Skip to main content

ORIGINAL RESEARCH article

Front. Plant Sci., 10 March 2022
Sec. Plant Nutrition
This article is part of the Research Topic Insights in Plant Nutrition: 2021 View all 13 articles

Sulfur Stable Isotope Discrimination in Rice: A Sulfur Isotope Mass Balance Study

  • 1Dipartimento di Scienze Agrarie e Ambientali—Produzione, Territorio, Agroenergia, Università degli Studi di Milano, Milan, Italy
  • 2Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Turin, Italy
  • 3Dipartimento di Scienze dell’Ambiente e della Terra, Università degli Studi di Milano-Bicocca, Milan, Italy

The use of sulfur (S) stable isotopes to study S metabolism in plants is still limited by the relatively small number of studies. It is generally accepted that less S stable isotope discrimination occurs during sulfate (SO42–) uptake. However, S metabolism and allocation are expected to produce separations of S stable isotopes among the different plant S pools and organs. In this study, we measured the S isotope composition of the main S pools of rice plants grown under different SO42– availabilities in appropriate closed and open hydroponic-plant systems. The main results indicate that fractionation against 34S occurred during SO42– uptake. Fractionation was dependent on the amount of residual SO42– in the solution, showing a biphasic behavior related to the relative expression of two SO42– transporter genes (OsSULTR1;1 and OsSULTR1;2) in the roots. S isotope separations among S pools and organs were also observed as the result of substantial S isotope fractionations and mixing effects occurring during SO42– assimilation and plant S partitioning. Since the S stable isotope separations conserve the memory of the physiological and metabolic activities that determined them, we here underline the potential of the 32S/34S analysis for the detailed characterization of the metabolic and molecular processes involved in plant S nutrition and homeostasis.

Introduction

Since 1865, sulfur (S) has been recognized as an essential element for plant growth (Sachs, 1865; Epstein, 2000). In plants, S is found in the amino acid cysteine and methionine, short peptides, vitamins and cofactors, and secondary compounds (Takahashi et al., 2011).

Plants mainly utilize sulfate (SO42–), an inorganic form of oxidized S present in the soil solution, to support their growth. SO42– is taken up by roots and allocated to various sink tissues, where it is stored in the cell vacuoles or assimilated into S organic (Sorg) compounds (Saito, 2004; Takahashi et al., 2011). To accomplish the assimilation of S into biomolecules, SO42– is first activated by ATP sulfurylase to adenosine-5′-phosphosulfate (APS), which is then channeled toward reduction or sulfation (Leustek et al., 2000). Most of the APS enters the reductive pathway along which sulfite and, subsequently, sulfide are produced through two sequential reactions catalyzed by APS reductase and sulfite reductase, respectively. Sulfide is finally incorporated into O-acetylserine (OAS) to form cysteine in a reaction catalyzed by OAS(thiol)lyase (Takahashi et al., 2011). In the sulfation pathway, the APS is first phosphorylated by APS kinase to form 3′-phosphoadenosine-5′-phosphosulfate, the donor of SO42– groups for a variety of sulfation reactions catalyzed by sulfotransferases (Günal et al., 2019).

Sulfur has four stable isotopes, namely, 32S, 33S, 34S, and 36S; their relative abundances are 0.9499, 0.0075, 0.0425, and 0.0001 atom fraction, respectively (De Laeter et al., 2003). Mass differences between the S isotopes result in small but significant variations in their chemical and physical properties, which may produce considerable separation of the S isotopes during chemical reactions. The most abundant isotopes, i.e., 32S and 34S, are now commonly measured using elemental analyzers coupled with Isotope Ratio Mass Spectrometers (IRMS), and S isotope abundance is generally reported in δ notation (δ34S) as parts per thousand (‰) deviation relative to the Vienna-Cañon Diablo Troilite (VCDT; Coplen and Krouse, 1998) standard as follows:

δ 34 S ( ) = R s a m p l e - R s t a n d a r d R s t a n d a r d 1 , 000

where Rsample and Rstandard are the isotope ratios (34S/32S) of the sample and standard, respectively.

Unlike what has happened with carbon and nitrogen, the natural abundance S stable isotope analysis techniques have so far scarcely been employed to study S allocation and metabolism in plants (Trust and Fry, 1992; Tcherkez and Tea, 2013), mainly due to the lack of knowledge about the 32S/34S isotope effects occurring during S metabolism and partitioning among the different organs. Most of the irreversible reactions involving S discriminate between 32S and 34S by favoring the lighter 32S isotope, thus enriching in 34S the residual substrate molecules left behind. That is to say that irreversible reactions that do not consume all the substrate may likely produce a detectable separation of the S stable isotopes, i.e., a fractionation, at natural abundance, providing crucial insights into the understanding of S metabolic fluxes inside the plants, without the need for costly labeling experiments with radioactive (35S) or stable (34S) isotopes (Tcherkez and Tea, 2013).

Sulfate uptake and allocation in plants involve a family of SO42– transporter proteins whose activities are tightly regulated and coordinated with those of the assimilation pathways to control plant S homeostasis (Buchner et al., 2004; Gigolashvili and Kopriva, 2014; Sacchi and Nocito, 2019; Takahashi, 2019). A few pioneering studies indicated that a less S isotope discrimination occurs during SO42– uptake since the isotope composition measured for plant total S (Stot) is typically depleted in 34S by 1–2‰ with respect to that measured for the SO42– source feeding the plants (Mekhtiyeva, 1971; Krouse et al., 1991). In contrast, less is known about the S isotope composition of the SO42– ions in the plant tissues, which should reflect the metabolic activities in which SO42– is involved as a substrate. Although the isotope effects linked to SO42– metabolism largely remain to be investigated in plants, it is possible to suppose that reductive SO42– assimilation fractionates against 34S, since it involves changes in the covalent bonding of the S atoms (Rees, 1973). Significant isotope effects have been reported for bacterial SO42– reduction, which enriches both the sulfide produced in the lighter 32S isotope and the remaining SO42– in the heavier 34S isotope (Thode et al., 1949; Kemp and Thode, 1968).

