Abstract
Significant advances have been made in our understanding of the regulation of cold hardiness. The existence of numerous biophysical and biochemical adaptive mechanisms in perennial woody plants and the complexity their regulation has made the development of methods for managing and improving cold hardiness in perennial woody plants has been very difficult. This may be partially attributed to viewing cold hardiness as a single dimensional response, rather than as a complex phenomenon, involving different mechanisms (avoidance and tolerance), different stages (mid-winter vs. late winter), and having an intimate overlap with the genetic regulation of dormancy. In particular separating the molecular regulation of cold hardiness from growth processes has been challenging. ICE and C-repeat binding factor (CBF), transcription factors (Inducer of CBF expression and CRT-binding factor) have been shown to be an important aspect in the regulation of cold-induced gene expression. Evidence has emerged, however, that they are also intimately involved in the regulation of growth, flowering, dormancy, and stomatal development. This evidence includes the presence of CBF binding motifs in genes regulating these processes, or through cross-talk between the pathways that regulate them. Recent changes in climate that have resulted in erratic episodes of unseasonal warming followed by more seasonal patterns of low temperatures has also highlighted the need to better understand the genetic and molecular regulation of deacclimation, a topic of research that is only more recently being addressed. Environmentally-induced epigenetic regulation of stress responses and seasonal processes such as cold acclimation, deacclimation, and dormancy have been documented but are still poorly understood. Advances in the ability to efficiently generate large DNA and RNA datasets and genetic transformation technologies have greatly increased our ability to explore the regulation of gene expression and explore genetic diversity. Greater knowledge of the interplay between epigenetic and genetic regulation of cold hardiness, along with the application of advanced genetic analyses, such as genome-wide-association-studies (GWAS), are needed to develop strategies for addressing the complex processes associated with cold hardiness in woody plants. A cautionary note is also indicated regarding the time-scale needed to examine and interpret plant response to freezing temperatures if progress is to be made in developing effective approaches for manipulating and improving cold hardiness.
Introduction
Ever since the first microscopic observations of the freezing response of cells were made in the latter part of the 19th century and early 20th century (; ), and it was discovered that plant cells undergo cytorrhysis rather than plasmolysis in response to freezing, an elusive search has been conducted to develop a complete and integrated understanding of cold hardiness and freezing tolerance in plants (; ; ). Despite thousands of reports and countless reviews, reliable approaches to improving freezing tolerance, without affecting other aspects of plant development, have yet to be developed, either at the molecular/genetic level or the physiological level. New technologies have allowed us to understand plant response to low temperatures in greater and greater detail, but the picture has greatly increased in complexity.
The lack of progress may be partially attributable to two factors. One factor is interpreting cold hardiness as a singular on/off response rather than a combination of many diverse mechanisms that involve significant structural, biochemical, and genetic adjustments, as well as the complexity of manipulating cold hardiness without having a negative impact on other plant developmental processes. The characteristics of these components are species-specific (often genotype-specific), potentially under separate genetic control. Therefore, it is essential when investigating plant cold hardiness to be cognizant of what aspect of the process is being studied and its potential impact on the aspect of cold hardiness that is deemed to be critical for survival. The second factor, is related to the difficulty of studying the biology of organisms at low temperatures, where the kinetics of reactions, and the time required for processes to reach an equilibrium can be problematic when conducting experiments. As noted in , the admonition made by Felix Franks in his book on the biophysics of water at low temperature (), is very relevant. “Too frequently experimental observations on highly complex systems are based on measurements performed under non-equilibrium conditions and rationalized in terms of elementary textbook science. The degree of undercooling (mostly presented using the incorrect terminology, supercooling), the mechanism of ice nucleation, the growth and type of crystals, their size and distribution, the flow properties of the unfrozen matrix, and long-term effects of aging, all need to be taken into account.” The book published by still serves as an invaluable primer on the low temperature biology.
