Genome-wide Characterization of WRKY Family Genes in Four Araceae Species and Their Expression Analysis in Amorphophallus konjac

liang Hao ShiYing ZouMin YangYing QiPenghua GaoYongteng Zhaoyan Fei Huangni Jia Liurong Jian ZhaoLei Yu^*fang Li Li^*

• Kunming University, Kunming, China

Introduction: The Araceae family is a large family of angiosperms containing many economically valuable and ecologically important species, such as Amorphophallus, Zantedeschia elliottiana, and Spirodela intermedia. The WRKY family is one of the largest plant-specific transcription factor families and plays a crucial role in plant responses to biotic and abiotic stresses. Methods: In this study, WRKY family members were identified and characterized in four species—Amorphophallus konjac (A. konjac), Amorphophallus albus (A. albus), Zantedeschia elliottiana (Z. elliottiana), and Spirodela intermedia (S. intermedia)—using bioinformatics approaches. Characterization included analyses of physicochemical properties, gene structure, phylogenetic relationships, chromosomal distribution, collinearity, and cis-regulatory elements. Expressions were specifically performed in A. konjac using transcriptomics data to examine AkWRKY expression across various tissues and stages of corm development. These expression profiles were further validated by quantitative real-time PCR (qRT-PCR), including tissue types (leaf, petiole, corm, and root); hormone treatments (abscisic acid [ABA]); jasmonic acid (JA); salicylic acid (SA); biotic stress (infection by Pectobacterium carotovorum subsp. carotovorum [Pcc]), and abiotic stresses (low temperature, drought, and salt). Results: A total of 79, 57, 59, and 36 WRKY members were identified in A. konjac, A. albus, Z. elliottiana, and S. intermedia, respectively, with the majority predicted to be localized in the nucleus. Most WRKY members contained the conserved heptapeptide WRKYGQK domain within their motifs, and genes within the same subgroup shared similar gene structures and motif distributions. Phylogenetic analysis revealed that most Araceae WRKY members belong to Group II. Collinearity analysis indicated that segmental duplication was the primary driving force for the expansion of the WRKY gene family in these Araceae species (Ka/Ks < 1), suggesting the action of purifying selection. Cis-element analysis revealed that the promoter regions of WRKY genes contain numerous regulatory elements associated with plant growth and development, hormone regulation, stress responses, and light responses.