Abstract
CP12 is a small, redox-sensitive protein, representatives of which are found in most photosynthetic organisms, including cyanobacteria, diatoms, red and green algae, and higher plants. The only clearly defined function for CP12 in any organism is in the thioredoxin-mediated regulation of the Calvin–Benson cycle. CP12 mediates the formation of a complex between glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) in response to changes in light intensity. Under low light, the formation of the GAPDH/PRK/CP12 complex results in a reduction in the activity of both PRK and GAPDH and, under high light conditions, thioredoxin mediates the disassociation of the complex resulting in an increase in both GAPDH and PRK activity. Although the role of CP12 in the redox-mediated formation of the GAPDH/PRK/CP12 multiprotein complex has been clearly demonstrated, a number of studies now provide evidence that the CP12 proteins may play a wider role. In Arabidopsis thaliana CP12 is expressed in a range of tissue including roots, flowers, and seeds and antisense suppression of tobacco CP12 disrupts metabolism and impacts on growth and development. Furthermore, in addition to the higher plant genomes which encode up to three forms of CP12, analysis of cyanobacterial genomes has revealed that, not only are there multiple forms of the CP12 protein, but that in these organisms CP12 is also found fused to cystathionine-β-synthase domain containing proteins. In this review we present the latest information on the CP12 protein family and explore the possibility that CP12 proteins form part of a redox-mediated metabolic switch, allowing organisms to respond to rapid changes in the external environment.
INTRODUCTION
Redox-mediated modulation of enzyme activity is an important post-translational mechanism involved in the regulation of cellular processes, enabling organisms to respond to changes in metabolic demands and environmental conditions. A group of well known redox-sensitive proteins, thioredoxins, play a major role in the regulation of cellular processes in plants, algae and cyanobacteria (Meyer et al., 2009; ). The mode of action of thioredoxin-mediated regulation is through the post-translational modification of cysteine residues on target proteins, bringing about the conversion of a disulphide bridge in the oxidized state, to a thiol group when reduced. In higher plants two thioredoxins (Trx f and Trx m) were first identified in the 1970s as activators of enzymes involved in photosynthetic carbon assimilation in the chloroplast (; ). The Calvin–Benson cycle is directly dependent on the energy adenosine triphosphate (ATP) and reducing power nicotinamide adenine dinucleotide phosphate (NADPH) derived from photosynthetic electron transport to drive the enzymatic reactions. In addition, reducing equivalents from electron transport are used to reduce thioredoxin via ferredoxin thioredoxin reductase. Trx f activates the Calvin–Benson cycle enzymes phosphoribulokinase (PRK), NADP-glyceraldehyde-3-phosphate dehydrogenase (GAPDH), fructose 1, 6-bisphosphatase (FBPase) and sedoheptulose 1, 7-bisphosphatase (SBPase) (Figure 4). Light intensity in the natural environment is variable and Trx redox state links the activity of these enzymes to the supply of ATP and NADPH in response to variations in light intensity. However, when temperature or light levels fall, the responses of thioredoxin-modulated enzymes in leaf tissues are not uniform. Under such conditions the activities of FBPase and SBPase can temporarily limit photosynthesis (Sassenrath-Cole et al., 1994; ) however, for PRK and GAPDH no such limitation has been reported and activation is rapid.
A second redox-mediated mechanism that regulates the activity of the Calvin–Benson cycle involves the aggregation of the enzymes PRK and GAPDH into a multiprotein complex which has been shown to be mediated by a small, nuclear-encoded chloroplast protein, CP12. This PRK/GAPDH/CP12 protein complex has been shown to be present in several higher plant (Wedel et al., 1997; Wedel and Soll, 1998; Scheibe et al., 2002; ) and algal species (; ; Oesterhelt et al., 2007). The existence of this PRK/GAPDH/CP12 regulatory complex is well established (; Wedel et al., 1997; Scheibe et al., 2002; Marri et al., 2005b, 2009; ) and when bound in this complex, the activity of the enzymes PRK and GAPDH are decreased. Initially, evidence suggested that the association and dissociation of the PRK/GAPDH/CP12 complex is mediated via changes in NADP(H)/NAD(H) ratios within the chloroplast (Wedel et al., 1997; Wedel and Soll, 1998; Tamoi et al., 2005; Trost et al., 2006). However, more recently it has been shown that the status of the PRK/GAPDH/CP12 complex is regulated by changes in the redox state of Trx (; Marri et al., 2009). In vitro, both chloroplastic Trx f and m have been shown to mediate the breakdown of the PRK/GAPDH/CP12 complex, via reduction of the two cysteine pairs on the CP12 protein (Marri et al., 2009). These studies provide evidence of a link between the redox state of Trx and that of CP12 in the formation and breakdown of the PRK/GAPDH/CP12 complex. When high levels of reduced Trx are available, CP12 will be maintained in a reduced state and little or no formation of the PRK/GAPDH/CP12 complex will occur. Conversely when levels of reduced Trx declines, levels of oxidized CP12 will increase resulting in the formation of the PRK/GAPDH/CP12 complex (Figure 4).