Cold hardiness adaptations in plants have been divided into two general categories, tolerance and avoidance. The former involves transcriptomic reprogramming and a host of subsequent biochemical changes that allow plants to tolerate freezing temperatures and the presence of ice in their tissues, while the latter involves mechanisms that allows pockets of water to remain undercooled (deep supercooling) to very low, sub-zero temperatures (-20 to -40°C), so that the supercooled cells are not exposed to the dehydrative effects associated with a freeze tolerance response (often referred to as extracellular freezing). Deep supercooling is characteristic of the dormant buds of many woody perennials and the xylem parenchyma cells of many temperate tree species. The terms freeze tolerance and avoidance, however, are somewhat inaccurate, though widely used, as in both cases cells are avoiding freezing. In the case of freezing tolerance, this is accomplished by the loss of cellular water to extracellular ice, which then decreases the freezing point of the cytoplasm. In the second case, water is not relocated to sites of extracellular ice, even though extracellular ice is present, but instead remains in a metastable condition, and prone to “flash” intracellular freezing (; ). Processes relevant to these strategies are ice nucleation and propagation (, ), the ability to specifically determine where ice crystals are initiated in plant tissues and what shape they form as they grow (), and the formation of cryoprotective and antifreeze compounds ().
Despite the complexity of plant cold hardiness, considerable progress has been made in understanding the various components that comprise cold hardiness (). This mini-review highlights one area where considerable progress has been made in understanding the genetic regulation of cold acclimation, and another topic, deacclimation, that is deserving of considerable more focus due to the erratic patterns of warming and cooling temperatures that have developed in the context of climate change. These highly variable weather patterns have had a major impact on dormancy, cold acclimation, and chilling requirements.
The Molecular Regulation of Plant Cold Hardiness
Plants cannot move but rather must adapt to a stressful environment. Genes encoding transcription factors in the model plant Arabidopsis constitute 6–10% of their genome, compared to 5% in humans, and it is therefore not surprising that adaptation to stresses in plants includes a dramatic change in transcriptional cascades (). The C-repeat binding factor (CBF), transcription factor pathway has been demonstrated to play an exceptionally important role in plant cold acclimation, a process in which low temperatures lead to biochemical and physiological changes that confer freezing tolerance. These changes are largely associated with the expression of so-called Cold Responsive (COR) genes. In Arabidopsis, two or three CBFs co-regulate, often with other transcription factors, more than two-thirds of COR genes (). The increase in frost tolerance under ambient conditions that has been demonstrated to occur in many plants as a result of CBF overexpression, and the decrease in frost tolerance in CBF triple mutants (; ), further underscores the importance of CBF genes. CBF overexpression in herbaceous and tree species, however, can also reduce growth and induce dormancy (, ), thus it is not surprising that CBF activity is tightly regulated and exhibits only short periods of elevated presence in an active form. This regulation occurs at various levels, including transcriptional (transcript quantity and variant), translational (protein quantity), and post-translational (protein activity), and can have an immediate effect, because many changes are made to pre-existing molecules. Detailed insights into the regulation of the CBF pathway in Arabidopsis has only recently been emerging (Figure 1), while limited information for other plant species suggests they have similar but unique regulatory processes of their own. An overview of the information on Arabidopsis, and woody plants when available, is presented in the current mini-review.
