Frontiers in Microbiology

Original Research

Published on 02 Sep 2025

Integrated microbiome-metabolome profiling unveils a predictive signature for early recurrence in hepatocellular carcinoma

in Microorganisms in Vertebrate Digestive Systems

Qiqi Chen
Yi Wang
Daoyuan Wu
He Zhang
Qingxin Xia
Dingding Qu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1653249

2,377 views
1 citation

Original Research

Published on 02 Sep 2025

Tobacco intercropping enhances soil fertility by improving synergic interactions between soil physicochemical and microbial properties

in Terrestrial Microbiology

Kaiyuan Gu
Xianglu Liu
Ming Liu
Xu Wei
Juan Li
Yanxia Hu
Yonglei Jiang
Yi Chen
Dexun Wang
Yanming Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1647493

2,804 views
3 citations

Original Research

Published on 02 Sep 2025

Rapid reshaping of the soil microbiome and metabolome during short-term flooding and draining in rice

in Terrestrial Microbiology

Yanyao Lu
Donghong Lai
Shuo Cai
Haiyuan Wang
Zejun Hu
Qiangqiang Xiong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1632744

2,392 views

Original Research

Published on 02 Sep 2025

Study of the cervical canal microbiome and microbiocenosis in reproductive-age women with squamous intraepithelial lesion

in Microbial Symbioses

Anastasiya Peremykina
Valery Cheranev
Alexey Y. Shilyaev
Andrey Krivoy
Zhanna Repinskaia
Dmitriy Korostin
Denis Rebrikov

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1630092

2,649 views

Original Research

Published on 02 Sep 2025

Babesia bovis infection alters the composition and assembly of Rhipicephalus microplus midgut microbiota

in Microbial Symbioses

Iván Corona-Guerrero
Apolline Maitre
Lianet Abuin-Denis
Rodrigo Morales-García
Consuelo Almazán
Dasiel Obregón
Alejandro Cabezas-Cruz
Juan Mosqueda

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1608409

2,604 views
1 citation

Correction

Published on 01 Sep 2025

Correction: Exploring the diversity and antimicrobial potential of actinomycetes isolated from different environments in Saudi Arabia: a systematic review

in Antimicrobials, Resistance and Chemotherapy

Noof Refat Helmi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1689464

1,256 views

Original Research

Published on 01 Sep 2025

Synergistic effects of beneficial microbial inoculants and SMS-amendments on improving soil properties and Pinus seedling growth in degraded soils

in Terrestrial Microbiology

Xuan Bo
Yong Liu
Hong Zhang
Chao Su
Yang Miao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1608689

2,694 views

Original Research

Published on 01 Sep 2025

Defined domains and cleavage determine the diverse functions of piscine myocarditis virus p33 protein

in Virology

Racheal Amono
Snøa A. T. N. Fredlund
Morgane Chesnais
Bernd Thiede
Turhan Markussen
Øystein Evensen
Aase B. Mikalsen

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1633241

2,564 views
1 citation

Original Research

Published on 01 Sep 2025

First report of tuberculosis in a cat from Italy caused by Mycobacterium africanum, lineage 6: genomic characterization and phylogenetic analysis

in Infectious Agents and Disease

Patricia Alba
Andrea Caprioli
Cristiano Cocumelli
Claudia Eleni
Valentina Galietta
Angelo Giacomi
Luigi Sorbara
Fiorentino Stravino
Fabiola Feltrin
Roberta Amoruso

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1633110

2,340 views

Original Research

Published on 01 Sep 2025

Analysis of the community composition and diversity of endophytes in extremely spicy industrial chili peppers from Tibet using high-throughput sequencing

in Microbe and Virus Interactions with Plants

Junze Zhang
Yebing Yin
Yanying Wang
Sicen Luo
Yu Li
Wenxiang Zhao
Pengxi Cao
Yixuan Liu
Hongmei Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1630090

2,158 views
1 citation

Original Research

Published on 01 Sep 2025

TIE-UP-SIN: a novel method for enhanced identification of protein–protein interactions

in Systems Microbiology

Maximilian Schedlowski
Stephan Michalik
Tilly Hoffmüller
Marco Harms
Leif Steil
Kristin Surmann
Christian Hentschker
Manuela Gesell Salazar
Uwe Völker
Alexander Reder

