Original Research ARTICLE
Hundred Fifty Years of Herbarium Collections Provide a Reliable Resource of Volatile Terpenoid Profiles Showing Strong Species Effect in Four Medicinal Species of Salvia Across the Mediterranean
- 1Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
- 2Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
- 3Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
Herbarium samples are increasingly being recognized for their potential in answering a wide range of research questions. However, the suitability of herbarium samples for chemical analysis is largely unexplored as they are thought to be too degraded. The aim of this study was to explore terpenoid profiles across time and geographic space for four medicinal species of Salvia across the Mediterranean to assess the suitability of using herbarium specimens in chemical analyses. Herbarium samples of Salvia aethiopis, S. multicaulis, S. officinalis, and S. sclarea collected over 150 years across the Mediterranean were compared to modern samples using both targeted and untargeted gas chromatography-mass spectrometry analysis of terpene profiles. There was no effect of collection year on chemical composition, although the total concentration of the 20 assessed standards and two individual standards significantly decreased over time. Instead, chemical profiles were defined by species, with strong species effects identified on both the targeted and untargeted chemical composition. Geographic variation was a factor in regulating the untargeted chemical compositions, suggesting some underlying environmental effects. However, there was no effect of sample altitude on either the targeted or untargeted chemical compositions. Chemical composition of four Salvia species are predominantly defined by species, and there was a substantially smaller effect of year of sampling. Given these results herbarium collections may well represent a considerably underused resource for chemical analyses that can benefit biodiversity and other studies.
Herbarium collections are increasingly being recognized as a unique, verifiable, and underused resource of big data across time and space for a variety of research questions (Lavoie, 2012; Funk, 2014; Rønsted et al., 2017; Cardoso et al., 2018; James et al., 2018). Herbarium collections offer an easily accessible source of specimens for a plethora of research questions compared to field expeditions (Bebber et al., 2010; Hardion et al., 2014; Xu et al., 2015). Additionally, herbarium specimens are records in time and space and represent several 100 years of collection history across the globe, including species rare and extinct or from now gone habitats (Silva et al., 2017) that provide possibilities simply not available using only modern samples.
Collections provide a time window into the past allowing exploration of changes in composition of floras (Calinger, 2015), distribution of invasive weeds or threatened species (Rivers et al., 2011; Martin et al., 2016), changes in flowering times (Davis et al., 2015) or leaf-out times (Everill et al., 2014) in response to climate change as well as to model predictions of future trends (James et al., 2018).
As the technical difficulties of extracting high quality DNA from historical materials are being overcome (Bieker and Martin, 2018), herbarium materials are also increasingly being used in genomic studies at all scales, from populations to phylogenies (Kuzmina et al., 2017; Bieker and Martin, 2018) as well as to study domestication history (da Fonseca et al., 2015) or plant pathogens (Yoshida et al., 2014).
Likewise, herbarium materials could be a resource of chemical data potentially relevant for chemotaxonomy (Cook et al., 2009; Yilmaz et al., 2012), chemical ecology (Zangerl and Berenbaum, 2005), environmental bioindicators (Foan et al., 2010; Monforte et al., 2015) as well as drug discovery and authentication (Saslis-Lagoudakis et al., 2015; Rønsted et al., 2017).
However, the exploration of herbarium material for plant metabolite data is comparably understudied and the reliability of chemical data from herbarium samples is uncertain due to the expectation that plant specialized metabolites may not be well-preserved over longer time scales. Whereas alkaloids for example are generally considered highly stable (Cook et al., 2009; Dewick, 2009; Yilmaz et al., 2012), low molecular weight terpenoids tend to be both volatile and thermolabile and may be easily oxidized or hydrolyzed altering the chemical composition of the plant material dependent on the conditions during processing and storage of the plant material (Turek and Stinzing, 2013; Tasca et al., 2018).
It is therefore essential for any study using chemical data extracted from herbarium materials to test for potential age effects on results in order to verify interpretations (Jafari et al., 2018). Only few studies to date have systematically tested the stability of different compound classes in historical herbarium samples. An early study by Eloff (1999) showed no sample age effect on antibacterial activity of herbarium samples of Combretum erythophyllum (Burch.) Sond. and Helichrysum pedunculatum Hilliard & B.L. Burtt over almost 100 years and only minor differences were observed in chemical composition of flavonoids and terpenoids using thin layer chromatography (TLC). Using proton nuclear magnetic resonance (1HNMR) spectroscopic metabolite screening, Jafari et al. (2018) found no significant difference in metabolite profiles of recently dried and up to 25 year old fungi specimens. Cook et al. (2009) found no age effect on toxic diterpenoid alkaloid composition of Delphinium occidentale S. Watson from up to 100 year old herbarium specimens and Yilmaz et al. (2012) found no significant degradation of quinine alkaloids in 50–150 years old historical Cinchonae bark samples. Likewise, a study by Zangerl and Berenbaum (2005) found no sampling age effect on furanocoumarins in the phototoxic invasive Pastinaca sativa L. over 150 years. Consequently, these previous studies support the idea that herbarium specimens provide a significant untapped resource of chemical data in addition to data on distribution and morphological traits over time and space.
Plant specialized metabolites are selected through evolution for their biological activities and express some degree of phylogenetic clustering of different compound classes (e.g., Hegnauer, 1962–1973; Ehrlich and Raven, 1964; Rønsted et al., 2012). However, natural variation in plant chemical composition is common and attributed to both biotic (e.g., herbivory and microorganisms) and abiotic environmental conditions as well as potentially differential local chemotypes (Wink, 2003; Moore et al., 2014). The relative importance of different drivers of chemical diversity is an outstanding puzzle, but recent attention has focused on altitude as an explanatory parameter (Russo et al., 2013; Mahzooni-Kachapi et al., 2014; Senica et al., 2017; Pandey et al., 2018). In addition to abiotic components, correlation of chemical variation with altitude is hypothesized to be related to variable biotic pressure from herbivory and microbial communities (Abdala-Roberts et al., 2016; Maldonado et al., 2017; Pandey et al., 2018). Herbarium collections along with their associated data can provide specimens of verified geographical and altitudinal origin for further studies.
