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ORIGINAL RESEARCH article

Front. Plant Sci., 21 November 2025

Sec. Functional Plant Ecology

Volume 16 - 2025 | https://doi.org/10.3389/fpls.2025.1717501

This article is part of the Research TopicBalancing the Carbon Cycle: the Role of Plants in Natural, Urban, and Agroecosystems in Supporting Climate Change MitigationView all 3 articles

Effects of stand age on community composition and diversity of soil bacteria and fungi in poplar plantations in Northeast China

Lei ZhaoLei Zhao1Bing MaoBing Mao2Hongxing WangHongxing Wang1Luping JiangLuping Jiang1Jin HuangJin Huang3Zhongyi PangZhongyi Pang3Yanhui PengYanhui Peng3Tongbao QuTongbao Qu1Xiyang Zhao*Xiyang Zhao1*
  • 1College of Forestry and Grassland, Jilin Agricultural University, Changchun, China
  • 2Key Laboratory of Beibu Gulf Environment Change and Resources Use, Nanning Normal University, Nanning, China
  • 3Xinmin City Machinery Forest Farm, Shenyang, China

Stand age is one of the most important indicators of plantation development status after afforestation. Soil microbial community plays an essential role in ecosystem functioning. Yet, the responses of soil microbial community composition and diversity to stand development are inadequately understood. Here, we examined changes in community composition and diversity of soil bacteria and fungi in poplar plantations across stand ages and their relationships with soil chemical and biochemical properties in Northeast China. We measured soil chemical properties (organic carbon, total nitrogen, total phosphorus and their stoichiometries), soil biochemical properties (microbial biomass, soil enzyme activity and their stoichiometries), and composition and diversity of soil bacterial and fungal communities in a chronosequence (1, 4, 7 and 9 years) of poplar plantations. Furthermore, we analyzed microbial co-occurrence network and the relationships of soil bacterial and fungal community diversity and composition with soil chemical and biochemical properties. The Chao1 index of soil bacteria was lowest in the 9-year-old plantation, and Chao1 index of soil fungi was lowest in the 7-year-old plantation. Soil bacterial and fungal diversity showed a significant relationship with soil microbial biomass. The most dominant bacterial species were from Proteobacteria, Acidobacteriota, Actinobacteriota, Firmicutes and Chloroflexi, and fungal species were from Ascomycota, Basidiomycota and Mortierellomycota. The number of links and average degree of bacterial communities decreased as stand age of poplar plantations increased, while those of fungal communities increased. Soil bacterial and fungal network parameters showed significant relationship with soil microbial biomass ang microbial stoichiometry. Our results showed that the impact of stand age on soil microbial community diversity and composition is specific and stage-dependent, rather than following a simple linear trend with increasing age, and this may be due to the influence of stand age on stoichiometry of soil microbial biomass.

1 Introduction

Afforestation is one of the most effective means to deal with climate change. Several ecological restoration projects have been initiated by the Chinese government since the 1980s, such as converting croplands and marginal lands into forests, and Three-north Shelterbelt Project, to prevent soil and water quality degradation. Therefore, China has the largest afforested area in the world with an estimated area of 80.03 × 106 ha, or 26.2% of global forest plantation area (265 × 106 ha) (National Forestry and Grassland Administration, 2020). Previous studies showed that soil microbial processes are essential to the functioning of forest ecosystems, such as nutrient cycling and soil C sequestration (Tisdall, 1994; Pajares and Bohannan, 2016; Chen et al., 2013; Ni et al., 2021). During plantation management, afforestation might significantly affect the vegetation structure and soil nutrient availability by affecting soil microbial processes (Li et al., 2023; Shi et al., 2024). Consequently, understanding changes in soil microbial community and function is essential for developing management strategies designed to enhance the stability of plantation forest ecosystems.

Stand age is one of the most important indicators of plantation development status after afforestation, substantially affecting the dynamics of soil chemical and biochemical properties, enzyme activities, and microbial communities (Inagaki et al., 2004; Trogisch et al., 2016; Wang et al., 2021a; Guo and Ren, 2014). For instance, soil nutrient availability increased with increasing stand age in Chinese fir plantations (Wu et al., 2020; Xia et al., 2021). In Pinus radiata plantations with stand ages ranging from 1 to 33 years, soil microbial biomass N in 5-year-old was the lowest (Ross et al., 1995). Compared with 3-, 7- and 10-year-old Eucalyptus plantations, the 13-year-old plantation was found to have greater microbial biomass (Cao et al., 2010). During the development of plantations, the diversity and composition of soil microbial communities regulate most biogeochemical processes by secreting extracellular enzymes (Li et al., 2015; Qiang et al., 2020), thereby playing an essential role in influencing plant growth. Therefore, it is necessary to investigate the changes in diversity and composition of soil microbial communities during plantation development (Morriën et al., 2017).

