winter et al., 2007) or Tomato Expression Atlas (Fernandez-Pozo et al., 2017) in roots of different crops will be immensely useful.
Once beneficial root traits have been defined and potential gene candidates are identified they must be incorporated into breeding programs. A critical challenge is the time it takes from research finding to implementation in agriculture. Complementary approaches and technologies are needed to accelerate downstream breeding. Between the most promising solutions, crop editing has the greatest potential to improve root performance under various abiotic stresses in relatively short time (Butt et al., 2019). Gene editing driven by tailored strategies focused in specific crop species and stress situation, and a rational design and assembly of appropriated gene combination could result in the generation of new crop varieties able to respond to a particular or a combination of stresses without affecting their yield (Bailey-Serres et al., 2019). This approach, together with powerful genome scale analysis, genome wide association studies and molecular marker assisted breeding are a promiseful alternative to produce new elite varieties adapted to the incoming climatic situation.
MP and JC-C wrote the manuscript and draw the figures. LO-S and MB contributed in drafting and revising the manuscript.
This work was supported with a grant to LO-S by the Spanish Ministry of Science and Universities (BIO2016-77840-R) and to MP by FP7. FACCE-JPI-ERA-NET+ CLIMATE SMART AGRICULTURE (ERA46-SYBRACLYM). MB was supported by a postdoctoral research fellowship and JC-C by a Ph.D. contract (FPI), both funded by grant SEV-2016-0672 to the CBGP (Centre of Excellence Severo Ochoa Program of the Agencia Estatal de Investigación, Spain).
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
We apologize to those authors whose research could not be cited owing to space limits.
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Keywords: climate change, root traits, crop yield, adaptation, increased temperature
Citation: Calleja-Cabrera J, Boter M, Oñate-Sánchez L and Pernas M (2020) Root Growth Adaptation to Climate Change in Crops. Front. Plant Sci. 11:544. doi: 10.3389/fpls.2020.00544
Received: 30 December 2019; Accepted: 09 April 2020;
Published: 08 May 2020.
Edited by:Javier Brumos, North Carolina State University, United States
Reviewed by:Mirza Hasanuzzaman, Sher-e-Bangla Agricultural University, Bangladesh
Naser A. Anjum, Aligarh Muslim University, India
Copyright © 2020 Calleja-Cabrera, Boter, Oñate-Sánchez and Pernas. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: M. Pernas, firstname.lastname@example.org