This study presents a detailed study on the dynamics of S stable isotopes occurring in appropriate closed or steady-state hydroponic-plant systems to dissect the 32S/34S isotope effects associated with SO42– uptake, allocation, and metabolism in rice plants. In this study, we also provided the first complete S isotope mass balance in rice which considers organic and inorganic S pools in roots and shoots.

Materials and Methods

Plant Material and Pre-growing Conditions

Rice (Oryza sativa L. cv. Vialone Nano) caryopses were surface sterilized with 70% (v:v) ethanol for 1 min, washed three times with sterile deionized water, and finally sown on filter paper saturated with deionized water to be incubated in the dark at 26°C. After 7 days, seedlings selected for uniform growth were transferred into 3-L plastic tanks (18 seedlings per tank), containing the following complete nutrient solution: 1.5 mM KNO3, 1 mM Ca(NO3)2, 100 μM MgSO4, 250 μM NH4H2PO4, 25 μM Fe-EDTA, 46 μM H3BO3, 9 μM MnCl2, 1 μM ZnCl2, 0.3 μM CuCl2, 0.1 μM (NH4)6Mo7O24, and 30 μM Na2O3Si (pH 6.5). Seedlings were kept for a 14-days pre-growing period in a growth chamber maintained at 26°C and 80% relative humidity during the 16-h light period and at 22°C and 70% relative humidity during the 8-h dark period. The photosynthetic photon flux density was 400 μmol m–2 s–1. Nutrient solutions were renewed two times a week to minimize nutrient depletion. At the end of the pre-growing period, roots were gently washed for 30 min in 3 L of deionized water (>18.2 MΩ cm). Plants were then transferred into fresh solutions and used in two distinct experimental setups (A and B). The parts of the plants were sampled, frozen in liquid N2, and stored at −80°C for further analysis.

Experimental Setup and Tissue Sampling

In experimental setup A, pre-grown rice plants were transferred into fresh complete nutrient solutions and then grown further, under the same conditions described before, for 3–11 days, not renewing the growing media. Both plants and nutrient solutions were sampled at the beginning of the experiment and every day (starting from the third day).

In experimental setup B, pre-grown rice plants were transferred into fresh complete nutrient solutions (+SO42–) or fresh minus sulfate nutrient solutions (−SO42–), in which an equimolar amount of MgCl2 replaced MgSO4. Plants were grown under these conditions for 48 or 72 h by renewing the growing media every day.

In both the experimental setups, before sampling, plant roots were washed for 30 min in 3 L of deionized water to remove SO42–, which was not absorbed, from the root apoplast. After washing, plants were gently blotted with paper towels, shoots were separated from roots, and then, both were frozen in liquid N2 and stored at −80°C for further analysis.

Xylem Sap Sampling

In each sampling period (experimental setup B in the presence of SO42–), the shoots of four rice plants were cut at 1 cm above the roots with a microtome blade to collect, with a micropipette, the xylem sap exuded from the lower cut surface during a 90-min period (Maghrebi et al., 2021).

Preparation of Samples for Sulfur Isotope Analysis and Quantitative Determination of the Sulfur Pools

Frozen samples were ground to a fine powder using mortar and pestle in liquid N2 and stored frozen in a cryogenic tank.

For Stot analysis, powder samples of 5 g [fresh weight (FW)] were digested at 150°C in 10 ml 2:1 (v:v) nitric:perchloric acid mixture, in order to quantitatively convert all the S forms into SO42– (Blair and Till, 2003). Samples were then added with 1 ml of concentrated HCl and finally evaporated to dryness at 200°C to release any HNO3 still present. The mineralized material was dissolved in 50 ml of deionized water and then brought to pH 2.0 with a tiny volume of 6 N HCl.

Sulfate was extracted from roots and shoots by homogenizing powder samples of 5 g (FW) in 50 ml of deionized water. After heating at 80°C for 40 min, the extracts were filtered and then brought to pH 2.0 with a tiny volume of 6 N HCl.

Residual nutrient solutions were boiled to evaporate water until their volumes were reduced to 50 ml. Samples were then filtered and brought to pH 2.0 with 6 N HCl.

Xylem sap samples were diluted with deionized water to a final volume of 50 ml, filtered, and then brought to pH 2.0 with a tiny volume of 6 N HCl.

Aliquots of 2 ml were collected from each diluted sample for the quantitative determination of SO42–, using the turbidimetric method described by Tabatabai and Bremner (1970). The SO42– ions of each sample were precipitated overnight as BaSO4 by adding 2.5 ml of a 0.5 M BaCl2 solution. BaSO4 was then collected by centrifugation, washed two times in 2 ml of deionized water, dried at 80°C, ground to a fine powder, and finally used for the S isotope analyses.

The amount of the Sorg pool of both root and shoot extracts was estimated as follows:

S org = S tot - SO 4 2 -

Sulfur Isotope Analysis

The δ34S values of samples were measured using a Flash 2000 HT elemental analyzer coupled, via a ConFLo IV Interface, with a Delta V Advantage IRMS and interconnected to the software Isodat 3.0 (Thermo). The reaction tube, packed with tungstic oxide and copper wires separated by Quartz wool, was maintained at 1,020°C. The He carrier gas flow was 150 ml min–1. The O2 purge for flash combustion was 3 s at a flow rate of 250 ml min–1 per sample. The temperature of the gas chromatography separation column was 90°C. The SO2 reference gas pulse was introduced three times (20 s each) at the beginning of each run.

Samples (BaSO4 precipitates and reference materials) were weighed in tin capsules. Capsules were carefully closed by folding them with cleaned tweezers and then transferred to the autosampler. The run time of the analysis was approximately 500 s for a single run. The analysis of each sample was performed five times. Calibration was performed using three secondary reference materials provided by the International Atomic Energy Agency (IAEA): IAEA-S-1 (δ34S = −0.30 ± 0.03‰); IAEA-S-2 (δ34S = 22.62 ± 0.08‰); IAEA-S-3 (δ34S = −32.49 ± 0.08‰). Two in-house standards were used for normalization and analytical quality assurance.

The data are reported in δ34S notation, which is standardized to the VCDT international reference scale as follows:

δ 34 S ( ) = R s a m p l e - R s t a n d a r d R s t a n d a r d 1 , 000

The mass spectrometric uncertainty (1 σ) on the individual δ34S measurements was better than 0.05‰.