In northern China, large-area poplar plantations have been established for wood production, urban greening, desertification control and carbon sequestration, due to their fast growth (Zhou et al., 2013). Ecologically, poplar plantations may have the potential to change the ecological environment because of their fast growth and high biomass productivity (Han et al., 2022; Song et al., 2021). However, the effects of stand ages of poplar plantations on the soil quality in the northern China and specifically on soil microbial community structure and function are poorly understood. According to previous studies, soil microbial enzymes participate in almost all soil biochemical processes and play an essential role in nutrient cycling within ecosystems (Hill et al., 2012; Song et al., 2012). Additionally, soil microbial biomass serves as a key indicator of nutrient cycling and can sensitively reflect changes in soil quality (Nannipieri et al., 1979; Moreira et al., 2011; Polyanskaya et al., 2017). Soil microbial diversity is one of the main driving factors of the soil biochemical cycle. Several studies found that afforestation greatly affects the biological and biochemical properties of soil, including soil microbial enzyme activities, microbial biomass and microbial diversity (Li et al., 2023; Shi et al., 2024). Furthermore, Co-occurrence network analyses, which reflect network complexity and interactions among bacterial and fungal species in soil microbial communities, have recently been applied in soil microbial community studies (Chen et al., 2022; Wu et al., 2023). Soil microbial network complexity is often influenced by multiple factors, such as climate change and management strategies (Tu et al., 2020; Gong et al., 2024). Several studies have confirmed that the soil physicochemical properties and disturbance levels are key factors changing structure and network topology of microbial communities (Nakayama et al., 2019; Zhu et al., 2021; Xu et al., 2022). Although microbial network analysis has been widely applied in multiple ecosystems, the understanding of how complex microbial communities respond to stand age of plantations is still inadequate.

Therefore, this study aims to investigate the responses of the soil biological properties and specifically soil microbial community structure and function to stand development (1, 4, 7 and 9 years) of poplar (Populus cathayana × canadensis ‘Xinlin 1’) plantations in northern China. Soil microbial diversity and community composition were determined by using amplicon high-throughput sequencing. Alpha diversity indices, including Chao1 richness, Shannon diversity, and Observed species, were calculated to assess microbial diversity within samples. Additionally, soil physicochemical properties were determined, and their relationships with soil microbial diversity, community composition, co-occurrence network pattern, and potential function were also examined. Based on the aforementioned findings, we hypothesize that: (1) soil chemical and biochemical properties and their stoichiometry were lower in the older poplar plantation (9-year-old plantation) compared with that in younger plantation (4-year-plantation or 1-year-old plantation); (2) the diversity of soil bacteria and fungi will decrease with the increase in stand ages of poplar plantation, and the complexity of the co-occurrence network of bacterial and fungal communities gradually increased with stand age; (3) the changes of soil bacterial and fungal community diversity and composition mainly related to changes in soil microbial biomass, enzyme activity and their stoichiometry rather than soil chemical properties and chemical stoichiometry.

2 Materials and methods

2.1 Experiment design

The study site was located in Xinmin State Mechanical Forest Farm (41°42′–42°17′N, 122°27′–123°20′E), Liaoning Province, China. The study site has a temperate continental monsoon climate with a mean annual temperature of 7.6 °C and precipitation of 656.5 mm. The soils are sandy loam. A chronosequence (1, 4, 7 and 9 years) of poplar (Populus cathayana × canadansis ‘Xinlin 1’) plantations were used in the present study.

In August 2022, five plots of 15 m × 15 m were randomly established in each stand age plantation, and the distance between adjacent plots was larger than 15 m. Four soil samples from each plot were randomly collected at 0–10 cm depth by using soil-corer with an inner diameter of 4.5 cm according to the S-shape, and then they were pooled together to give one composite sample. After stones and coarse roots were removed, soil samples were sieved (2 mm), and then divided into three sub-samples. One subsample was used to measure soil organic carbon (SOC), total nitrogen (TN), total phosphorus (TP) and pH after air dried. One subsample was stored at liquid nitrogen for later measurements of microbial community composition and diversity. Another subsample was refrigerated at 4°C and used to analyze microbial biomass, enzyme activity, NH4+ and NO3- within two weeks.

2.2 Analysis of chemical and soil enzyme activity

Soil pH was measured in water extracts of 1:2.5 (w/v) of air-dried soil and deionized water. Soil NH4+-N and NO3N were determined by the indophenol blue colorimetric method and ultraviolet spectrophotometry, respectively (Kempers and Zweers, 1986). After sieved, the SOC and N concentrations of soil were measured using the K2Cr2O7–H2SO4 wet oxidation method (Nelson and Sommers, 1996). Total N concentration was determined with a continuous-flow autoanalyzer (AutoAnalyzer III, Bran+Luebbe GmbH, Germany) after soil samples were digested with H2SO4. Total P concentration was measured with the sodium hydroxide melting-molybdenum antimony colorimetric method. The C/N, C/P and N/P ratios of soil were calculated from the values of SOC concentration and total N and P concentrations. The MBC, MBN and MBP were determined using a chloroform (CHCl3) based fumigation-0.5 M K2SO4 extraction method (Frey et al., 2004). The activities of four extracellular enzymes participating in the cycling of C (β-glucosidase, BG), N (N-acetyl-β-D-glucosaminidase, NAG) and P (acid phosphomonoesterase, AP) were measured following the microporous plate method (Bach et al., 2013; German et al., 2012).