In this work, we tested the suitability of using herbarium specimens in plant chemical studies by assessing targeted and untargeted chemical variation of four Salvia species. Samples ranged from modern collections to 150 year old herbarium collections. We had three main objectives. (1) Our first objective was to investigate whether we could observe significant chemical variation between Salvia species using herbarium specimens, and compare the results to other studies that have used modern material. (2) Our second objective was to investigate age effects on Salvia chemical variation, testing for changes in chemical composition and diversity associated with increasing sample age. (3) Our final objective was to assess whether herbarium specimens could be used in answering ecological questions on Salvia chemical composition variation and diversity across altitudes and geographical regions in the four Salvia species.
Materials and Methods
Plant Material Sampling Strategy and Study Design
As a case study, we selected three Iranian medicinal Salvia species, which are all locally rare, and exhibiting a diversity of distributional and altitudinal ranges (Jafari Foutami and Akbarlou, 2017; Figure 1). For each of the four species we attempted to sample across the geographical distribution of the species. Salvia sclarea L. (clary sage; N = 10) is native to the Northern Mediterranean but has also become a weed outside its native range including North America, where it is called European sage (Ghani et al., 2010; Dickinson and Royer, 2014). Salvia multicaulis Vahl (syn. S. acetabulosa L.; N = 8) is native to Turkey and bordering countries (Tepe et al., 2004). Salvia aethiopis L. (N = 4) is naturally occurring in the Northern Mediterranean but has become a noxious weed in North America, where it is referred to as Mediterranean sage (Chalchat et al., 2001; Dickinson and Royer, 2014). Additionally, we included S. officinalis (N = 12) allowing for comparison with extensive literature and verified reference material adhering to the European Pharmacopeia standards (Council of Europe, 2014).
Figure 1. (A) Habitat of Salvia, Mazandaran province, Iran. (B) S. multicaulis. (C) S. sclarea. (D) S. aethiopis. (E) S. multicaulis specimen no. 13. (F) S. sclarea specimen no. 30. (G) S. aethiopis specimen no. 31.
Salvia officinalis L. Ph.Eur 8.3. quality leaf reference material was obtained from Alfred Galke GmbH, Germany. Fresh samples of S. aethiopis, S. multicaulis and S. sclarea were collected in Iran in 2017 and air-dried at room temperature. Herbarium material of S. aethiopis, S. multicaulis, S. officinalis, and S. sclarea was obtained from Herbarium C of the Natural History Museum of Denmark, University of Copenhagen spanning 150 years of collecting across the Mediterranean (Figure 2).
Figure 2. Map of collections with shape and color representing species (note four samples for which we had no geographic information are excluded from the map). Maps were constructed using ggmap (Kahle and Wickham, 2013).
Taxonomic identity of specimen was confirmed to species morphologically by Isa Jafari Foutami. Collection year was recorded from labels and are listed in Table 1 together with altitude and GPS coordinates. However, in most cases, GPS coordinates and in a few cases altitude had to be inferred from the locality description on the labels. Details of all plant materials are listed in Table 1.
Terpenoid Extraction and Analysis
Twenty-Five Milligram leaf material was ground using a mortar and pestle under liquid N2 and transferred to a vial (Supelco, Pennsylvania, USA). Seven Hundred Microliter analytical grade hexane (Sigma-Aldrich, Denmark) was added, the sample was vortexed for 10 s and then incubated on a shaker at 37°C for 2 h. Samples were then vortexed again for 10 s and left for 24 h to allow tissue to settle. Approximately 200 μL of the hexane extract was transferred into a weighed glass GC vial with a limited volume insert and kept at −20°C until GC-MS analysis. The remainder of the sample was left uncapped at 65°C until the solvent was evaporated. Vials were reweighed to obtain the dry mass of leaf material. Samples were analyzed in triplicate.
GC–MS analyses were carried out using an Agilent 6890N Gas Chromatograph equipped with a split/splitless injector (200°C), a HP-5MS capillary column (30 m × 0.25 mm; film thickness 0.25 μm), and coupled with an Agilent 5975 MS Detector (MSD), operating in the electron impact (EI) mode at 70 eV. The carrier gas was helium (1.0 mL/min), and the oven temperature was programmed to increase from 60°C to 280°C at a rate of 3°C/min. The injected volume was 2 μL.
Chromatograms were analyzed both as untargeted data using tentative identifications based on the mass spectra in the NIST 8.0 library (National Institute of Standards and Technology, Gaithersburg, MD, USA) and as targeted data using 20 standard compounds.
Commercially available pure chemical certified reference material standards of common Salvia constituents (Russo et al., 2013; Hatipoglu et al., 2016; Craft et al., 2017) were obtained from Sigma-Aldrich, Germany (Table 2). Purity of the commercial standards was not investigated experimentally and the approach does therefore not guarantee no degradation of the standards could have happened. However, for the targeted approach, all samples were analyzed using the same standards.
Table 2. Average percentage (standard deviation) of standard compounds in targeted dataset (monoterpene hydrocarbons, oxygenated monoterpenes, and sesquiterpenes) compared with Hatipoglu et al. (2016) and Raal et al. (2007).
A dilution series of the standard compounds in hexane was made and analyzed as samples: linear regression was used to calculate the concentrations of samples (R2 ≥ 0.886 for individual compounds). The set of standards included monoterpene hydrocarbons (α-Pinene, Camphene, β-Pinene, β-Myrcene, β-Cymene, β-Phellandrene, Limonene, Terpinolene, 3-Carene, α-Ocimene, γ-Terpinene, Aromandendrene), oxygenated monoterpenes (Linalool, Camphor, Borneol, Bornyl acetate, Eucalyptol), and sesquiterpene hydrocarbons (Aromadendrene, β-Caryophyllene, Humulene, Nerolidol).
GC-MS chromatograms were processed using PARADISe, a PARAFAC2 based deconvolution and identification system for direct analysis of complex raw GC-MS data (Johnsen et al., 2017). The targeted and untargeted data matrices are provided as Supplementary Material online (Supplementary Tables S1, S2). Triplicates were averaged and a number of samples did not have triplicates due to sample failure (sample 1, 2, 28, and 30). Compounds with retention times between α-Pinene (8.3 min) and Camphor (28.4 min) were retained for further analysis and compounds with zero or negative values were excluded.