The δ34S values of the Sorg pool were estimated by imposing the following mass balance:

δ 34 S_S tot S tot = ( δ 34 S_SO 4 2 - SO 4 2 - ) + ( δ 34 S _ S org S org )

where SO42– and Stot are the amount of SO42– and Stot, respectively, measured in the same sample.

Fractionation factors (ΔL/H), i.e., in positive per mil (‰) units, were calculated by fitting an approximation of the Rayleigh equation to the data obtained by measuring δ34S values of the residual SO42– in the hydroponic solution (δ34S_SO42–res), according to Fry (2006). For these purposes, the following equation was used:

δ 34 S _ SO 4 res 2 - = δ 34 S _ SO 4 source 2 - - Δ L / H ln ( f )

where f is the fraction of SO42– remaining in the hydroponic solution, and δ34S_SO42–source is the initial S isotope composition of the S source.

Finally, the trajectories of the δ34S values of the instantaneous product (Sist) that forms, inside the plants, instant by instant in time were calculated using the following equation:

δ 34 S _ S ist = δ 34 S _ SO 4 source 2 - - Δ ( L / H ) [ 1 + ln ( f ) ]

RNA Extraction and Quantitative Real-Time PCR Analysis

Total RNA was extracted from rice roots using TRIzol Reagent (Life Technologies Corporation, Carlsbad, CA, United States) and then purified using PureLink ® RNA Mini Kit (Life Technologies Corporation, Carlsbad, CA, United States), according to the manufacturer’s instructions. Contaminant DNA was removed on-column using PureLink ® DNase (Life Technologies Corporation, Carlsbad, CA, United States). The first-strand cDNA synthesis was carried out using the SuperScript™ III First-Strand Synthesis SuperMix for quantitative real-time PCR (qRT-PCR; Life Technologies Corporation, Carlsbad, CA, United States), according to the manufacturer’s instructions.

The qRT-PCR analysis of OsSULTR1;1 (LOC_Os03g09970) and OsSULTR1;2 was performed on the first-strand cDNA in a 20 μl reaction mixture containing GoTaq ® qPCR Master Mix (Promega) and the specific primers, using an ABI 7300 Real-Time PCR system (Applied Biosystems). The relative transcript level of each gene was calculated by the 2–ΔΔCt method using the expression of the OsS16 (LOC_Os11g03400) gene as reference. Primers for qRT-PCR are listed in Supplementary Table 1.

Statistical Analysis

Quantitative values are presented as mean ± SEM of three independent experiments run in duplicate (n = 3). Two distinct 3-L tanks were used for each condition analyzed in each independent experiment. ANOVA was carried out using SigmaPlot for Windows version 11.0 (SYSTAT Software, Inc., San Jose, CA, United States). The significant values were adjusted for multiple comparisons using the Bonferroni correction. The Student’s t-test was used to assess the significance of the observed differences between the values measured in root and shoot.

Results

Sulfur Isotope Mass Balance in a Closed Hydroponic-Rice System (Experimental Setup A)

Potential 32S/34S isotope effects occurring during SO42– uptake were investigated by setting up a closed hydroponic-rice system (Figure 1A) in which a finite amount of substrate (i.e., the SO42– in the nutrient solution) was continuously removed from the solution, by the activity of the SO42– transporters of the roots, and converted into a final product (i.e., Stot). Using this system, we performed serial sacrifice experiments in which plant growth was terminated every 24 h (starting from the third day) for the S isotope analyses of both substrates and products.

FIGURE 1
www.frontiersin.org

Figure 1. Time course of S partitioning in a closed hydroponic-rice system. (A) Experimental setup: A finite amount of sulfate (SO42–) is continuously removed from the hydroponic solution and converted into the total S of the plant (Stot). (B) Plant total biomass accumulation. (C) Residual SO42– in the hydroponic solution over time. (D) Stot accumulation over time. (E) Residual SO42– in the hydroponic solution vs. plant Stot accumulation. (F) Plant Stot concentration vs. SO42– concentration in the hydroponic solution. Data are means ± SE of three independent experiments run in duplicate (n = 3).

During the experimental period (264 h), (i) plants continuosly grown (Figure 1B) and removed 98% of the SO42– initially present in the nutrient solution (Figure 1C), (ii) SO42– absorbed was quantitatively recovered in the plants as Stot (Figures 1D,E), and (iii) no significant losses of S occurred during the growth (Figure 1E). The Stot concentration of the plants ranged from 121.2 (at the beginning of the experiment) to 98.6 μmol g–1 dry weight (DW; at the end of the experiment), while the SO42– concentration in the nutrient solution ranged from 100 to 6.5 μM, indicating that the regulation of plant S homeostasis occurred during SO42– absorption (Figure 1F).

Figure 2A reports δ34S data as a function of the fraction of SO42– remaining in the hydroponic solution (f). The δ34S of residual SO42– in both the hydroponic solution and plant Stot changed over time, tending toward higher values as f decreased. The δ34S values of the residual SO42–34S_SO42–) increased from a minimum of −1.92‰ (at the beginning of the experiment) to a maximum of −0.21‰ (at the final sampling). In contrast, the δ34S_Stot of the plants was always lower than the δ34S_SO42– of the S source (−1.92 ± 0.02‰) and increased from −3.32‰ (the starting isotope composition of total plant biomass) to −2.30‰ at the final sampling, indicating that SO42– uptake significantly enriches plant Stot in the lighter 32S isotope. It is worth noting that, due to mass balance in the closed system, the δ34S_Stot of the rice plants tended to the δ34S_SO42– of the initial S source as SO42– concentration in the external medium approached zero, indicating that (i) SO42– ions in the nutrient solution were the only S source used by plants and (ii) no significant loses/fractionations of S isotopes occurred during the experiments due to H2S gaseous emission (Wilson et al., 1978; Winner et al., 1981).