2.3 Microbial community analysis

The total DNA of the microbial communities in the soil samples was extracted using a DNA extraction kit (E.Z.N.A ® Soil DNA Kit). Three replicate PCR reactions were pooled in equal concentrations based on the PCR product yields. The PCR products were verified on a 2% agarose gel and subsequently purified using the extraction kit (E.Z.N.A ® Soil DNA Kit). The purified DNA was generated from a sequencing library on the Illumina HiSeq 2500 platform (Illumina, San Diego, CA, USA). Amplification and barcoded pyrosequencing of the 16S rRNA gene were conducted according to a previously described instruction (Sengupta and Dick, 2017). The V3-V4 region of the 16S rRNA genes was amplified using the primers 515 F: GTGCCAGCMGCCGCGGTAA and 907(806)R: CCGTCAATTCCTTTGAGTT. The fungal rDNA ITS1 region was amplified using PCR with the primers ITS1F (5′-CTTGGTCATTTAGAGGAAGTAA-3′). The PCR products were sequenced using an Illumina HiSeq platform following the standard protocols. The library was constructed and sequenced on an Illumina HiSeq platform as per the standard protocols. Sequencing techniques and data analyses were also performed by Guangdong Novogene Bioinformatics Technology Co., Ltd. (Tianjin, China).

Data obtained from Illumina sequencing were handled by separating primers and adapters from the reads, and a reading of approximately 250 bp was obtained. Sequences with >97% similarity were clustered into one operational taxonomic unit (OTU) using the UPARSE algorithm (v. 7.0.1001 http://drive5.com/usearch/manual/singletons.html). The α-diversity of the bacterial community, including Shannon index and Chao1 index, was determined by OTUs using Quantitative Insights Into Bacterial Ecology (QIIME, v. 1.7.0).

2.4 Data analysis

Differences in chemical and biochemical properties of soil among stand ages were analyzed by one-way analysis of variance (ANOVA) according to Duncan’s test (P < 0.05) using the SPSS 22.0 software. For microbial diversity analysis, Shannon and Chao1 indices were used. Correlation heatmaps describing the correlations between chemical and biochemical properties of soil, soil microbial diversity and the dominant phyla, classes and genera of soil bacteria and fungi (Origin 2023). Correlation coefficients were calculated based on Pearson’s correlation coefficient method. Non-metric multidimensional scaling (NMDS) was conducted and visualized using the vegan package in R (version 4.5.1).

Response ratio (RR) was defined as the response of the soil microbial community diversity and composition to control plantation (1-year-old), and was calculated as follows (Sheng et al., 2015):

RR=Microbial index in treatment (Microbial index in control)Microbial index in control×100%

Network was used to explore co-occurrence patterns of abundant and rare microbial taxa at the four stand ages using the Molecular Ecological Network Analyses Pipeline (MENA, http://ieg4.rccc.ou.edu/mena) (Zhou et al., 2010; Deng et al., 2012). The similarity thresholds between 0.70 and 0.99 with 0.01 intervals were obtained and applied to the Spearman rank correlation matrix, and correlations above the specific threshold were used to compute the microbial network eigenvalues. We calculated the network topological characteristics, including average path length, nodes, edges, positive links and negative links, which were then used to describe the properties of individual nodes in the network and the overall topology of different networks. Visualization of the co-occurrence network was performed with the Gephi platform (http://gephi.github.io). Redundancy analysis (RDA) was used to determine the relative contributions of soil chemical and biochemical properties in explaining the variance of soil microbial community diversity and composition. The explanatory magnitude and significance of each explanatory variable were analyzed by hierarchical segmentation. The “Vegan” (Dixon, 2003) package in R was used for RDA.

3 Results

The changes in soil microbial community and function are essential for developing management strategies designed to enhance the stability of plantation forest ecosystems. Yet, the responses of soil microbial community composition and diversity to stand development of poplar plantation in northern China are inadequately understood. Therefore, the present study investigated the responses of the soil microbial diversity, community composition, co-occurrence network pattern, and potential function to stand development (1, 4, 7 and 9 years) of poplar plantations.