All statistical analyses were performed using R statistical software (version 2.14.9). Initially untargeted data was converted into a Bray-Curtis similarity matrix and non-metric multidimensional scaling was performed using the Vegan package (Oksanen et al., 2013), which was visualized using ggplot2 (Wickham, 2016). A significant species effect on the untargeted chemical composition was tested using multivariate generalized linear modeling followed by analysis of variance (MGLM-ANOVA), which was performed using the manyglm and anova functions within the MVABUND package (Wang et al., 2012). Given the strong expected effects of species on plant chemistry (e.g., Hegnauer, 1962–1973; Rønsted et al., 2012), PERMANOVAs were ran to test for the effects of collection year, altitude and geography on untargeted chemical composition, using the adonis function with the Vegan package. Due to incomplete datasets, the effect of each was tested for individually in a PERMANOVA. Furthermore, sample GPS coordinates were converted into a principle coordinates of neighbor matrix (PCNM), with the resulting first two principle components (PCNM1 and PCNM2) used within the PERMANOVA testing for geographical effects on the untargeted chemical composition.
One-way analysis of variance (ANOVA) was performed to test for significant differences in untargeted chemical richness between species. Meanwhile, mixed linear modeling (MLM) was performed using the lmer function from the package lme4 (Bates et al., 2014). In these, the significance of random effects (altitude and geography (as PCNM1 and PCNM2) were determined using the drop1 function, which performed likelihood ratio tests (chi-square), whilst accounting for variation associated with the random effect (species).
The targeted dataset consisted of 20 compounds for which standards were obtained as described above (Table 2). The targeted chemical composition was analyzed as before, undergoing nMDS for visualization), MGLM-ANOVA and PERMANOVAs to assess for compositional effects, and ANOVA and MLM to assess for differences in chemical richness. Given that standards allowed for reliable quantification, each individual compound also underwent generalized linear modeling (GLM) to test for species effects, with compound serving as the independent variable and species serving as the dependent using the glm function of the native stats package of R. MLM was performed to test for the effects of year of collection, altitude and geography (as PCNM1 and 2) whilst accounting for potential species effects. Individual compounds from the targeted data served as the independent variable, species served as the random effect, and either year of collection, altitude, or PCNM1 and PCNM2 (together) serving as the fixed effect.
After quality filtering a total of 285 compounds were within the untargeted dataset (Supplementary Table S2). Nearly all samples contained detectable levels of the majority of compounds, with untargeted chemical richness varying from 249 to 283 between samples, with no clear effect of species on the richness (ANOVA; df = 3, F-value = 1.16, P-value = 0.338). However, the untargeted chemical composition demonstrated clear clustering in the nMDS plot (Figure 3A), which proved highly significant (MGLM-ANOVA; Table 3).
Figure 3. Bray-Curtis similarity matrices underwent non-metric multidimensional scaling using the (A) untargeted and (B) targeted chemical datasets in order to visualize them. The shape and color of the points on the plots represent different species, and demonstrate clear clustering in both datasets. Numbers of samples refer to the list of materials (Table 1).
Within the targeted dataset, samples varied from 14 to 20 in the number of the 20 compounds analyzed, strongly differed between species (ANOVA; df = 3, F-value = 29.95, P-value = <0.001), with Salvia multicaulis and S. officinalis having significantly higher targeted chemical richness (19.7 and 19.4, respectively) than S. sclarea and S. aethiopis (15.6 and 16.0, respectively). Targeted chemical composition clearly clustered by species within the nMDS plot (Figure 3B), which was also highly significant (MGLM-ANOVA; Table 3).
Within the targeted dataset, S. officinalis and S. multicaulis consistently contained significantly higher concentrations when compared to the other two species (Figure 4). For example, borneol was the most abundant compound, ranging from 172 to 96,234 ng/μL, and were significantly higher in S. officinalis (31,954 μg/g) and S. multicaulis (21,964 μg/g) than averages in S. sclarea (436 μg/g), and S. aethiopis (675 μg/g) (Table 2). p-cymene was the second most abundant compound that was also concentrated in S. officinalis (11,559 μg/g) and S. multicaulis (6,774 μg/g) when compared to S. sclarea (51 ng/μL) and S. aethiopis (47 μg/g). Whilst camphor was present in lower abundance than borneol and p-cymene in S. officinalis (8291 μg/g) and S. multicaulis (5,273 μg/g), it was also present in comparable quantitates in S. sclarea (3,246 μg/g) and in two of the five S. aethiopis samples (average 2,696 μg/g). Terpinolene was also in abundance within S. officinalis (2,387 μg/g) whilst being almost absent from the other species. The other 15 compounds were present in relatively low amounts across all samples.
Figure 4. Boxplot for the 20 standard compounds analyzed within the targeted dataset. Salvia officinalis and S. multicaulis contained the highest concentrations of compounds, with borneol being the major compound in both species, and p-cymene, and camphor and α-pinene, in highest concentrations. Salvia sclarea had intermediate concentrations of the compounds, mainly in the form of camphor. S. aethiopis contained the fewest number of compounds, and when present, in the lowest concentrations.
Sampling Age Effects
Given the confirmation of species effects on plant chemical composition, we next investigated age effects on the chemical composition. PERMANOVAs for both the targeted and untargeted datasets did not demonstrate a significant age effect on chemistry (PERMANOVA; Table 3). There were no significant effects of age of sample on either targeted or untargeted chemical richness (MLM; Untargeted χ2 = 3.79, P-value = 0.051 and targeted χ2 = 0.07, P-value = 0.787). Two individual compounds significantly declined in concentration over time (MLM; Table 4), α-phellandrene (Figure 5A), which was a very minor constituent, and camphor that was present in all four species (Figure 5B). Total amount of the compounds in the targeted dataset also significantly declined over time (MLM; χ2 = 4.11, P-value = 0.042) (Figure 5C).