An important feature of the PRK/GAPDH/CP12 complex in vivo is the observation that dissociation and formation of the complex in pea leaves is rapid and that it responds to light intensity (). In high light, dissociation occurred in under 1 min and on transfer to low light re-association was evident within 1 min; furthermore following 5 min in total darkness all of the PRK was found to be associated in the complex. A further important physiological observation is that although PRK contained within the complex is inactive it is found in both the reduced or oxidized state (; ). The implication of this is that the PRK/GAPDH/CP12 complex provides a mechanism for sequestering and rapidly deactivating PRK and GAPDH in response to reduced light intensity. Conversely when light levels increase PRK and GAPDH are released and the reduced forms do not require Trx-activation and are instantly functional. This may provide an explanation for the rapid increase in PRK activity in response to an increase in light intensity, which is at least one order of magnitude quicker than the rate of Trx-mediated reductive activation of the oxidized form of this enzyme (). The physiological significance of the PRK/GAPDH/CP12 complex is that it provides a rapid response mechanism to regulate the rate of carbon fixation in the Calvin–Benson cycle, in response to changes in the availability of light to produce NADPH and ATP.
Despite a considerable body of data on the role of CP12 in the context of the regulation of PRK and GAPDH, some questions remain to be addressed in terms of the relative importance of this complex in regulating carbon metabolism and the possibility of a wider role for CP12 in redox regulation of metabolism. Firstly, it is still debatable whether the PRK/GAPDH/CP12 complex is a universal regulatory mechanism. Recent evidence has shown that the CP12 mediated regulation of PRK and GAPDH varies between different algal species (Maberly et al., 2010) and that there is heterogeneity in the PRK and GAPDH protein complex in higher plant species (). Furthermore, in vitro studies indicated that only fully oxidized Arabidopsis PRK is incorporated into the complex (Marri et al., 2005b) unlike the findings for the complex isolated from pea and Chlamydomonas (; ). The importance of both CP12 and protein aggregation in the regulation of the Calvin–Benson cycle may therefore vary between species.
Four additional pieces of information raise further questions about the role of CP12. (1) In higher plants the CP12 proteins are encoded by a small gene family with different patterns of expression (Marri et al., 2005a; Singh et al., 2008). (2) Antisense suppression of CP12 in tobacco plants which resulted in a complex phenotype is not consistent with a loss of regulation of the Calvin–Benson cycle (,). (3) Recent analysis of genome data from 126 species of cyanobacteria has revealed a wide diversity of CP12 protein sequences raising questions about the role of these different CP12 and CP12-like proteins (Stanley et al., 2013). (4) CP12 is a member of a class of proteins known as intrinsically unstructured proteins (IUPs; ; ; Mileo et al., 2013). This article presents brings together information from a number of recent studies that suggest that CP12 may have a broader role in the regulation of metabolism, over and above the well established role of CP12 in the regulation of the Calvin–Benson cycle.
CP12 DISTRIBUTION AND STRUCTURE
Until recently the distribution of the CP12 proteins had been found exclusively within photosynthetic organisms and at least one CP12-like protein has been identified in all photosynthetic autotrophs including cyanobacteria, with the exception of the prasinophyte Osterococcus (Wedel et al., 1997; Wedel and Soll, 1998; ; Marri et al., 2005a; Tamoi et al., 2005; Oesterhelt et al., 2007; Robbens et al., 2007; ; Stanley et al., 2013). More recently, it has been shown that proteins containing sequences with a high degree of similarity to the carboxy terminal region of CP12 have been identified in cyanophages (Figure 1).
FIGURE 1
In the Arabidopsis genome three genes have been identified and named CP12-1 (At2g47400), CP12-2 (At3g62410), and CP12-3 (At1g76560). CP12-1 and CP12-2 are highly homologous and share 86% identity rising to 98% following cleavage of the transit peptide (Figure 1). Comparisons between these proteins in a variety of species have been unable to differentiate CP12-1 and CP12-2 into two separate sub-groups on the basis of their amino acid sequence (Singh et al., 2008; ). CP12-3 shares 41% and 48% identity with CP12-1 and CP12-2 respectively and phylogenetic analysis places CP12-3 in a distinct clade. In all angiosperm species for which a full genome sequence is available, e.g., rice, maize and poplar, three CP12 encoding genes have been found with two being highly similar and a third being distinct, similar to the pattern in Arabidopsis. In contrast, in the green algae Chlamydomonas reinhardtii only one “canonical CP12” coding gene has been identified (; ). In Gymnosperms, similar to C. reinhardtii, only one type of CP12 protein has been identified and this has more similarity to the CP12-3-like type. Furthermore, evidence to date suggests that the CP12-1/CP12-2-like forms are not present in this group of plants ().