3.1 Soil chemical and biochemical properties

Soil pH in the 9-year-old plantation was lower than those in the 1-, 4- and 7-year-old plantations (Figure 1A). There were no significant differences in soil pH among 1-, 4- and 7-year-old plantations. The SOC, N concentration and P concentration in the 1-year-old plantation were higher than those in the 9-year-old plantation (Figures 1B–D). There were no significant differences in soil C/N ratio between 4- and 9-year-old plantations, and soil C/N ratio was lower in the 7-year-old plantation than those in the other stand ages (Figure 1E). Soil C/P and N/P ratios in the 4-year-old plantation were higher than those in the other stand ages (Figures 1E, G). Soil NO3N concentration in the 7-year-old plantation was higher than those in the other stand ages (Figure 1H). In the 1-year-old plantation, soil NO3N concentration was lower than those in the other stand age plantations. There were no significant differences in MBC, MBP, mC/P ratio and mN/P ratio among 1-, 4- and 7-year-old plantations (Figures 1I, K, M, N). In the 1-year-old plantation, MBN was lower and mC/N ratio was highest than those in the other stand age plantations (Figures 1J, L). Soil NH4+-N concentration in the 4-year-old plantation was higher, and soil NH4+-N concentration in the 9-year-old plantation was lower than those in the other stand age plantations (Figure 1O). There were no significant differences in BG and NAG activities among 4-, 7- and 9-year-old plantations (Figures 1P, Q). Soil AP activity was higher, and eC/P and eN/P ratios were lower in the 1-year-old plantation than those in the other stand age plantations (Figures 1E, F, R).

Figure 1
Multiple bar charts comparing different soil parameters across four treatments labeled 1a, 4a, 7a, and 9a. Parameters include pH, SOC, N, and P concentrations, MBC, MBN, NO3-N, NH4-N levels, various ratios like C/N, C/P, and enzyme activities such as BG, NAG, and AP. Each chart uses a letter label from A to U, with significant differences marked by letters above bars. Blue bars represent early treatments, while red bars represent later ones.

Figure 1. The chemical and biochemical properties of soil in different aged poplar plantations. NO3-N, Nitrate nitrogen; NH4+-N, Ammonium nitrogen; SOC, soil organic carbon; TN, Total nitrogen; TP, Total phosphorus; C/N ratio, ratio of SOC and TN; C/P ratio, ratio of SOC and TP; N/P ratio, ratio of TN and TP; MBC, Microbial biomass carbon; MBN, Microbial biomass nitrogen; MBP, Microbial biomass phosphorus; mC/N ratio, ratio of MBC and MBN; mC/P ratio, ratio of MBC and MBP; mN/P ratio, ratio of MBN and MBP; BG, β-glucosidase; NAG, N-acetyl-β-D-glucosaminidase; AP, acid phosphomonoesterase; eC/N ratio, ratio of BG and NAG; eC/P ratio, ratio of BG and AP; eN/P ratio, ratio of NAG and AP. Different lowercase letters represent significant differences among different stand ages at P < 0.05, respectively.

3.2 Soil bacterial and fungal diversity and community composition

The one-way ANOVA test indicated that there were no significant differences in Shannon index of soil bacteria and fungi among four different aged poplar plantations (Table 1). The Chao1 index of soil bacteria in the 1-year-old plantation was higher than those in the 9-year-old plantation. There were no significant differences in Chao1 index of soil bacteria among 1-, 4- and 7-year-old plantations. The Chao1 index of soil fungi in the 1-year-old plantation was higher than those in the other three stand ages. There were no significant differences in Chao1 index of soil fungi between 4-and 7-year-old plantations.

Table 1
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Table 1. Soil microbial diversity in different aged poplar plantations.

All of the 16S reads obtained from soils of 1-, 4-, 7-year-old plantations were classified into 47 bacterial phyla, 124 classes and 726 genera (Figures 2A, 3A). Overall, the phylum Proteobacteria dominated the bacterial communities, representing 27.02%, 25.01%, 23.82% and 30.13% in the 1-, 4-, 7- and 9-year-old plantations, respectively. All of the ITS reads obtained from soils of 1-, 4-, 7-year-old plantations were classified into 10 fungal phyla, 29 classes and 244 genera (Figures 2B, 3B).

Figure 2
Bar and heat map charts display microbial community compositions. Panels A and B show relative abundances of different phyla, classes, and genera. Panels C and D are heat maps indicating the dominance of specific phyla, classes, and genera in various environmental samples, with color gradients from red to blue denoting high to low abundances.

Figure 2. Relative abundance of the dominant phyla, classes and genera of bacteria (A) and fungi (B) in soil in different aged poplar plantations. Correlations between soil chemical and biochemical properties and dominant and keystone associations of bacteria (C) and fungi (D) at levels of phyla, classes and genera. *P < 0.05; **P < 0.01; ***P < 0.001.

Figure 3
Two NMDS scatter plots labeled A and B compare four groups identified by different colored and shaped markers: gray squares, red circles, blue triangles, and green inverted triangles. Axes are labeled NMDS 1 and NMDS 2 for plot A, and NMDS 1 only for plot B. Each plot shows varying distributions of points, demonstrating differences in data dimensions.