Table 4. Generalized linear modeling was performed to test for significant species effects on each of the 20 standards constituting the targeted dataset.
Figure 5. Plots illustrating concentration of α-phellandrene (A) and camphor (B) over time (year of collection). Both these and total chemical concentration of the 20 standards (C) significantly varied over the 150-year sampling period. The shape and color of the points on the graphs represent different species.
Altitudinal and Geographical Effects
Altitude did not significantly affect the targeted or untargeted chemical composition (PERMANOVA; Table 3) and chemical richness (MLM; χ2 = 0.182, P-value = 0.670 and χ2 = 0.563, P-value = 0.453 in the untargeted and targeted datasets, respectively). Altitude also did not affect a single individual compound in the targeted dataset (MLM; Table 4). Geographic variation too did not affect chemical composition (PERMANOVA; Table 3) nor did it affect a single individual compound in the targeted dataset (MLM; Table 4). However, geographic variation significantly affected chemical richness in the untargeted dataset (PCNM1: χ2 = 8.37, P-value = 0.004, PCNM2: χ2 = 7.19, P-value = 0.007) but not the targeted (PCNM1: χ2 = 0.06, P-value = 0.794, PCNM2: χ2 = 3.34, P-value = 0.068).
Terpenoid Composition of Salvia Species
The biological properties of essential oil of Salvia officinalis are attributed mainly to α-thujone and ß-thujone, camphor, and 1,8-cineole as reviewed by Raal et al. (2007). In the present study of herbarium samples, we also found monoterpenes to be the main fraction of compounds mainly consisting of borneol, p-cymene, camphor, and to a lesser extent camphene and terpinolene (Table 2). Whereas, high levels of borneol and camphor correspond to the findings of Raal et al. (2007), the high levels of p-cymene may reflect some degree of degradation of terpenoids, as p-cymene is often identified in aged oils (Turek and Stinzing, 2013). However, no age effect was observed for p-cymene.
The monoterpenes borneol, α-pinene, p-cymene, camphor, and camphene, were the main compounds found in S. multicaulis in the present study (Table 2). α-pinene, borneol, camphor, and camphene are also main compounds reported in other studies of S. multicaulis (e.g., Rustaiyan et al., 1999; Tepe et al., 2004; Morteza-Semnani et al., 2005; Bagci and Kocak, 2008; Karamian et al., 2013; Hatipoglu et al., 2016) in addition to 1,8-cineole, eucalyptol, bornyl acetate, and sesquiterpenes such as ß-caryophyllene and germacrene-D.
Salvia sclarea and S. aethiopis generally contained fewer compounds and in lower concentration than S. officinalis and S. multicaulis. In the survey of 45 Turkish Salvia species by Hatipoglu et al. (2016), both species were found to be rich in sesquiterpenes relative to monoterpenes. Our targeted dataset only included comparably few sesquiterpenes compared to monoterpenes. In S. aethiopis, we mainly found the oxygenated monoterpene camphor and lower amounts of borneol as well as the monoterpene hydrocarbon terpinolene and the sesquiterpenes ß-caryophyllene and α-humulene (Table 2). Other studies have primarily reported a range of sesquiterpenes from Salvia aethiopis including β-caryophyllene, bicyclogermacrene, germacrene-D, α-humulene, and α-copaene (e.g., Torres et al., 1997; Rustaiyan et al., 1999; Chalchat et al., 2001; Gulluce et al., 2006; Hatipoglu et al., 2016, and references therein). In S. sclarea, we found mainly the oxygenated monoterpenes camphor and borneol, which is in line with other studies reporting oxygenated monoterpenes such as linalyl acetate, linalool, and α-terpineol to be the main components (e.g., Gülçin et al., 2004; Farka et al., 2005; DŽamić et al., 2008; Ghani et al., 2010; Sharopov and Setzer, 2012). Previously, germacrene-D, β-caryophyllene, bicyclogermacrene sesquiterpenes have been reported from this species (Gülçin et al., 2004; Farka et al., 2005; DŽamić et al., 2008).
Among 108 volatile compounds across 45 Turkish Salvia species (Hatipoglu et al., 2016), both total yield and percentage of individual compounds were highly variable between species. α-pinene, camphene, β-pinene, 1,8-cineole, camphor, and borneol were the main chemical markers of monoterpene rich species, whereas β-caryophyllene, germacrene-D, β-bisabolene, bicyclogermacrene, caryophyllene oxide, and spathulenol were the main chemical markers in sesquiterpene rich species. In summary, several studies of essential oil components of different Salvia species have reported presence of a huge range of compounds, many in trace amounts, and other consistently present in higher amounts in specific species.
In the present study of herbarium specimens, we observed a significant species effect using both a targeted and an untargeted approach. Variation in study design including the number of compounds, geographical origin of samples, samples per species, and plant parts analyzed, makes it difficult to directly compare our findings with the literature. However, in general the number and amount of compounds as well as the main individual chemical compounds found in the present study are also reflected in the literature confirming that the species profiles we observe across 150-years of herbarium specimens are comparable to modern samples.
Suitability of Herbarium Specimens for Extraction of Plant Metabolite Data
We observed a strong species effect and a weak geographical effect on terpenoid chemical composition of four Salvia species across the Mediterranean and no overall effect of sampling age, although two individual compounds did change with age of samples. These findings suggests that chemical composition appears to be well preserved in herbarium samples over at least 100–150 years suggesting herbarium samples can be used for chemical screening as well as for preliminary studies of pharmacological activity, which is also supported by previous studies reporting little effect of sampling age on overall chemical profiles (Eloff, 1999; Zangerl and Berenbaum, 2005; Cook et al., 2009; Yilmaz et al., 2012; Jafari et al., 2018). Herbarium samples may therefore provide an untapped resource for preliminary studies as well as for large-scale comparative surveys across taxonomical and geographical ranges. Whereas overall chemical composition appears to be well preserved over 100–150 years, the concentrations of individual compounds may be affected and we would therefore suggest herbarium samples may be well-suited for qualitative studies, whereas caution is needed in the use of herbarium samples for quantitative studies depending also on the type of compounds of interest (Rønsted et al., 2017). At a larger scale, a wide and thorough phytochemical screening of herbarium samples from all over the world could give us a better understanding also of chemotaxonomic issues, and comparison with climatic data would allow for testing of long-term environmental impact.