FIGURE 2
www.frontiersin.org

Figure 2. Sulfur isotope dynamic in the closed system and transcriptional analysis of OsSULTR1;1 and OsSULTR1;2. (A) S isotope dynamic as a function of the fraction (f) of SO42– remaining in the hydroponic solution. Black dashed line is the Rayleigh curve calculated over the entire f interval, while the black continuous lines are the Rayleigh curves calculated over the two phases: Phase I (1 ≤ f ≤ 0.31) and Phase II (f ≤ 0.21). Red continuous lines describe the trajectory of the calculated instantaneous product (Sist) over the two phases. The dashed green line indicates the δ34S_SO42– value of the initial S source. (B) Changes in the relative transcript levels of OsSULTR1;1 and OsSULTR1;2 in the roots. The numbers in brackets refer to the concentration of residual SO42– (expressed as μM) in the hydroponic solution corresponding to each f value. Data are means ± SE of three independent experiments run in duplicate (n = 3).

The isotope effects that occurred in the closed system were analyzed using an approximation of the Rayleigh equation describing isotope partitioning between two reservoirs as one of them decreases in size (Fry, 2006). The S isotope profile of the residual SO42– in the nutrient solution (Figure 2A) showed a marked deviation from a typical Rayleigh enrichment (R2 = 0.79; black dashed line) due to an unexpected data point distribution at the final steps of the experiment (f ≤ 0.21). Considering the Rayleigh fractionation model, it was possible to calculate a single fractionation factor, ΔL/H = 0.48 ± 0.09‰, which describes an average of the net fractionation along the overall trajectory (profile). However, data distribution could be more appropriately described by assuming that a dual-phase Rayleigh fractionation occurred during SO42– uptake. In the first phase (1 ≤ f ≤ 0.31), a significant isotope fractionation against 34S_SO42– took place (Δ1(L/H) = 1.09‰), while in the second phase (f ≤ 0.21), a less pronounced isotope effect [Δ2(L/H) = 0.16‰] was associated with SO42– uptake. Figure 2A also reports the calculated trajectories of the δ34S values of Sist that forms, inside the plants, instant by instant in time from the external SO42– due to SO42– uptake; such a product is always offset in the isotope composition of the substrate (δ34S_SO42–) by the fractionation factor ΔL/H (Fry, 2006). In each phase (I and II), S isotope fractionation (δ34S_SO42––δ34S_Sist) was practically independent of f, as can be easily observed by comparing the isotope signatures of the substrate and cumulative product for each data point.

Aiming to decompose the two phases into their physiological and molecular components, we performed a transcriptional analysis of OsSULTR1;1 and OsSULTR1;2, i.e., the main rice genes reasonably involved in SO42– uptake (Godwin et al., 2003; Kumar et al., 2011; Figure 2B). Results revealed that the transition from the two phases was associated with significant changes in the ratio between the transcript levels of the two genes: the OsSULTR1;2 transcript was always independent of f and was more abundant than the OsSULTR1;1 transcript during the first phase (1 ≤ f ≤ 0.31), while the OsSULTR1;1 transcript level rapidly increased in the second phase (f ≤ 0.21), when the SO42– concentration in the nutrient solution became limiting for plant growth [(SO42–) ≤ 37 μM; Figure 2B].

Sulfur Isotope Mass Balance in a Whole Plant: Steady-State vs. Sulfur Starvation (Experimental Setup B)

The possible 32S/34S isotope effects associated with both S partitioning among plant organs and cell metabolism were investigated by comparing plants pre-grown in complete nutrient solutions and then continuously maintained on media containing SO42– or deprived of SO42– for 72 h (experimental setup B). Nutrient solutions were changed every day to minimize the changes in the isotope signature of the S source (−1.92 ± 0.02‰) due to fractionation associated with SO42– uptake.

Results showed that the S isotope composition of the whole plants did not significantly change over time since similar δ34S_Stot values were measured at each time period (0, 48, and 72 h) in both of the growing conditions (Figure 3). At the beginning of the experiment (0 h), the Stot of the whole plants was significantly depleted in 34S by −1.40 ± 0.08‰ relative to the S source (Figure 3).

FIGURE 3
www.frontiersin.org

Figure 3. Experimental setup and 32S/34S isotope effects associated with S partitioning and metabolism in rice plants. Plants were pre-grown in complete nutrient solutions and then continuously maintained on media containing SO42– or deprived of SO42– for 72 h (experimental setup B). Stot, total S amount in a whole plant; δ34S_Stot, S isotope composition of the whole plant; Δ, 34S depletion relative to the S source (δ34S_SO42–source = −1.92 ± 0.02‰). Data are means ± SE of three independent experiments run in duplicate (n = 3).

Plants maintained in hydroponic solutions containing SO42– grew linearly in the observation period (Figure 4A). As expected, the concentrations of SO42–, Stot, and Sorg did not significantly change in both root and shoot over time (Figures 4B,C). The invariance of each S pool was associated with the invariance of their isotope signatures, indicating that plants reached metabolic and isotope steady-states (Figure 5). The Stot of root and shoot was significantly depleted in 34S by −1.94 ± 0.08‰ and −1.09 ± 0.09‰, respectively, relative to the S source (Figure 5A); moreover, δ34S_Stot values were significantly lower in the root than in the shoot in all the conditions analyzed (Figure 5A). In the root, the SO42– pools were significantly (P < 0.001) 34S-depleted relative to the S source, while in the shoot, they were significantly (P < 0.001) 34S-enriched relative to the same S source (Figure 5B). The Sorg pool of both root and shoot were significantly 34S-depleted with respect to the S source; interestingly, both the Sorg pools were also significantly 34S-depleted with respect to their relative SO42– pools of the cells (Figure 5C). Finally, no differences were found in comparing the δ34S_SO42– values of the SO42– pools in the xylem sap and in the whole root system (Figure 5D).

FIGURE 4
www.frontiersin.org

Figure 4. Changes in the concentration of the S pools (Stot, SO42–, and Sorg) in root and shoot of rice plants grown in the presence or in the absence of SO42– in the hydroponic solution. (A) Root and shoot fresh weight (FW) in the presence of SO42–. (B) Stot, SO42–, and Sorg in the root of plants grown in the presence of SO42–. (C) Stot, SO42–, and Sorg in the shoot of plants grown in the presence of SO42–. (D) Root and shoot FW in the absence of SO42–. (E) Stot, SO42–, and Sorg in the root of plants grown in the absence of SO42–. (F) Stot, SO42–, and Sorg in the shoot of plants grown in the absence of SO42–. Data are means ± SE of three independent experiments run in duplicate (n = 3). Different letters indicate significant differences between the samples at different times (P < 0.05).