CP12 proteins in the green lineage have a highly conserved primary structure with three key features: an N-terminal cysteine pair, a C-terminal cysteine pair and a core “AWD_VEE” sequence (Figures 1 and 2). The N- and C-terminal cysteine pairs have been shown to form two intramolecular disulfide bridges when oxidized which are converted to thiol groups when reduced by Trx. Early studies provided evidence that both the N- and C-terminal disulfide bridges are necessary for the formation of the GAPDH/CP12/PRK complex (Wedel and Soll, 1998; ). Although in the higher plants all CP12 proteins studied so far share all three of these features, there are exceptions to this in the red algae, haptophytes, cyanobacteria, and cyanophages (Figure 1; ; Thompson et al., 2011; Stanley et al., 2013). An unexpected diversity in the primary structure of CP12-like proteins was found to be present in cyanobacterial species. These have been classified into eight different groups based on the presence or absence of the three conserved features of classical CP12 proteins, i.e., the N- and C- terminal cysteine pairs and the central highly conserved “AWD_VEE” motif (Stanley et al., 2013). In addition, three of the cyanobacterial CP12-like protein classes described have a N-terminal cystathionine-β-synthase (CBS) domain (Stanley et al., 2013). No individual species of cyanobacteria has all eight of the different classes of CP12-like proteins, but with the exception of the marine picoplanktonic group, all other groups have at least one copy of the classical CP12 (CP12 C–N) form.
FIGURE 2
Structural and in silico studies have demonstrated that CP12 has physicochemical properties similar to those of IUPs (
Bioinformatic analysis of CP12 proteins sequences has revealed some structural similarity with copper chaperones from Arabidopsis which have been shown to play different roles in copper homoeostasis (
CP12 GENE EXPRESSION
The three CP12 genes present in Arabidopsis are differentially expressed (Marri et al., 2005b; Singh et al., 2008). The expression of CP12-2, like GAPDH and PRK, is light dependent and is highest in photosynthetic tissues such as cotyledons, vegetative leaves and stalks. CP12-1 transcripts are evident in dark-grown tissue and whilst it is abundantly expressed in photosynthetic tissues, it is also expressed in a range of tissues including flowers (siliques, styles, and sepals), seeds and root tips. In contrast CP12-3 has very low expression in leaf tissue but accumulates in roots, stigma and anthers (Singh et al., 2008). Hypoxic conditions increase expression of CP12-3 in the leaves while inhibiting the expression of CP12-2. Other environmental signals that affect the expression of the CP12 genes include low temperature, which decreases expression of CP12-2 (CP12-1 and CP12-3 are insensitive to this treatment).
In addition to the interesting results shown by the in-vivo expression studies, in silico co-expression analysis of the Arabidopsis gene family using the Arabidopsis thaliana trans-factor and cis-element prediction database, ATTED-II (http://atted.jp, Obayashi et al., 2011) has shown that the three CP12 genes have very distinct co-expression patterns and also correlate with expression of genes outside the Calvin–Benson cycle (Figure 3). Although this database is subject to updates which result in differences in the networks produced, the results from this bioinformatics package have consistently shown these tendencies. The co-expression network of CP12-1 includes GAPA-1 (a gene encoding the A subunit of GAPDH) and genes encoding the photosynthetic electron transport proteins. Interestingly, expression of CP12-2 did not correlate with any of the genes encoding Calvin–Benson cycle enzymes, including GAPDH and PRK, but instead the co-expression network included the genes encoding subunits of the thylakoid membrane located NADH-dehydrogenase complex. The CP12-3 gene shared expression patterns with genes encoding enzymes in phenylpropanoid biosynthesis, carbohydrate metabolism, regulatory kinases and transcription factors; but has failed to show co-expression with genes encoding the photosynthetic electron transport proteins or Calvin–Benson cycle components. The meaning and importance of these co-expression patterns is not yet clear and experimental approaches will be needed to understand the specific implications of these connections. Nevertheless, the differences in the co-expression patterns of the three plant CP12 genes raise questions about the role of the different CP12 isoforms and about the influence of CP12 regulation in wider metabolism.