Environmental Effect on Terpenoid Profiles
We observed a geographical effect on chemical richness in the untargeted but not in the targeted dataset of Salvia species across the Mediterranean. Geographic variation had no effect on chemical composition or on individual compounds. Russo et al. (2013) found chemical composition of S. officinalis essential oils to vary depending on environmental factors such as altitude, water availability and soil conditions in Italy. We did not observe an effect of altitude in the present study. However, our sampling covered a wide geographical range and therefore the potential effects of altitude alone may have been confounded by sampling across multiple ranges across such large scales as the Mediterranean. Future studies may disentangle geographical and environmental effects by more intensive sampling across single or multiple altitudinal gradients. However, it should be noted that sampling from herbaria is limited by the number of specimens available in the collection and herbarium specimens are mostly collected as individual specimens rather than representing populations, which limits the prospects of comparative environmental studies.
Many other studies have shown that the yield and chemical composition of essential oils varied with ecological factors and geographical areas (e.g., Uribe-Hernández et al., 1992; Salgueiro et al., 1997; Viljoen et al., 2006; Liu et al., 2015; Rezende et al., 2015; Jaradat et al., 2017). Essential oils play important biological functions related to environmental adaptation, protection against biotic and abiotic stresses, and pollinator attraction (Jassim and Naji, 2003; Zangerl and Berenbaum, 2005). Therefore, plants of the same species growing under different environmental conditions may differ in the composition of their essential oils in response to different environmental pressures (Weiss and Edwards, 1980; Salimpour et al., 2011). Over evolutionary time scales, unique chemotypes may eventually develop into separate genotypes adapted to different environmental conditions (Verpoorte et al., 2000; Heywood, 2002; Wink, 2003; Beccera, 2015). In addition to further comparison of environmental parameters, future studies may benefit from comparing genetic profiles of samples.
Salvia comprises nearly 1,000 species with distributions spread across the globe (Drew et al., 2017). Several Salvia species are used as food flavoring owing to their content of essential oils as well as in folk medicine for a range of conditions including microbial infections, inflammation, cancer, and malaria (Lu and Foo, 2002; Kamatou et al., 2008; Russo et al., 2013; European Medicines Agency, 2016; Hatipoglu et al., 2016).
Some species like Salvia officinalis are common and widespread, whereas others are narrow and potentially threatened endemics (Wood and Harley, 1989; Viney et al., 2006; Kahraman et al., 2012). A better understanding of the chemical composition of different Salvia species and how their chemical diversity is affected by environmental factors such as altitude can help inform both their local medicinal use as well as conservation policies and efforts of the threatened species.
In the present study, freshly collected and herbarium samples of four species of Salvia were used to explore the effect of sampling age on terpenoid chemical profiles. Our results show that chemical profiles are primarily driven by a species effect and to a lesser extent geography. Salvia multicaulis and S. officinalis displayed higher abundance of most compounds than S. aethiopis and S. sclarea. Sampling age had no effect on overall chemical composition in the untargeted approach, and only a slight effect in the untargeted dataset. Two of twenty targeted compounds, α-phellandrene, and camphor, significantly declined with sampling year.
NR conceived the idea together with IF, CB, and RR. IF sampled the specimens. IF conducted the chromatography-mass spectrometry analysis together with TM and RR. IF analyzed the data together with CB. IF drafted the manuscript together with NR, CB, and RR. All authors read and approved the final manuscript.
IF was supported by a Ph.D. secondment grant from Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran. CB was supported by a research grant from Aage V. Jensens Foundation, Denmark, project code 112172.
Conflict of Interest Statement
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
We thank Tao Li for advice on analyzing GC-MS data with PARADISe.
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fpls.2018.01877/full#supplementary-material
Table S1. Filtered GC-MS data for all samples of the targeted dataset including occurrence of the 20 standard compounds.
Table S2. GC-MS results for all specimens in the untargeted dataset of 285 compounds identified tentatively by comparison with the NIST 8.0 library.
Abdala-Roberts, L., Rasmann, S., Berny-Mier, Y., Terán, J. C., Covelo, F., Glauser, G., et al. (2016). Biotic and abiotic factors associated with altitudinal variation in plant traits and herbivory in a dominant oak species. Am. J. Bot. 103, 2070–2078. doi: 10.3732/ajb.1600310
Bagci, E., and Kocak, A. (2008). Essential oil composition of the aerial parts of two Salvia, L. (S. multicaulis Vahl. Enum and S. tricochlada Bentham) species from east Anatolian region (Turkey). Int. J. Sci. Technol. 3, 13–18. Available online at: http://web.firat.edu.tr/IJST/3-1/2_bagci-biy..pdf
Bates, D., Maechler, M., Bolker, B., and Walker, S. (2014). Ime4: Linear Mixed-Effects Models Using Eigen and S4. R package version 1.7, 1–23. Available online at: https://cran.r-project.org/web/packages/lme4/index.html (Accessed December 12, 2018).