FIGURE 5
www.frontiersin.org

Figure 5. Sulfur isotope composition of the main S pools in root and shoot and of SO42– in the xylem sap of rice plants grown in the presence of SO42– in the hydroponic solution. (A) S isotope composition of Stot in root and shoot. (B) S isotope composition of SO42– in root and shoot. (C) S isotope composition of Sorg in root and shoot. (D) S isotope composition of SO42– in xylem sap. Dotted lines indicate the δ34S value of the S source used in the experiment (δ34S_SO42–source = −1.92 ± 0.02‰). Data are means ± SE of three independent experiments run in duplicate (n = 3). Asterisks indicate significant differences (Student’s t-test; *0.001 ≤ P < 0.05; **P < 0.001) between root and shoot of plants sampled at the same time. Different letters indicate significant differences between the samples (root, shoot, or xylem sap) at different times (P < 0.05).

In contrast, SO42–-deprived plants dynamically allocated S previously absorbed during the preliminary growth phase, preserving both the overall S isotope signature (Figure 3) and the total amount of Stot over time (Figure 4). However, due to both continuous growth (Figure 4D) and S allocation processes, the Stot concentration in rice organs changed over time, decreasing linearly in both root (R2 = 0.993; Figure 4E) and shoot (R2 = 0.999; Figure 4F). The SO42– concentration sharply decreased over time in both root and shoot due to SO42– assimilation (Figures 4E,F). In fact, the concentration of the Sorg in the root slightly decreased over time from 7.26 ± 0.41 to 4.36 ± 0.14 μmol g–1 FW, while in the shoot, it remained relatively constant. The Stot isotope composition of both root and shoot did not change over time (Figure 6A) and was significantly 34S-depleted relative to the S source. As previously observed, the δ34S_Stot values were significantly lower in the root than in the shoot (Figure 6A). Differently, the SO42– pools of both root and shoot became progressively enriched in 34S over time. It is worth noting that the most pronounced changes in the SO42– isotope composition were observed in the shoot: the maximum variations observed at 72 h were 2.70 ± 0.05‰ and 6.71 ± 0.19‰ for root and shoot, respectively (Figure 6B). The Sorg pools of both roots and shoot were significantly 34S-depleted compared to the S source; their δ34S_Sorg values changed differently over time since, in the root, they increased moving from 0 to 48 h and then remained constant at 72 h, while in the shoot, a significant increase was observed when moving from 48 to 72 h (Figure 6C).

FIGURE 6
www.frontiersin.org

Figure 6. Sulfur isotope composition of the main S pools in root and shoot of rice plants grown in the absence of SO42– in the hydroponic solution. (A) S isotope composition of Stot in root and shoot. (B) S isotope composition of SO42– in root and shoot. (C) S isotope composition of Sorg in root and shoot. Data are means ± SE of three independent experiments run in duplicate (n = 3). Asterisks indicate significant differences (Student’s t-test; *0.001 ≤ P < 0.05; ** P < 0.001) between root and shoot of plants sampled at the same time. Different letters indicate significant differences between the samples (root and shoot) at different times (P < 0.05).

Discussion

It is generally assumed that terrestrial plants assimilate S from the soil (SO42–) and from the atmosphere (SO2) with less S isotope fractionation since the foliar δ34S values are generally intermediate between those of the soil and the atmosphere or near to one extreme (Kennedy and Krouse, 1990; Krouse et al., 1991). However, the correct evaluation of the isotope effects due to S acquisition needs a direct comparison between the isotope compositions of the Stot of a whole plant and the S source used by the same plant, since the δ34S_Stot value of a single plant organ may result from fractionations and mixing effects occurring during SO42– uptake, assimilation, and partitioning.

To address the S isotope effects during S acquisition, we performed an S isotope mass balance in a closed system, in which the accumulation of Stot in the plants is considered as the result of the continuous consumption of a unique and finite S source (SO42–) initially present in a hydroponic solution (Figure 1A). In such a model system, if fractionation occurs, the enrichment in a given isotope in one part of the system results in its depletion in the other, so that isotopic mass balance is always maintained (Fry, 2006).

Our data indicate that isotope discrimination against 34S occurred during SO42– uptake, which resulted in transient lighter S isotope compositions of the plants and concomitant 34S enrichments of the residual SO42– in the hydroponic solution (Figure 2A). Interestingly, fractionation exhibited two phases characterized by distinct fractionation factors [Δ1(L/H) and Δ2(L/H)] that can be considered as “isotope phenotypes” reflecting plant physiological adaptation to the SO42– concentrations in the nutrient solution, which changed during the experiment (Figures 1F, 2B). The maximum fractionation observed was associated with f values ranging from 1 to 0.31 (corresponding to external SO42– concentrations ranging from 100 to 50 μM), while the minimum isotope effect was associated with the smallest f values, when the concentration of SO42– in the nutrient solution became critical (≤37 μM) and was potentially able to induce an array of S-deficiency physiological responses (Maruyama-Nakashita et al., 2003), including changes in the expression of the root high-affinity SO42– transports, OsSULTR1;1 and OsSULTR1;2, involved in SO42– uptake (Figure 2B). Although a certain degree of functional redundancy may exist, OsSULTR1;2 is considered the major gene involved in SO42– uptake under normal conditions, while OsSULTR1;1 is a more specialized gene that is strongly induced under S limitation (Kumar et al., 2011). The prevalence of OsSULTR1;1 or OsSULTR1;2 under different environmental conditions could explain the two isotope phenotypes observed during plant SO42– acquisition, assuming that the different isotope effects may be associated with the activity of the two SO42– transporters. Thus, the plasticity of the isotope phenotype could reflect gene expression in response to changes in both environmental conditions and plant S-nutritional status.