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1657647

2,942 views

Original Research

Published on 01 Sep 2025

Impairment in global protein synthesis uncouples UPR gene induction from HAC1 mRNA splicing in Saccharomyces cerevisiae

in Microbial Physiology and Metabolism

Ralph Allen Capistrano Geronimo
Yuki Ishiwata-Kimata
Yutaka Funahashi
Shingo Izawa
Yukio Kimata

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1629132

2,738 views
1 citation

Original Research

Published on 01 Sep 2025

The joint action of antibiotics, bacteriophage, and the innate immune response in the treatment of bacterial infections

in Antimicrobials, Resistance and Chemotherapy

Brandon A. Berryhill
Teresa Gil-Gil
Bruce R. Levin

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1632267

2,006 views

Original Research

Published on 01 Sep 2025

Integrative network pharmacology, metabolomics and gut flora studies reveal mechanisms of action of Rhododendron molle (Blume) G. Don to ameliorate liver injury

in Microorganisms in Vertebrate Digestive Systems

Xiaolei Jiang
Yafeng Zhuang
Tiancheng Meng
Tianwei Meng
Xinghua Li
Dan He
Hongyu Meng
Hong Chang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1570229

2,950 views

Original Research

Published on 01 Sep 2025

Latitude- and depth-driven divergence in protist trophic strategies revealed by a machine learning model

in Aquatic Microbiology

Elaina Thomas
Mora J. Groussman
Sacha N. Coesel
Nicholas J. Hawco
Randelle M. Bundy
E. Virginia Armbrust

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1602162

3,053 views
1 citation

Original Research

Published on 01 Sep 2025

Exploring the phylogenetic diversity and antimicrobial activity of non-aureus staphylococci and mammaliicocci isolated from teat apices of organic dairy cows

in Systems Microbiology

F. Peña-Mosca
T. N. Gaire
C. Dean
P. Ferm
D. Manriquez
P. Pinedo
N. Noyes
L. Caixeta

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1614488

2,345 views
1 citation

Systematic Review

Published on 01 Sep 2025

Changes in intestinal microbiota in patients with pancreatic cancer: a systematic review and meta-analysis

in Microorganisms in Vertebrate Digestive Systems

Meng Liang
Zheng Liu
Rui Zhang
Ji-Hong Yang
Xiao-Wei Wang
Nan Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1619323

2,547 views

Correction

Published on 01 Sep 2025

Correction: Evaluation of protein extraction methodologies on bacterial proteomic profiling: a comparative analysis

in Microbial Physiology and Metabolism

Hongning Jiang
Aiyun Han
Yangdong Zhang
Yanxin Li
Chao Jiang
Qijing Du
Rongbo Fan
Yongxin Yang
Rongwei Han

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1673697

1,552 views

Original Research

Published on 29 Aug 2025

The differential gut microbiota and their MetaCyc pathways in IBRV infected Angus calves

in Microorganisms in Vertebrate Digestive Systems

Pengfei Yi
Tianqing Li
Lianping Xu
Xin Li
Haiyan Wang
Yingcai Ma
Yunxiao Ma
Yawei Sun
Na Li
Qi Zhong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1588341

2,078 views

Original Research

Published on 29 Aug 2025

Response of soil microbial community diversity and structure to soybean-based intercropping and its effects on yield

in Terrestrial Microbiology

Xinyi Zhan
Yongwei Shu
Liu Guo
Xinyue Liu
Quan Zhao
Yuze Li
Taiwen Yong
Wenyu Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1658783

2,868 views
1 citation

Original Research

Published on 29 Aug 2025

Hydrodynamic flow and benthic boundary layer interactions shape the microbial community in Milos shallow water hydrothermal vents

in Extreme Microbiology

Ana Clara Pelliciari Silva
Flavia Migliaccio
Bernardo Barosa
Luigi Gallucci
Mustafa Yücel
Dionysis Foustoukos
Nadine Le Bris
Stuart J. Bartlett
Valerio D’Alessandro
Costantino Vetriani