Bebber, D. P., Carine, M. A., Wood, J. R., Wortley, A. H., Harris, D. J., Prance, G. T., et al. (2010). Herbaria are a major frontier for species discovery. Proc. Natl. Acad. Sci. U.S.A. 107, 22169–22171. doi: 10.1073/pnas.1011841108
Bieker, V. C., and Martin, M. D. (2018). Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections. Bot. Lett. 165, 409–418. doi: 10.1080/23818107.2018.1458651
Calinger, K. M. (2015). A functional group analysis of change in the abundance and distribution of 207 plant species across 115 years in north-central North America. Biodivers. Conserv. 24, 2439–2457. doi: 10.1007/s10531-015-0936-2
Cardoso, D., Särkinen, T., Alexander, S., Amorim, A. M., Bittrich, V., Celis, M., et al. (2018). Amazon plant diversity revealed by a taxonomically verified species list. Proc. Natl. Acad. Sci. U.S.A. 114, 10695–10700. doi: 10.1073/pnas.1706756114
Chalchat, J. C., Gorunovic, M. S., and Petrovic, S. D. (2001). Chemical compositions of two wild species of the genus Salvia, L. from Yugoslavia: Salvia aethiopis and Salvia verticillata. J. Essent. Oil Res. 13, 416–418. doi: 10.1080/10412905.2001.9699711
Cook, D., Gardner, D. R., Pfister, J. A., Welch, K. D., Green, B. T., and Lee, S. T. (2009). The biogeographical distribution of Duncecap Larkspur (Delphinium occidentale) chemotypes and their potential toxicity. J. Chem. Ecol. 35, 643–652. doi: 10.1007/s10886-009-9637-1
da Fonseca, R. R., Smith, B. D., Wales, N., Cappellini, E., Skoglund, P., Fumagalli, M., et al. (2015). The origin and evolution of maize in the southwestern United States. Nature Plants 1:14003. doi: 10.1038/nplants.2014.3
Davis, C. C., Willis, C. G., Connolly, B., Kelly, C., and Ellison, A. (2015). Herbarium records are reliable sources of phenological change driven by climate and provide novel insights into species' phenological cueing mechanisms. Am. J. Bot. 102, 1599–1609. doi: 10.3732/ajb.1500237
Drew, B. T., González-Gallegos, J. G., Xiang, C.-L., Kriebel, R., Drummond, C. P., Walker, J. B., et al. (2017). Salvia united: the greatest good for the greatest number. Taxon 66, 133–145. doi: 10.12705/661.7
DŽamić, A., Soković, M., Ristić, M., Grujić-Jovanović, S., and Vukojević, J. (2008). Chemical composition and antifungal activity of Salvia sclarea (Lamiaceae) essential oil. Arch. Biol. Sci. 60, 233–237. doi: 10.2298/ABS0802233D
European Medicines Agency (2016). European Union Herbal Monograph on Salvia officinalis L., Folium. EMA/HMPC/277152/2015. Available online at: http://www.ema.europa.eu/docs/en_GB/document_library/Herbal_-_Herbal_monograph/2017/07/WC500231355.pdf, Accessed 2-6-2018.
Everill, P. H., Primack, R. B., Ellwood, E. R., and Melaas, E. K. (2014). Determining past leaf-out times of New England's deciduous forests from herbarium specimens. Am. J. Bot. 101, 1293–1300. doi: 10.3732/ajb.1400045
Farka, P., Hollá, M., Tekel, J., Mellen, S., and Vaverková, T. (2005). Composition of the essential oils from the flowers and leaves of Salvia sclarea L. (Lamiaceae) cultivated in Slovak Republic. J. Essent. Oil Res. 17, 141–144. doi: 10.1080/10412905.2005.9698858
Foan, L., Sablayrolles, C., Elustondo, D., Lasheras, E., González, L., Ederra, A., et al. (2010). Reconstructing historical trends of polycyclic aromatic hydrocarbon deposition in a remote area of Spain using herbarium moss material. Atmos. Environ. 44, 3207–3214. doi: 10.1016/j.atmosenv.2010.05.019
Funk, V. (2014). 100 Uses of an Herbarium. Division of Botany. The Yale University Herbarium. Available online at: http://botany.si.edu/documents/2003_Funk_100Uses.pdf (Accessed July 03, 2018).
Ghani, A., Ebrahimpour, A., Tehrani-far, A., and Hassanzadeh-Khayyat, M. (2010). Evaluation of growth and development adaptability and medicinal ornamental potential of Clary sage (Salvia sclarea L.) cultivated in Mashhad climatic conditions. J. Plant Prod. 17, 77–90.
Gülçin, I., Uguz, M. T., Oktay, M., Beydemir, S., and Küfrevioglu, Ö. I. (2004). Evaluation of the antioxidant and antimicrobial activities of clary sage (Salvia sclarea L.). Turk. J. Agric. Forestry 28, 25–33. Available online at: https://wwws.tubitak.gov.tr/agriculture/issues/tar-04-28-1/tar-28-1-4-0309-2.pdf
Gulluce, M., Ozer, H., Baris, O., Daferera, D., Sahin, F., and Polissiou, M. (2006). Chemical composition of the essential oil of Salvia aethiopis L. Turk. J. Biol. 30, 231–233. Available online at: https://wwws.tubitak.gov.tr/biology/issues/biy-06-30-4/biy-30-4-7-0601-3.pdf
Hardion, L., Verlaque, R., Saltonstall, K., Leriche, A., and Vila, B. (2014). Origin of the invasive Arundo donax (Poaceae): a trans-Asian expedition in herbaria. Ann. Bot. 114, 455–462. doi: 10.1093/aob/mcu143
Hatipoglu, S. D., Zorlu, N., Dirmenci, T., Goren, A. C., Ozturk, T., and Topcu, G. (2016). Determination of volatile organic compounds in fourty five Salvia species by thermal desorption-GC-MS technique. Rec. Nat. Products 10, 659–700.
Heywood, V. H. (2002). “The conservation of genetic and chemical diversity in medicinal and aromatic plants,” in Biodiversity: Biomolecular Aspects of Biodiversity and Innovative Utilization, ed B. Sener (New York, NY: Springer), 13–22.