Figure 3. Nonmetric multidimensional scaling (NMDS) representation of soil bacterial community (A) and fungal community (B) in different aged poplar plantations.

3.3 Soil bacterial and fungal network complexity

Distinct co-occurrence patterns were demonstrated for both bacterial and fungal soil communities in different stand ages of plantation (Figure 4). There were no significant differences in the node number of the bacterial and fungal communities between different stand ages of poplar plantation. In general, the link numbers and average degree of the bacterial communities decreased with the increase of stand age of poplar plantation, and the link numbers and average degree of the fungal communities increased with the increase of stand age of poplar plantation.

Figure 4
Diagram visualizing bacterial and fungal networks. Panel A displays a complex network of bacterial nodes categorized by phylum, with 229 nodes and 4,053 links. Panel B illustrates a fungal network with 33 nodes and 45 links. Panels C to F present bar graphs comparing total links, node degree, node betweenness, and clustering coefficient for different time points in bacterial and fungal networks. Panel G shows a heatmap depicting correlations of network parameters with environmental factors.

Figure 4. The co-occurrence networks of soil bacterial (A) and fungal (B) communities; parameters characterizing the complexity of networks (C–E); correlations between soil chemical and biochemical properties and network complexity of soil bacteria and fungi (F). NO3-N, Nitrate nitrogen; NH4+-N, Ammonium nitrogen; SOC, soil organic carbon; TN, Total nitrogen; TP, Total phosphorus; C/N ratio, ratio of SOC and TN; C/P ratio, ratio of SOC and TP; N/P ratio, ratio of TN and TP; MBC, Microbial biomass carbon; MBN, Microbial biomass nitrogen; MBP, Microbial biomass phosphorus; mC/N ratio, ratio of MBC and MBN; mC/P ratio, ratio of MBC and MBP; mN/P ratio, ratio of MBN and MBP; BG, β-glucosidase; NAG, N-acetyl-β-D-glucosaminidase; AP, acid phosphomonoesterase; eC/N ratio, ratio of BG and NAG; eC/P ratio, ratio of BG and AP; eN/P ratio, ratioof NAG and AP. Different lowercase letters above the bar plots indicate significant differences at P < 0.05. Significant levels in correlation analyses: *P < 0.05; **P < 0.01; ***P < 0.001.

The node and link numbers were respectively greater in the bacterial communities (229 and 4053) than those in the fungal communities (33 and 45) (Figures 4A, B). The node degree and clustering coefficient of the bacterial communities did not show significant differences among 4 stand ages of poplar plantation (Figures 4D, F). The node betweenness of the bacterial communities in the 1-year-old plantation was higher than those in the other stand ages of poplar plantation (Figure 4E). No significant differences in the node betweenness of the bacterial communities were found between 4- and 7-year-old plantations. The node betweenness of the bacterial communities showed significant positive correlation with soil NO3N concentration, MBN and mN/P ratio (Figure 4G). The node degree and clustering coefficient of the fungal communities in the 9-year-old plantation were higher than those in the other stand age of plantation (Figures 4D, F). There were no significant differences in the node degree, clustering coefficient and node betweenness of the fungal communities between 4- and 7-year-old plantations. The node degree, clustering coefficient and node betweenness of the fungal communities had significant relationship with soil N and P concentrations, MBC, MBP, mC/N ratio and mC/P ratio (Figure 4G).

3.4 Effects of soil chemical and biochemical properties on soil microbial diversity and community

The Shannon and Chao1 indexes of soil bacteria showed significant positive correlations with soil pH, total N concentration, MBC, mC/N ratio, mC/P ratio and eC/N ratio (Table 2). The Shannon and Chao1 indexes of soil bacteria showed significant negative correlations with soil MBP. The Chao1 index of soil fungi showed significant negative correlations with soil NO3N concentration, MBN, mC/N ratio and BG. Furthermore, according to the RDA results, soil bacterial diversity showed significant relationship with soil microbial biomass, microbial stoichiometry, enzyme activity and enzyme stoichiometry (P ≤ 0.001; Table 3). These four variables explained 1.49%, 10.28%, 5.73% and 7.08% of variance of bacterial diversity, respectively. Therefore, the influence of microbial stoichiometry on soil bacterial diversity was more important than soil microbial biomass, enzyme activity and enzyme stoichiometry. Meanwhile, soil fungal diversity showed significant relationship with soil microbial biomass and enzyme activity (P < 0.05; Table 3). These two variables explained 6.62% and 9.81% of variance of fungal diversity, respectively.

Table 2
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Table 2. Correlations between soil microbial diversity and soil chemical and biochemical properties in the poplar plantations.

Table 3
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Table 3. RDA results of effects of soil chemical and biochemical properties on soil microbial diversity and community. .