Less information is currently available about the 32S/34S isotope effects occurring during S partitioning and metabolism in plants since the cycling of the S pools in a whole plant may attenuate the isotope differences between organs potentially caused by S reduction and assimilation. Most of the SO42– ions that are taken up by root are translocated to the shoot, where they are assimilated into organic compounds (Takahashi et al., 2011). However, part of SO42– is also assimilated into the root, and the continuous exchanges of SO42– and Sorg compounds occur in a shoot-to-root direction in order to ensure the S homeostasis of the root (Cooper and Clarkson, 1989; Bell et al., 1995; Yoshimoto et al., 2003; Larsson et al., 2006).

To analyze the isotope effects occurring during S partitioning and metabolism, we carried out experiments aimed at the following: (i) preventing possible perturbations due to the continuous changes of the δ34S_SO42– values of the external solution and (ii) obtaining rice plants with the same overall S isotope composition (Figure 3). In these experiments, plants can be considered systems continuously supplied by an S source that does not change in concentration and isotope composition.

As previously described, plants continuously grown in the presence of SO42– reached metabolic and S isotope steady-states characterized by the invariance of the concentration and the isotope signature of each S pool. It should be noted that the S isotope distribution between root and shoot observed in this study strongly differs from the pattern described by Tcherkez and Tea (2013), concerning the S natural isotope composition in different organs (roots, leaf, stem, glumes, and grains) of mature wheat. Such a discrepancy might depend on the growth conditions (closed hydroponic-plant system vs. field) or, more likely, on the different S nutritional status and/or growth stage of the plants considered in the two studies since S stable isotope separations conserve the memory of the physiological and metabolic activities that determined them. Finally, differences may also originate from the different distribution of the S assimilation enzymes in the leaf, since rice assimilates SO42– mainly in the bundle sheaths, while other species, also in the mesophyll (Hua et al., 2021).

The isotope composition of the SO42– pools of the root was lighter relative to the S source but heavier with respect to the expected composition calculated according to the isotope discrimination occurring during SO42– uptake at high external concentrations [i.e., δ34S_SO42– > δ34S_SO42–source–Δ1(L/H)]. Interestingly, SO42– translocation from root to shoot did not discriminate the S isotopes since no differences were found when comparing the isotope signatures of the SO42– ions in root and xylem sap (Figure 5). However, the SO42– pools of the shoot were significantly 34S-enriched with respect to the SO42– pools of both root and xylem sap. This was likely due to SO42– assimilation that, favoring the lighter 32S isotope, causes a 34S enrichment of the residual SO42– ions left behind. The occurrence of an S isotope separation during SO42– assimilation is consistent with the observation that the Sorg pools of the shoot were significantly depleted in 34S relative to both the SO42– pools of the shoot and the S source. Since the aerial portion of the plant is fed by the SO42– ions continuously translocated from root to shoot and the Stot of the shoot was lighter relative to the SO42– coming from the root, we can reasonably suppose that a non-negligible portion of the 34S-enriched SO42– of the shoot is translocated to the root. Thus, the isotope signature of the SO42– pool of the root could be the result of mixing effects due to the overall S isotope circulation, SO42– uptake, and local S assimilation. Assuming that during the S isotope steady-state, (i) the δ34S_SO42– values measured in the root are mainly influenced by root SO42– uptake and SO42– translocation from shoot to root, and (ii) the S isotope composition of the instantaneous SO42– that continuously enters the root cells should theoretically differ from the S source by the fractionation factor Δ1(L/H), so that

δ 34 S _ SO 4 ist 2 - = δ 34 S _ SO 4 source 2 - - Δ 1 ( L / H ) = - 1.92 - 1.09 = - 3.01

We can estimate the maximum amount of SO42– that, coming from the shoot, is translocated and accumulated into the root (defined as SO42–StoR) by imposing the following mass balance:

δ 34 S _ SO 4 root 2 - SO 4 root 2 - = δ 34 S _ SO 4 shoot 2 - SO 4 StoR 2 - + δ 34 S _ SO 4 ist 2 - ( SO 4 root 2 - - SO 4 StoR 2 - )

where δ34S_SO42–root is the steady-state isotope composition of the SO42– pool of the root, SO42–root is the total amount of the SO42– measured in the root, and δ34S_SO42–shoot is the isotope composition of the SO42– ions coming from the shoot. Solving the equation for the unknown SO42–StoR reveals that, in our conditions, 21.7% of the steady-state SO42– pool of the rice root is inherited from the shoot.

Although less information is currently available on the long-distance transport of SO42– from shoot to root, we can reasonably suppose that such an activity may involve the phloem and specific isoforms of SO42– transporters mediating the loading of SO42– into the sieve tubes (Takahashi, 2019). Feeding experiments with 35SO42– performed on Arabidopsis (Yoshimoto et al., 2003) support our finding, indicating the retranslocation of SO42– as an important activity in controlling root SO42– homeostasis and S isotope composition.

In contrast, during the growing period in the absence of SO42–, rice plants can be considered closed systems assimilating the SO42– ions previously absorbed during the preliminary growth phase and allocating the Sorg pools to optimize the distribution of the limited S resources between root and shoot. It is worth noting that in these conditions, the invariance of the Stot isotope composition of both root and shoot was associated with dramatic changes in the isotope composition of the relative SO42– and Sorg pools (Figure 6), mainly caused by the 32S/34S isotope effects occurring during SO42– assimilation. During the observation period, plants rapidly consumed the available SO42– pools: at the end of the experiment, the overall Sorg pool was about 94% of the Stot. The S isotope mass balance that was carried out considering the overall SO42– and Sorg pools of the plants (i.e., root + shoot; Table 1) revealed that continuous S assimilation progressively enriched both the overall Sorg pool in the lighter 32S isotope and the residual SO42– in the heavier 34S isotope, producing an apparent isotope separation that was closely dependent on the severity of the imposed S starvation, as indicated by calculated Δ values (Δ = δ34S_Sorg−δ34S_SO42–) that ranged from −3.29 ± 0.40 (at the beginning of the experiment) to −7.80 ± 0.18‰ (at 72 h). As expected, the most pronounced isotope separations were observed in the shoot, confirming the prominent role of the rice aerial portion in SO42– assimilation and S allocation (Takahashi et al., 2011).