Jafari Foutami, I., and Akbarlou, A. (2017). Traditional and local use of medicinal plants by local communities in Hezar Jerib summer area, north of Iran. J. Herbal Drugs 8, 27–39. doi: 10.18869/JHD.2017.27
Jafari, T., Alanne, A. L., Issakainen, J., Pihlaja, K., and Sinkkonen, J. (2018). Suitability of dried herbarium specimens for NMR metabolomics of mushrooms. A comparison of four species of the genera Kuehneromyces and Hypholoma (Strophariaceae). Fungal Biol. 122, 138–146. doi: 10.1016/j.funbio.2017.11.007
James, S. A., Soltis, P. S., Belbin, L., Chapman, A. D., Nelson, G., Paul, D. L., et al. (2018). Herbarium data: global biodiversity and societal botanical needs for novel research. Appl. Plant Sci. 6:e1024. doi: 10.1002/aps3.1024
Jaradat, N., Adwan, L., K'aibni, S., Zaid, A. N., Shtaya, M. J. Y., Shraim, N., et al. (2017). Variability of chemical compositions and antimicrobial and antioxidant activities of Ruta chalepensis leaf essential oils from three Palestinian regions. BioMed. Res. Int. 2017:2672689. doi: 10.1155/2017/2672689
Kahle, D., and Wickham, H. (2013). ggmap: spatial visualization with ggplot2. R J. 5, 144–162. Available online at: https://rdrr.io/cran/ggmap/
Kahraman, A., Bagherpour, S., Karabacak, E., Dogan, M., Dogan, H. M., Uysal, I., et al. (2012). Reassessment of conservation status of the genus Salvia (Lamiaceae) in Turkey, I. I. Turk. J. Bot. 36, 103–124. doi: 10.3906/bot-1007-2
Kamatou, G. P., Makunga, N. P., Ramogola, W. P., and Viljoen, A. M. (2008). South African Salvia species: a review of biological activities and phytochemistry. J. Ethnopharmacol. 119, 664–672. doi: 10.1016/j.jep.2008.06.030
Karamian, R., Asadbegy, M., and Pakzad, R. (2013). Essential oil compositions and in vitro antioxidant and antibacterial activities of the methanol extracts of two Salvia species (Lamiaceae) from Iran. Int. J. Agric. Crop Sci. 5, 1171–1182.
Kuzmina, M. L., Braukmann, T. W. A., Fazekas, A. J., Graham, S. W., Dewaard, S. L., Rodrigues, A., et al. (2017). Using herbarium-derived DNAs to assemble a large-scale DNA barcode library for the vascular plants of Canada. Appl. Plant Sci. 5:1700079. doi: 10.3732/apps.1700079
Lavoie, C. (2012). Biological collections in an ever changing world: Herbaria as tools for biogeographical and environmental studies. Perspect. Plant Ecol. Evol. Syst. 15, 68–76. doi: 10.1016/j.ppees.2012.10.002
Liu, W., Liu, J., Yin, D., and Zhao, X. (2015). Influence of ecological factors on the production of active substances in the anti-cancer plant Sinopodophyllum hexandrum (Royle) T.S. Ying. PLoS ONE 10:e0122981. doi: 10.1371/journal.pone.0122981
Mahzooni-Kachapi, S., Mahdavi, M., Jouri, M. H., Akbarzadeh, M., and Roozbeh-Nasiraei, L. (2014). The effect of altitude on chemical compositions and function of essential oils in Stachys lavandulifolia Vahl. (Iran). Int. J. Med. Arom. Plants 4, 107–116. Available online at: https://pdfs.semanticscholar.org/e9fc/45fe812189fb97446d79971d834fd8fe02db.pdf
Maldonado, C., Barnes, C., Cornett, C., Holmfred, E., Hansen, S. H., Antonelli, A., et al. (2017). Phylogeny predicts the quantity of antimalarial alkaloids within the iconic yellow Cinchona bark (Rubiaceae: Cinchona calisaya). Front. Plant Sci. 8:391. doi: 10.3389/fpls.2017.00391
Martin, M. D., Olsen, M. T., Samaniego, J., Zimmer, E. A., and Gilbert, M. T. P. (2016). The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.). Ecol. Evol. 6, 3760–3771. doi: 10.1002/ece3.2143
Monforte, L., Tomás-Las-Heras, R., Del-Castillo-Alonso, M. Á., Martínez-Abaigar, J., and Núñez-Olivera, E. (2015). Spatial variability of ultraviolet-absorbing compounds in an aquatic liverwort and their usefulness as biomarkers of current and past UV radiation: a case study in the Atlantic-Mediterranean transition. Sci. Total Environ. 518–519, 248–257. doi: 10.1016/j.scitotenv.2015.03.006
Moore, B. D., Andrew, R. L., Kulheim, C., and Foley, W. J. (2014). Explaining intraspecific diversity in plant secondary metabolites in an ecological context. New Phytol. 201, 733–750. doi: 10.1111/nph.12526
Morteza-Semnani, K., Moshiri, K., and Akbarzadeh, M. (2005). The essential oil composition of Salvia multicaulis Vahl. from Iran. J. Essent. Oil Bear. Plants 8, 6–10. doi: 10.1080/0972060X.2005.10643412
Oksanen, J., Blanchet, F. G., Kindt, R., Legendre, P., McGlinn, D., Minchin, P. R., et al. (2013). Package ‘Vegan'. Community Ecology Package, Version 2.9. Available online at: https://cran.r-project.org/web/packages/vegan/index.html (Accessed December 12, 2018).