Proteobacteria, Acidobacteriota, Firmicutes and Chloroflexi showed significant correlations with eC/P and eN/P ratios (Figure 2C). Actinobacteriota had positive correlations with soil pH, soil NH4+-N concentration and N/P ratio. Gammaproteobacteria and Alphaproteobacteria negatively related to soil pH and N/P ratio. RB41 positively related to soil NO3N concentration, P concentration and AP activity, and negatively related to soil NH4+-N concentration and C/N ratio. Lactobacillus showed positive relationship with soil pH, N concentration, eC/P ratio and eN/P ratio. Ascomycota showed a significant positive correlation with soil BG activity (Figure 2D). Basidiomycota negatively related to soil NO3N concentration and MBN, and positively related to C/N ratio. Mortierellomycota, Mortierellomycetes and Mortierella negatively related to soil NH4+-N concentration and SOC. Besides, according to the RDA results, soil bacterial community composition showed significant relationship with soil chemical properties, chemical stoichiometry, microbial biomass and microbial stoichiometry (P ≤ 0.001; Table 3). These four variables explained 52.8%, 27.75%, 5.89% and 6.96% of variance of bacterial community composition, respectively. Thus, the influence of soil chemical properties and chemical stoichiometry on soil bacterial community composition were more important than microbial biomass and microbial stoichiometry. Meanwhile, soil fungal community composition showed significant relationship with soil chemical stoichiometry and microbial stoichiometry. These two variables explained 29.01% and 7.9% of variance of fungal community composition, respectively.

Soil bacterial network parameters showed significant relationship with soil microbial biomass, microbial stoichiometry, enzyme activity and enzyme stoichiometry (P ≤ 0.001; Table 3). These four variables explained 21.05%, 25.16%, 10.75% and 6.06% of variance of bacterial network parameters, respectively. Meanwhile, soil fungal network parameters showed significant relationship with soil microbial biomass, microbial stoichiometry, enzyme activity and enzyme stoichiometry. These four variables explained 21.05%, 25.16%, 10.75% and 6.07% of variance of fungal network parameters, respectively. Therefore, the influence of soil microbial biomass and microbial stoichiometry on soil bacterial and fungal network parameters were more important than enzyme activity and enzyme stoichiometry.

3.5 Response ratio of soil microbial community diversity and composition to stand age

The mean soil microbial RR varied markedly, ranging from -15.69% to -1.49% for soil bacterial diversity indexes, from -35.51% to -7.32% for soil fungal diversity indexes (Figure 5). The response ratio of node degree and node betweenness ranged from -1.35% to 9.23% for soil bacterial communities, and from -27.39% to 68.41% for soil fungal communities. Generally, the mean RR values of diversity indexes of bacterial and fungal communities were negative following primary stand age to the other three stand ages of poplar plantation. Additionally, compared to 1-year-old plantation, there was more prevalence of negative effects of 7-year-old plantation, and there was more prevalence of positive effects of 4- and 9-year-old plantations on soil fungal community.

Figure 5
Chart showing various ecological metrics for fungi and bacteria. The x-axis represents different values while the y-axis lists categories like clustering coefficient, node betweenness, node degree, observed species, and indexes for fungus and bacteria. Each panel (4a, 7a, 9a) contains data points for distinct fungal and bacterial groups, such as Botryotrichum, Mortierella, and Pseudomonas. Squares represent data points, with some including error bars.

Figure 5. Response ratio (RR) of soil microbial diversity, network parameters and dominant phyla, classes and genera of bacteria and fungi at different stand ages.

4 Discussion

Globally, a few studies have highlighted the effects of stand age on soil chemical and biochemical properties and their stoichiometries. Previous studies found that SOC and MBC increased successively from young to mature stands and then declined for old stands (Wen et al., 2014; Xu et al., 2021). In a study of Chinese cypress forest stands, Gong et al. (2022) found lower active carbon and total nitrogen contents in overmature stands because of the lower amount of litter fall and poor litter quality. Similarly, the present study found that SOC, MBC and N concentration in the 9-year-old plantation were significantly lower than those in 1- and 4-year-old plantations. With stand development, canopy expansion reached maximum, the litterfall, and fine root production increase, resulting in more accumulation of organic matter (Sharma et al., 2009; Luan et al., 2010; He et al., 2021; Liu et al., 2022). However, in old stand age, fine root biomass and litterfall decreased because of less requirement of nutrients (He et al., 2021), which may result in lower SOC and MBC. Furthermore, the present findings confirmed that the older poplar plantation (9-year-old plantation) exhibited lower stoichiometry of chemical properties, microbial biomass and enzyme activity (i.e., C/P ratio, N/P ratio, mC/P ratio, mN/P ratio, eC/P ratio, eN/P ratio except for C/N ratio and eC/N ratio; Figure 1) compared to the young plantation (4-year-old plantation or 1-year-old plantation), which was consistent with our first hypothesis. It indicated that younger stands make favorable conditions for the growth of soil microbes; however, in old stage, the decrease in litter quantity and quality may reduce the growth of soil microbial community. Differently, Zhao et al. (2024) suggested that the older walnut orchards contained more C resources vs. N and P resources (as indicated by the C/N and C/P values) compared to the younger walnut orchards.

