Your new experience awaits. Try the new design now and help us make it even better

ORIGINAL RESEARCH article

Front. Plant Sci.

Sec. Plant Symbiotic Interactions

Volume 16 - 2025 | doi: 10.3389/fpls.2025.1642078

This article is part of the Research TopicSymbiotic Interactions in Microbial-facilitated Vegetation Restoration and Agricultural ManagementView all 16 articles

Mechanisms of root exudates and soil microbial responses to nitrogen reduction and companion cropping for tomato yield increase and quality improvement

Provisionally accepted
De Yang  LiuDe Yang Liu1Xingjia  HeXingjia He2Yingxue  LiuYingxue Liu2Chaofan  SunChaofan Sun2Chunjie  SuChunjie Su2Yishan  LangYishan Lang2Xia  WuXia Wu2*
  • 1Department of horticulture, Heilongjiang Bayi Agricultural University, Daqing, China
  • 2Heilongjiang Bayi Agricultural University, Daqing, China

The final, formatted version of the article will be published soon.

The utilisation of nitrogen fertiliser in excess over an extended period in facility cultivation has been demonstrated to engender a decline in tomato yield and quality, thus becoming a bottleneck issue that restricts production. In order to explore the biological mechanisms of nitrogen reduction and companion planting patterns on tomato yield and quality, this study conducted a two-year pot experiment under different nitrogen application levels and planting patterns, multisystem analysis of tomato rhizosphere soil microbial communities and root secretions was performed using 16S Illumina MiSeq sequencing and LC-MS/MS mass spectrometry. Over two years, the yield of tomatoes grown using reduced nitrogen and companion planting increased by 34.26% and 35.54% compared to monoculture, and by 1.23% and 3.57% compared to the application of conventional nitrogen and companion planting. Nitrogen use efficiency increased by 9.81% and 11.36%, respectively. The nitrogen reduction and companion planting model increased the content of soluble sugars and lycopene, improved soil dehydrogenase and protease activity, and changed the composition of rhizosphere bacterial communities and root exudates. At all nitrogen application rates, companion planting increased the abundance of Pseudomonas. In the 30% nitrogen reduction and conventional nitrogen application systems, the abundance of differential metabolites such as methionine and pipecolic acid was significantly higher in companion crops than in tomato monoculture. On the other side, soil bacteria and root exudates form a complex network of interactions, in which rhizosphere bacteria such as MND1 are positively correlated with Sphingomonas. In summary, the cultivation model of nitrogen reduction and companion planting of potato onions changed the composition of the tomato soil bacterial community and the metabolic pathways of root exudates, enhanced the activity of nitrogen conversion-related enzymes, and promoted the absorption and utilisation of nitrogen nutrients by tomatoes, which provides a theoretical basis for increasing the yield and quality of tomatoes cultivated with 30% nitrogen reduction and companion planting of onions.

Keywords: Nitrogen reduction, Tomato quality, Companion cropping, bacterial diversity, rootexudates

Received: 06 Jun 2025; Accepted: 20 Oct 2025.

Copyright: © 2025 Liu, He, Liu, Sun, Su, Lang and Wu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence: Xia Wu, wuxiaxia_2005@163.com

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.