Pandey, G., Khatoon, S., Pandey, M. M., and Rawat, A. K. S. (2018). Altitudinal variation of berberine, total phenolics and flavonoid content in Thalictrum foliolosum and their correlation with antimicrobial and antioxidant activities. J. Ayurveda Integr. Med. 9, 169–176. doi: 10.1016/j.jaim.2017.02.010
Rezende, W. P., Borges, L. L., Santos, D. L., Alves, N. M., and Paula, J. R. (2015). Effect of environmental factors on phenolic compounds in leaves of Syzygium jambos (L.) Alston (Myrtaceae). Mod. Chem. Appl. 3:157. doi: 10.4172/2329-6798.1000157
Rivers, M. C., Taylor, L., Brummitt, N. A., Meagher, T. R., Roberts, D. L., and Nic Lughadha, E. (2011). How many herbarium specimens are needed to detect threatened species? Biol. Conserv. 144, 2541–2547. doi: 10.1016/j.biocon.2011.07.014
Rønsted, N., Iwanycki, N. E., Maldonado, C., Hassemer, G., Martinez-Swatson, K. A., Saslis-Lagoudakis, H., et al. (2017). The future of drug discovery – are collections needed? Sci. Danica. Series B Biol. 6, 253–266. Available online at: http://www.royalacademy.dk/en/Publikationer/Scientia-Danica/Series-B/Tropical-Plant-Collections
Rønsted, N., Symonds, M. R., Birkholm, T., Christensen, S. B., Meerow, A. W., Molander, M., et al. (2012). Can phylogeny predict chemical diversity and potential medicinal activity of plants? A case study of Amaryllidaceae. BMC Evolut. Biol. 12:182. doi: 10.1186/1471-2148-12-182
Russo, A., Formisano, C., Rigano, D., Senatore, F., Delfine, S., Cardile, V., et al. (2013). Chemical composition and anticancer activity of essential oils of Mediterranean sage (Salvia officinalis L.) grown in different environmental conditions. Food Chem. Toxicol. 55, 42–47. doi: 10.1016/j.fct.2012.12.036
Rustaiyan, A., Masoudi, S., and Monfared, A. (1999). Volatile constituents of three Salvia species grown wild in Iran. Flav. Fragr. J. 14, 276–278. doi: 10.1002/(SICI)1099-1026(199909/10)14:5<276::AID-FFJ825>3.0.CO;2-Y
Salimpour, F., Mazooji, A., and Akhoondi Darzikolaei, S. (2011). Chemotaxonomy of six Salvia species using essential oil composition markers. J. Med. Plants Res. 5, 1795–1805. Available online at: https://academicjournals.org/journal/JMPR/article-full-text-pdf/5E9BB8119112
Saslis-Lagoudakis, C. H., Iwanycki, N., Bruun-Lund, S., Petersen, G., Seberg, O., Jäger, A. K., et al. (2015). Identification of common horsetail (Equisetum arvense L.; Equisetaceae) using thin layer chromatography versus DNA barcoding. Sci. Rep. 5:11942. doi: 10.1038/srep11942
Senica, M., Stampar, F., Veberic, R., and Mikulic-Petkovsek, M. (2017). The higher the better? Differences in phenolics and cyanogenic glycosides in Sambucus nigra leaves, flowers and berries from different altitudes. J. Sci. Food Agric. 97, 2623–2632. doi: 10.1002/jsfa.8085
Sharopov, F. S., and Setzer, W. N. (2012). The essential oil of Salvia sclarea L. from Tajikistan. Rec. Nat. Products 6, 75–79. Available online at: http://www.acgpubs.org/doc/2018080619213810-RNP-1101-487.pdf
Silva, C., Besnard, G., Piot, A., Razanatsoa, J., Oliveira, R. P., and Vorontsova, M. S. (2017). Museomics resolve the systematics of an endangered grass lineage endemic to north-western Madagascar. Ann. Bot. 119, 339–351. doi: 10.1093/aob/mcw208
Tasca, J. A., Smith, C. R., Burzynski, E. A., Sundberg, B. N., Lagalante, A. F., Livshultz, T., et al. (2018). HPLC-MS detection of pyrrolizidine alkaloids and their N-oxides in herbarium specimens dating back to the 1850s. Appl. Plant Sci. 6:e1143. doi: 10.1002/aps3.1143
Tepe, B., Donmez, E., Unlu, M., Candanc, F., Dafererad, D., Vardar-Unlu, G., et al. (2004). Antimicrobial and antioxidative activities of the essential oils and methanol extracts of Salvia cryptantha (Montbret et Aucher ex Benth.) and Salvia multicaulis (Vahl). Food Chem. 84, 519–525. doi: 10.1016/S0308-8146(03)00267-X
Uribe-Hernández, C. J., Hurtado-Ramos, J. B., Olmedo-Arcega, E. R., and Martinez-Sosa, M. A. (1992). The essential oil of Lippia graveolens H.B.K. from Jalisco, Mexico. J. Essent. Oil Res. 4, 647–649. doi: 10.1080/10412905.1992.9698152
Viljoen, A. M., Petkar, S., Van Vuuren, S. F., Figueiredo, A. C., Pedro, L. G., and Barroso, J. G. (2006). The chemo-geographical variation in essential oil composition and the antimicrobial properties of “wild mint” - Mentha longifolia subsp. polyadena (Lamiaceae) in Southern Africa. J. Essent. Oil Res. 18, 60–65.
Wang, Y., Neumann, U., Wright, S. T., and Wartin, D. I. (2012). mvabund–an R package for model-based analysis of multivariate abundance data. Methods Ecol. Evolut. 3, 471–474. doi: 10.1111/j.2041-210X.2012.00190.x
Xu, C., Dong, W., Shi, S., Cheng, T., Li, C., Liu, Y., et al. (2015). Accelerating plant barcode reference library construction using herbarium specimens: improved experimental techniques. Mol. Ecol. Resour. 15, 1366–1374. doi: 10.1111/1755-0998.12413
Yilmaz, A., Nyberg, N. T., and Jaroszewski, J. W. (2012). Extraction of alkaloids for NMR-based profiling: exploratory analysis of an archaic Cinchona bark collection. Planta Med. 78, 1885–1890. doi: 10.1055/s-0032-1315396
Yoshida, K., Burbano, H. A., Krause, J., Thines, M., Weigel, D., and Kamoun, S. (2014). Mining herbaria for plant pathogen genomes: back to the future. PLoS Pathog. 10:e1004028. doi: 10.1371/journal.ppat.1004028
Keywords: age, altitude, collections, GC-MS, geography, herbarium, Salvia, terpene
Citation: Foutami IJ, Mariager T, Rinnan R, Barnes CJ and Rønsted N (2018) Hundred Fifty Years of Herbarium Collections Provide a Reliable Resource of Volatile Terpenoid Profiles Showing Strong Species Effect in Four Medicinal Species of Salvia Across the Mediterranean. Front. Plant Sci. 9:1877. doi: 10.3389/fpls.2018.01877
Received: 21 September 2018; Accepted: 05 December 2018;
Published: 18 December 2018.
Edited by:Flavia Guzzo, Università degli Studi di Verona, Italy
Reviewed by:Alejandro Urzua, Universidad de Santiago de Chile, Chile
Inger Martinussen, Norwegian Institute of Bioeconomy Research (NIBIO), Norway
Adam Matkowski, Wroclaw Medical University, Poland
Copyright © 2018 Foutami, Mariager, Rinnan, Barnes and Rønsted. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Nina Rønsted, firstname.lastname@example.org