Our findings in the present study indicated that the diversity and composition of both bacteria and fungi did not increase with stand age, which is contrary to our second hypothesis. Compared with other stand ages, the Chao1 index and observed species of bacteria decreased in the 9-year-old plantation, and Chao1 index and observed species of fungi decreased in the 7-year-old plantation. Moreover, compared to 1-year-old plantation, there was more prevalence of negative effects of 4-, 7- and 9-year-old plantations on soil microbial diversity (Figure 4). Thus, soil microbial diversity decreased with increased stand ages of poplar plantation. This is mainly due to factors such as the microbial biomass and enzyme activity and their stoichiometry rather than chemical properties and chemical stoichiometry, which is contrary to the findings of Wang et al. (2021b) and Chen et al. (2016). For instance, the results of present study showed that the soil C/N ratio of microbial biomass and enzyme activity significantly related to soil Chao1 index and observed species of bacteria, and soil MBN and C/N ratio of microbial biomass significantly related to soil Chao1 index and observed species of fungi. Additionally, the stoichiometry of microbial biomass had greater influences on soil bacterial diversity compared to soil microbial biomass, enzyme activity and stoichiometry of enzyme activity according to the RDA results. Differently, soil enzyme activity showed greater effects on fungal diversity than the stoichiometry of microbial biomass.

In the present study, the most important bacterial species were Proteobacteria, Acidobacteriota, Actinobacteriota, Firmicutes and Chloroflexi. Proteobacteria always accounted for a larger proportion in bacterial community, similar to the findings of Bi et al. (2022). Five classes (Gammaproteobacteria, Alphaproteobacteria, Vicinamibacteria, Actinobacteria and Bacilli) of Proteobacteria were observed in the present study. Many important taxa belong to Gammaproteobacteria, such as Pseudomonadaceae, which is widely distributed in soil and plants and have a strong ability to decompose organic matter and can use a variety of organic matter as energy sources. The 9-year-old plantation had the greater relative abundance of Proteobacteria, Gammaproteobacteria and Pseudomonadaceae, which indicated that the soil microbes were more active and had higher substrate decomposition efficiency during this growth period. The fast-growing, copiotrophic members of the phylum Proteobacteria are capable of utilizing various C substrates (Fierer et al., 2007) and positively correlated with the soil organic C, N fractions, and available nutrients (Qiu et al., 2021). Similarly, the relative abundance of Proteobacteria showed significant relationship with C/P ratio of microbial biomass and enzyme activity and N/P ratio of enzyme activity in the present study. Meanwhile, the relative abundance of Gammaproteobacteria showed significant relationship with soil NO3-N concentration, NH4+-N concentration and P concentration. Besides, chemical properties rather than chemical stoichiometry, soil microbial biomass and enzyme activity showed significant effects on soil microbial community composition. Therefore, the markedly increased Proteobacteria abundance in the 9-year-old plantation compared to the other stand ages of plantation may partially be ascribed to the changed soil chemical properties.

The fungal community was mainly composed of Ascomycota, Basidiomycota and Mortierellomycota, which was consistent with the previous studies (Kernaghan and Patriquin, 2011; Toju et al., 2013). Bi et al. (2022) found that the proportion of fungal community structure in the rhizosphere showed strong heterogeneity among plantations with various forest ages, and the reasons for fungal community changes may be caused by the plant growth conditions, root changes, and root exudates. Moreover, compared to 1-year-old plantation, there was more prevalence of negative effects of 7-year-old plantation, and there was more prevalence of positive effects of 4- and 9-year-old plantation on soil fungal community (Figure 4). Thus, the composition of bacteria and fungi varied with the different stand ages in the present study. The impact of stand age on soil microbial community composition is specific and stage-dependent, rather than following a simple linear trend with increasing stand age. Compared with young plantations, mature plantations have obviously different requirements for nutrients which significantly related to the structure of the microbial community (Bi et al., 2022). Thus, changes of microbial community might be partly attributed to the differences in nutrient requirements of different aged forests (Goldfarb et al., 2011).