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1649514

3,607 views
1 citation

Original Research

Published on 29 Aug 2025

Reshaping of soil properties and microbial community by the conversion from non-grain cultivated land to paddy field

in Terrestrial Microbiology

Xuqing Li
Han Chen
Xiao Wang
Qurban Ali
Luqiong Lv
Tiefeng Zhou
Munazza Ijaz
Temoor Ahmed
Jianli Yan
Bin Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1643144

1,725 views

Original Research

Published on 29 Aug 2025

Combined transcriptome and metabolome analysis reveals the regulatory network of histidine kinase QseC in the two-component system of Glaesserella parasuis

in Microbial Physiology and Metabolism

Xuefeng Yan
Yuhong Zhou
Songwei Liu
Congwei Gu
Wudian Xiao
Mingde Zhao
Zehui Yu
Lvqin He

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1637383

1,735 views
1 citation

Original Research

Published on 29 Aug 2025

Broad antibiosis activity of Bacillus velezensis and Bacillus subtilis is accounted for by a conserved capacity for lipopeptide biosynthesis

in Microbe and Virus Interactions with Plants

Jahangir Alam
Oluwakemisola E. Olofintila
Francesco S. Moen
Zachary A. Noel
Mark R. Liles
Douglas C. Goodwin

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1636481

4,175 views
2 citations

39,488 articles

articles

Integrated microbiome-metabolome profiling unveils a predictive signature for early recurrence in hepatocellular carcinoma

Tobacco intercropping enhances soil fertility by improving synergic interactions between soil physicochemical and microbial properties

Rapid reshaping of the soil microbiome and metabolome during short-term flooding and draining in rice

Study of the cervical canal microbiome and microbiocenosis in reproductive-age women with squamous intraepithelial lesion

Babesia bovis infection alters the composition and assembly of Rhipicephalus microplus midgut microbiota

Correction: Exploring the diversity and antimicrobial potential of actinomycetes isolated from different environments in Saudi Arabia: a systematic review

Synergistic effects of beneficial microbial inoculants and SMS-amendments on improving soil properties and Pinus seedling growth in degraded soils

Defined domains and cleavage determine the diverse functions of piscine myocarditis virus p33 protein

First report of tuberculosis in a cat from Italy caused by Mycobacterium africanum, lineage 6: genomic characterization and phylogenetic analysis

Analysis of the community composition and diversity of endophytes in extremely spicy industrial chili peppers from Tibet using high-throughput sequencing

TIE-UP-SIN: a novel method for enhanced identification of protein–protein interactions

Impairment in global protein synthesis uncouples UPR gene induction from HAC1 mRNA splicing in Saccharomyces cerevisiae

The joint action of antibiotics, bacteriophage, and the innate immune response in the treatment of bacterial infections

Integrative network pharmacology, metabolomics and gut flora studies reveal mechanisms of action of Rhododendron molle (Blume) G. Don to ameliorate liver injury

Latitude- and depth-driven divergence in protist trophic strategies revealed by a machine learning model

Exploring the phylogenetic diversity and antimicrobial activity of non-aureus staphylococci and mammaliicocci isolated from teat apices of organic dairy cows

Changes in intestinal microbiota in patients with pancreatic cancer: a systematic review and meta-analysis

Correction: Evaluation of protein extraction methodologies on bacterial proteomic profiling: a comparative analysis

The differential gut microbiota and their MetaCyc pathways in IBRV infected Angus calves

Response of soil microbial community diversity and structure to soybean-based intercropping and its effects on yield

Hydrodynamic flow and benthic boundary layer interactions shape the microbial community in Milos shallow water hydrothermal vents

Reshaping of soil properties and microbial community by the conversion from non-grain cultivated land to paddy field

Combined transcriptome and metabolome analysis reveals the regulatory network of histidine kinase QseC in the two-component system of Glaesserella parasuis

Broad antibiosis activity of Bacillus velezensis and Bacillus subtilis is accounted for by a conserved capacity for lipopeptide biosynthesis