FIGURE 3

Co-expression analysis of the CP12 gene family using the Arabidopsis thaliana trans-factor and cis-element prediction database, ATTED-II (produced 15/11/2013). Co-expressed gene network around (A) CP12-1 (http://atted.jp/data/locus/819353.shtml). (B) CP12-2 (http://atted.jp/data/locus/825414.shtml) and (C) CP12-3 (http://atted.jp/data/locus/843989.shtml). Colored marks accompanying some genes represent their involvement in: (A) Red: Photosynthesis, Yellow: Antenna proteins and Green: Carbon fixation in photosynthetic organisms. (B) Red: Biosynthesis of secondary metabolites and Yellow: Carbon fixation in photosynthetic organisms.
CP12 IN VIVO FUNCTION
To date two studies have reported on the effects of reduced levels of CP12 protein in vivo. One using the cyanobacterial knock out mutant of Synechococcus PCC7942 (Tamoi et al., 2005) and the other tobacco antisense CP12 plants (
The situation in higher plants is likely to be different to that found in cyanobacteria. In higher plants not only are some Calvin–Benson cycle enzymes reductively activated in the light, but Trx f also reduces plastidic glucose 6-phosphate dehydrogenase (G6PDH), the first enzyme of the OPPP, which results in the inactivation of G6PDH (Wenderoth et al., 1997;
CP12-LIKE FUSION PROTEINS
In C. reinhardtii the GAPDH holoenzyme is a homotetramer made up of A-type subunits and it has been shown that CP12 binding to this form of GAPDH confers redox regulation, mediated directly by Trx (
A CBS-TRX-CP12 REDOX NETWORK?
The discovery of eight different classes of CP12 in cyanobacteria, some of which are fused to a CBS domain containing protein, raises interesting questions about the role of these fusion proteins in the regulation of metabolism. Evidence from in silico modeling studies indicates that the CBS-CP12 fusion proteins are unable to interact with GAPDH and therefore an alternative role for these proteins has to be considered (Stanley et al., 2013). In higher plants, although a large family of CBS domain type proteins has been identified, none have been found fused to a CP12-like domain (
FIGURE 4

A schematic showing the relationship between CBS domain containing proteins, thioredoxin and CP12 regulation of the Calvin cycle. The reducing equivalents from the electron transport chain reduce the disulphide bridges on thioredoxin to thiol groups. Reduced Trx then reductively activates enzymes of the Calvin–Benson cycle, PRK, GAPDH, SBPase, FBPase and the enzyme MDH. The redox state of CP12 is also determined by Trx, when light levels are high Trx is maintained in a reduced state and under these conditions CP12 is reduced. When light levels drop, Trx becomes oxidized and the levels of CP12 in the oxidized state also increase resulting in the formation of the PRK/GAPDH/CP12 complex and inactivation of PRK and GAPDH. Under oxidative stress dimerization of the plastid CBSX1 protein occurs, which increases the levels of reduced Trx, thereby maintaining CP12 in the reduced state. The green arrows indicate the Trx mediated activation of the enzymes GAPDH, PRK, SBPase, FBPase, and MDH and the red bars indicate deactivation of PRK and GAPDH by CP12 mediated formation of the complex or of G6PDH by reduced Trx. Dotted lines indicate hypothetical interactions between CBSX1 and CP12red and CP12ox and MDH.
CONCLUSION
As yet no experimental evidence for a role for the CP12 proteins outside of the Calvin–Benson cycle has been shown nor has a unique function been assigned to the different forms of CP12 in any organism. However, evidence from a number of different sources is accumulating to suggest that the CP12-like proteins may act in combination with other regulatory proteins, e.g., Trx’s and CBS domain containing proteins to modulate metabolism in response to changes in metabolic demand and environment, mediated by changes in the redox state. This raises the possibility that CP12 acts to switch on and off metabolic pathways in response to changes in redox status in the chloroplast network.
Statements
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
protein–protein interactions, redox, cystathionine-β-synthase (CBS)-domains, thioredoxin, intrinsically unstructured (disordered) protein
Citation
López-Calcagno PE, Howard TP and Raines CA (2014) The CP12 protein family: a thioredoxin-mediated metabolic switch?. Front. Plant Sci. 5:9. doi: 10.3389/fpls.2014.00009
Received
27 August 2013
Accepted
07 January 2014
Published
30 January 2014
Volume
5 - 2014
Edited by
Jose A. Traverso, Consejo Superior de Investigaciones Cientïficas, Spain
Reviewed by
Renate Scheibe, University of Osnabrueck, Germany; Mariam Sahrawy Barragan, Consejo Superior de Investigaciones Cientïficas, Spain; Paolo Trost, University of Bologna, Italy
Copyright
© 2014 López-Calcagno, Howard and Raines.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Christine A. Raines, School of Biological Sciences, University of Essex, Colchester, Essex CO3 4JE, UK e-mail: rainc@essex.ac.uk
This article was submitted to Plant Physiology, a section of the journal Frontiers in Plant Science.
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