Co-occurrence network analysis is used to explain the microbial community aggregation, which can clearly show the network features and interrelationships among OTUs (Agler et al., 2016; Ma et al., 2016). The positive and negative correlation coefficients between two OTUs in the co-occurrence network represent co-aggregation and mutual exclusion, respectively (Faust and Raes, 2012). In the present study, there were no significant differences in node degree and clustering coefficient of bacteria among different stand ages of poplar plantation, while the node degree and clustering coefficient of fungal communities in the 9-year-old plantation were higher than those in the other stand ages. Thus, the complexity of the co-occurrence network of bacteria was not significantly changed with stand age, while the complexity of the co-occurrence network of fungi gradually increased with stand age, which is contrary to our second hypothesis. It indicated that the effect of aggregation or repulsion of the fungi taxon increased as the plantation became older, contrary to a previous study of Bi et al. (2022). Additionally, the results of RDA showed that soil microbial biomass and its stoichiometry had significant effects on the co-occurrence network of fungi compared to soil chemical and biochemical properties and enzyme activity, which is contrary to our third hypothesis. The node degree and clustering coefficient were significantly negatively related to soil MBC and C/N and C/P ratios of microbial biomass. Thus, the increasing network complexity of fungal community in the 9-year-old plantation might be attributed to the decreased soil microbial biomass and its stoichiometry compared to that in the other stand ages of plantation. Furthermore, the present results suggested that soil bacterial and fungal networks had diverse characteristics and responses to different stand ages of poplar plantation, with stand age having smaller effects on bacterial networks than on fungal networks, contrary to previous studies (Liu et al., 2024). Therefore, compared with fungal networks, bacterial networks are more stable and less prone to change with stand age of poplar plantation.

5 Conclusions

In general, our results suggest that the 9-year-old plantation exhibited lower chemical properties, microbial biomass and stoichiometry of chemical properties, microbial biomass and enzyme activity compared to the younger plantation (4-year-old plantation or 1-year-old plantation). Changes in the diversity and compositions of both soil bacterial and fungal communities were associated with stand ages of plantation. Compared to 1-year-old plantation, there was more prevalence of negative effects of 4-, 7- and 9-year-old plantations on soil microbial diversity. Thus, soil microbial diversity in 4-, 7- and 9-year-old plantations was lower than those in the 1-year-old plantation. This is mainly due to factors such as the microbial biomass and enzyme activity and their stoichiometry rather than chemical properties and chemical stoichiometry. The most important bacterial species were Proteobacteria, Acidobacteriota, Actinobacteriota, Firmicutes and Chloroflexi, and the fungal community was mainly composed of Ascomycota, Basidiomycota and Mortierellomycota. The changes in bacterial community compositions might be partly attributed to soil chemical properties and chemical stoichiometries rather than to soil microbial biomass, enzyme activity and their stoichiometries, and the changes in fungal community compositions might be partly attributed to soil chemical stoichiometry rather than soil chemical properties, microbial biomass, enzyme activity and their stoichiometry. Moreover, the complexity of the co-occurrence network of bacteria was not significantly changed with stand age, while the complexity of the co-occurrence network of fungi gradually increased with stand age. Thus, compared with fungal networks, bacterial networks are more stable and less prone to change with stand age of poplar plantation. Soil microbial biomass and its stoichiometry showed the greater influences on the co-occurrence network of bacteria and fungi compared to soil chemical properties, enzyme activity and their stoichiometry. Taken together, these results suggest that the results of present study found that the impact of stand age on soil microbial community diversity and composition is specific and stage-dependent, rather than following a simple linear trend with increasing age, and this may be due to the influence of stand age on stoichiometry of soil microbial biomass.

Data availability statement

The data that support the findings of this study are available from the corresponding author upon reasonable request.

Author contributions

LZ: Data curation, Writing – original draft. BM: Data curation, Formal analysis, Writing – review & editing. HW: Data curation, Formal analysis, Writing – review & editing. LJ: Data curation, Methodology, Writing – review & editing. JH: Formal analysis, Writing – review & editing. ZP: Data curation, Writing – review & editing. YP: Data curation, Formal analysis, Writing – review & editing. TQ: Writing – review & editing. XZ: Writing – review & editing.

Funding

The author(s) declare financial support was received for the research and/or publication of this article. This work was supported by the National Key Research and Development Program of China (2021 YFD2201204) and the National Natural Science Foundation of China (32560279).

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Generative AI statement

The author(s) declare that no Generative AI was used in the creation of this manuscript.

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Keywords: microbial biomass stoichiometry, enzyme stoichiometry, bacterial community, fungal community, microbial network analysis

Citation: Zhao L, Mao B, Wang H, Jiang L, Huang J, Pang Z, Peng Y, Qu T and Zhao X (2025) Effects of stand age on community composition and diversity of soil bacteria and fungi in poplar plantations in Northeast China. Front. Plant Sci. 16:1717501. doi: 10.3389/fpls.2025.1717501

Received: 02 October 2025; Accepted: 31 October 2025;
Published: 21 November 2025.

Edited by:

Barbara Vento, CONICET Mendoza, Argentina

Reviewed by:

Junhong Zhang, Zhejiang Agriculture and Forestry University, China
Mingmin Zhao, Inner Mongolia Agricultural University, China

Copyright © 2025 Zhao, Mao, Wang, Jiang, Huang, Pang, Peng, Qu and Zhao. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Xiyang Zhao, emhhb3h5cGhkQDE2My5jb20=

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.