TABLE 1
www.frontiersin.org

Table 1. Amount and sulfur (S) isotope composition of the overall SO42– and S organic (Sorg) pools of rice plants grown in the absence of SO42– in the hydroponic solution.

Conclusion and Perspectives

Our results provide an overview of the 32S/34S isotope effects occurring during SO42– uptake, partitioning, and metabolism in rice. The main results clearly show that SO42– uptake discriminates against 34S, enriching plant total biomass in the lighter 32S isotope relative to the S source. The S isotope discrimination observed during SO42– acquisition closely depends on the amount of SO42– in the growing medium, as well as on the plants’ molecular and physiological responses aimed at optimizing S nutrition under different environmental conditions. Although further experiments will be necessary to directly measure the isotope effect associated with the activity of a single SO42– transporter, we can reasonably conclude that OsSULTR1;1 and OsSULTR1;2 differently discriminate against 34S, producing S isotope phenotypes closely dependent on their relative expression.

Results also indicate that the steady-state S isotope composition of the different S pools of both root and shoot mainly results from the substantial S isotope fractionations occurring during SO42– assimilation and mixing effects due to the overall isotope circulation inside the whole plant. Finally, the extreme variability of the S isotope phenotypes observed under various S conditions underlines the potential of the δ34S analysis to provide information for further detailed characterization of the metabolic and molecular processes involved in plant S homeostasis, as well as of the plant S systemic fluxes occurring in different nutritional and environmental conditions, since the S stable isotope separations conserve the memory of the activities that determined them.

Data Availability Statement

The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.

Author Contributions

VC, MC, GS, and FN designed the experiments. VC, MM, and MC performed the experiments. FN analyzed the data and wrote the manuscript. All authors revised the manuscript draft and approved the final version.

Conflict of Interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Acknowledgments

The music of Gustav Mahler’s IX Symphony inspired this study. We thank Clarissa Lancilli for her precious support during the revision of the manuscript.

Supplementary Material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fpls.2022.837517/full#supplementary-material

References

Bell, C. I., Clarkson, D. T., and Cram, W. J. (1995). Partitioning and redistribution of sulphur during S-stress in Macroptilium atropurpureum cv. Siratro. J. Exp. Bot. 46, 73–81.

Google Scholar

Blair, G. J., and Till, A. R. (2003). Guidelines for the Use of Isotopes of Sulfur in Soil-plant Studies. Vienna: International Atomic Energy Agency (IAEA).

Google Scholar

Buchner, P., Takahashi, H., and Hawkesford, M. J. (2004). Plant sulphate transporters: co-ordination of uptake, intracellular and long-distance transport. J. Exp. Bot. 55, 1765–1773. doi: 10.1093/jxb/erh206

PubMed Abstract | CrossRef Full Text | Google Scholar

Cooper, H. D., and Clarkson, D. T. (1989). Cycling of amino-nitrogen and other nutrients between shoots and roots in cereals – a possible mechanism integrating shoot and root in the regulation of nutrient uptake. J. Exp. Bot. 40, 753–762. doi: 10.1093/jxb/40.7.753

PubMed Abstract | CrossRef Full Text | Google Scholar

Coplen, T. B., and Krouse, H. R. (1998). Sulphur isotope data consistency improved. Nature 392:32.

Google Scholar

De Laeter, J. R., Böhlke, J. K., De Bièvre, P., Hidaka, H., Peiser, H. S., Rosman, K. J. R., et al. (2003). Atomic weights of the elements: review 2000 (IUPAC technical report). Pure Appl. Chem. 75, 683–800.

Google Scholar

Epstein, E. (2000). “The discovery of the essential elements” in Discoveries in Plant Biology. eds S.-D. Kung and S.-F. Yang (Singapore: World Scientific Publishing). 1–16. doi: 10.1142/9789812813503_0001

CrossRef Full Text | Google Scholar

Fry, B. (2006). Stable Isotope Ecology. New York: Springer.

Google Scholar

Gigolashvili, T., and Kopriva, S. (2014). Transporters in plant sulfur metabolism. Front. Plant Sci. 5:442. doi: 10.3389/fpls.2014.00442

PubMed Abstract | CrossRef Full Text | Google Scholar

Godwin, R. M., Rae, A. L., Carrol, B. J., and Smith, F. W. (2003). Cloning and characterization of two genes encoding sulfate transporters from rice (Oryza sativa L.). Plant Soil 257, 113–123. doi: 10.1023/a:1026202709134

CrossRef Full Text | Google Scholar

Günal, S., Hardman, R., Kopriva, S., and Mueller, J. W. (2019). Sulfation pathways from red to green. J. Biol. Chem. 294, 12293–12312. doi: 10.1074/jbc.REV119.007422

PubMed Abstract | CrossRef Full Text | Google Scholar

Hua, L., Stevenson, S. R., Reyna-Llorens, I., Xiong, H., Kopriva, S., and Hibberd, J. M. (2021). The bundle sheath of rice is conditioned to play an active role in water transport as well as sulfur assimilation and jasmonic acid synthesis. Plant Cell 107, 268–286. doi: 10.1111/tpj.15292

PubMed Abstract | CrossRef Full Text | Google Scholar

Kemp, A. L. W., and Thode, H. G. (1968). The mechanism of the bacterial reduction of sulphate and of sulphite from isotope fractionation studies. Geochim. Cosmochim. Acta 32, 71–91.

Google Scholar

Kennedy, B. V., and Krouse, H. R. (1990). Isotope fractionation by plants and animals: implications for nutrition research. Can. J. Physiol. Pharmacol. 68, 960–972. doi: 10.1139/y90-146

PubMed Abstract | CrossRef Full Text | Google Scholar

Krouse, H. R., Stewart, J. W. B., and Grinenko, V. A. (1991). “Pedosphere and biosphere” in Stable Isotopes: Natural and Anthropogenic Sulfur in the Environment, SCOPE 43. eds H. R. Krouse and V. A. Grinenko (New York: John Wiley & Sons). 267–306.

Google Scholar

Kumar, S., Asif, M. A., Chakrabarty, D., Tripathi, R. D., and Trivedi, P. K. (2011). Differential expression and alternative splicing of rice sulphate transporter family members regulate sulphur status during plant growth, development and stress conditions. Funct. Integr. Genomics 11, 259–273. doi: 10.1007/s10142-010-0207-y

PubMed Abstract | CrossRef Full Text | Google Scholar

Larsson, C. M., Larsson, M., Purves, J. V., and Clarkson, D. T. (2006). Translocation and cycling through roots of recently absorbed nitrogen and sulfur in wheat (Triticum aestivum) during vegetative and generative growth. Physiol. Plant. 82, 345–352.

Google Scholar

Leustek, T., Martin, M. N., Bick, J. A., and Davies, J. P. (2000). Pathways and regulation of sulfur metabolism revealed through molecular and genetic studies. Annu. Rev. Plant. Physiol. Plant. Mol. Biol. 51, 141–165. doi: 10.1146/annurev.arplant.51.1.141

PubMed Abstract | CrossRef Full Text | Google Scholar

Maghrebi, M., Baldoni, E., Lucchini, G., Vigani, G., Valè, G., Sacchi, G. A., et al. (2021). Analyisis of cadmium root retention for two contrasting rice accessions suggests an important role for OsHMA2. Plants 10:806. doi: 10.3390/plants10040806

PubMed Abstract | CrossRef Full Text | Google Scholar

Maruyama-Nakashita, A., Inoue, E., Watanabe-Takahashi, A., Yamaya, T., and Takahashi, H. (2003). Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways. Plant Physiol. 132, 597–605. doi: 10.1104/pp.102.019802

PubMed Abstract | CrossRef Full Text | Google Scholar

Mekhtiyeva, V. L. (1971). Isotopic composition of sulfur of plants and animals from reservoirs of various salinity. Geokhimiya 6, 725–730.

Google Scholar

Rees, C. E. (1973). A steady-state model for sulphur isotope fractionation in bacterial reduction processes. Geochim. Cosmochim. Acta 37, 1141–1162. doi: 10.1016/0016-7037(73)90052-5

CrossRef Full Text | Google Scholar

Sacchi, G. A., and Nocito, F. F. (2019). Plant sulfate transporters in the low phytic acid network: some educated guesses. Plants 8:616. doi: 10.3390/plants8120616

PubMed Abstract | CrossRef Full Text | Google Scholar

Sachs, J. (1865). Handbuch der Experimental-Physiologie der Pflanzen. Leipzig: Wilhelm Engelmann.

Google Scholar

Saito, K. (2004). Sulfur assimilatory metabolism. The long and smelling road. Plant Physiol. 136, 2443–2450. doi: 10.1104/pp.104.046755

PubMed Abstract | CrossRef Full Text | Google Scholar

Tabatabai, M. A., and Bremner, J. M. (1970). A simple turbidimetric method of determining total sulfur in plant material. Agron. J. 62, 805–806.

Google Scholar

Takahashi, H. (2019). Sulfate transport systems in plants: functional diversity and molecular mechanisms underlying regulatory coordination. J. Exp. Bot. 70, 4075–4087. doi: 10.1093/jxb/erz132

PubMed Abstract | CrossRef Full Text | Google Scholar

Takahashi, H., Kopriva, S., Giordano, M., Saito, K., and Hell, R. (2011). Sulfur assimilation in photosynthetic organisms: molecular functions and regulations of transporters and assimilatory enzymes. Annu. Rev. Plant Biol. 62, 157–184. doi: 10.1146/annurev-arplant-042110-103921

PubMed Abstract | CrossRef Full Text | Google Scholar

Tcherkez, G., and Tea, I. (2013). 32S/34S isotope fractionation in plant sulphur metabolism. New Phytol. 200, 44–53. doi: 10.1111/nph.12314

CrossRef Full Text | Google Scholar

Thode, H. G., Macnamara, J., and Collins, C. B. (1949). Natural variations in the isotopic content of sulphur and their significance. Can. J. Res. 27, 361–373. doi: 10.1139/cjr49b-038

PubMed Abstract | CrossRef Full Text | Google Scholar

Trust, B. A., and Fry, B. (1992). Stable sulphur isotopes in plants: a review. Plant Cell Environ. 15, 1105–1110. doi: 10.1111/j.1365-3040.1992.tb01661.x

CrossRef Full Text | Google Scholar

Wilson, L. G., Bressan, R. A., and Filner, P. (1978). Light-dependent emission of hydrogen sulfide from plants. Plant Physiol. 61, 184–189. doi: 10.1104/pp.61.2.184

PubMed Abstract | CrossRef Full Text | Google Scholar

Winner, W. E., Smith, C. L., Koch, G. W., Mooney, H. A., Bewley, J. D., and Krouse, H. R. (1981). Rates of emission of H2S from plants and patterns of stable sulphur isotope fractionation. Nature 289, 672–673.

Google Scholar

Yoshimoto, N., Inoue, E., Saito, K., Yamaya, T., and Takahashi, H. (2003). Phloem-localizing sulfate transporter, Sultr1;3, mediates re-distribution of sulfur from source to sink organs in Arabidopsis. Plant Physiol. 131, 1511–1517. doi: 10.1104/pp.014712

PubMed Abstract | CrossRef Full Text | Google Scholar

Keywords: fractionation, Oryza sativa L., sulfate uptake, sulfur assimilation, sulfur stable isotopes

Citation: Cavallaro V, Maghrebi M, Caschetto M, Sacchi GA and Nocito FF (2022) Sulfur Stable Isotope Discrimination in Rice: A Sulfur Isotope Mass Balance Study. Front. Plant Sci. 13:837517. doi: 10.3389/fpls.2022.837517

Received: 16 December 2021; Accepted: 11 February 2022;
Published: 10 March 2022.

Edited by:

Marta Wilton Vasconcelos, Catholic University of Portugal, Portugal

Reviewed by:

Timothy O. Jobe, University of Cologne, Germany
Akiko Maruyama-Nakashita, Kyushu University, Japan

Copyright © 2022 Cavallaro, Maghrebi, Caschetto, Sacchi and Nocito. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Fabio Francesco Nocito, fabio.nocito@unimi.it

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.