FIGURE 1
Low temperature-induced chromatin modification provides physical access to certain genes and allows their transcription. This apparently includes access to and activation of COR genes by CBFs (
In addition to transcript levels, the type of transcripts can also be altered in response to a cold period. Approximately 60% of intron-containing genes in Arabidopsis were reported to undergo alternative splicing (
Once produced, the stability of CBF1/3 proteins is downregulated by their interaction with cold-induced CRPK1-phosphorylated 14-3-3 protein (
The presence of a similar pathway in perennial woody plants, such as poplar, apple, grape, Prunus sp., and eucalyptus, is suggested by the identification of usually a larger number of ICE- and CBF-like genes, increasing the possible further delineation of functions (
Prospects for the Generation of Plants with Enhanced Freezing Tolerance
The tight regulation of CBF activity is largely lost in transgenic plants using a CBF construct driven by a constitutive 35S promoter, thus the use of natural promoters is preferred. Recent reports suggest that plants with constitutive brassinosteroid (BR) response display higher CBF expression but no signs of growth retardation (
An alternative, enterprising approach is the modification of endogenous CBF genes into variants that lead to a higher frost tolerance using a clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated protein 9 nuclease (Cas9)-like system which has recently been optimized for use in vegetatively propagated perennial plants (
Deacclimation (DA) Response, a Critical Factor for Winter-Survival
The ability to increase freeze-tolerance in temperate- and boreal-zone woody perennials (fruit and forest tree species) via autumnal cold acclimation is undoubtedly the first line of defense against harsh and long winters. Seasonally induced freeze-tolerance is lost under relatively warmer conditions in a process called ‘deacclimation’, a process that typically occurs in response to spring-warming. The maintenance of a sufficient level of cold-induced freeze-tolerance until the danger of killing frosts is passed, however, is an imperative to avoid frost-damage. For example, erratic temperature fluctuations, i.e., sudden winter-warming or premature spring-like conditions followed by more “normal” freezing temperatures, could render partially or fully deacclimated tissues vulnerable to freeze-damage. Indeed, the frequency of such fluctuations has been increasing (
Dormancy Status and Spring Phenology (Budbreak) in Relation to DA
Temperate trees have evolved the ability to tolerate harsh winters by undergoing a period of endodormancy (rest), during which cold-acclimated meristems are less prone to DA when trees are exposed to unseasonal episodes of warming (
Advances in spring phenology due to climate change can occur under two scenarios. In the first scenario, a faster than normal accumulation of heat-units by ecodormant buds occurs due to earlier and warmer spring-like temperatures (
On the other hand, proponents of a possible decline in the advancement or delay in spring phenology by warming climate make their case as follows. They suggest that elevated winter temperature may result in a chilling-deficit, i.e., reduced duration and/or sum of cold. And since heat unit requirement for spring phenology is believed to be inversely correlated with the chill accumulation during dormancy (
Although the focus of this mini-review is not on bud dormancy, it is relevant to note that several studies have associated the genetic regulation of chilling requirement and dormancy with Dormancy Associated MADs-box (DAM) genes in peach (
C-repeat binding factor-binding motifs have been identified in promoters of several DAM genes and an EBB homolog in apple (
Current research has highlighted the impact of dormancy status and spring phenology on the propensity of trees to deacclimate. Spring-phenology is an outcome influenced by both the chilling and heat unit requirements of overwintering tree species. The fact that chill- and heat-units can be satisfied by the same temperatures for certain species (
Future Directions
The past 50 years of research has provided a wealth of information on the genetic and molecular regulation of plant cold hardiness, as well as the regulation of dormancy. These advances have been fueled by new technologies associated with high-throughput sequencing, genetic mapping, and transformation technologies. In particular the regulatory role of CBF genes in freezing tolerance, and of DAM genes in the regulation of chilling requirement stand out as major advances. The discovery that CBF activity is regulated continually and at various levels, helps explain, at least in part, why slightly different treatment of plants with respect to light, duration and rate of low temperature treatment for example, lead to different outcomes with respect to their frost tolerance. Notable advances have also been made with the use of high-resolution infrared thermography in our understanding of ice nucleation and propagation (
Future studies will need to better understand the cross-talk that occurs between different plant developmental processes and how it can be manipulated in a prescribed manner. A key question will be whether processes that determine cold hardiness can be separated from processes that restrict growth. Can CBF genes be regulated in a manner that removes their negative impact on growth and reproductive output? What are the genetic mechanisms that can be used to tease these processes apart? Which CBF gene or gene variant present in more frost tolerant species is best targeted for manipulation and how can epigenetic modifications affecting their activity best be harnessed?
Although, not as glamorous, a comprehensive understanding of the underlying biophysical mechanisms responsible for freeze avoidance, especially in woody plants, is still lacking. Deep supercooling of xylem parenchyma (
Statements
Author contributions
MW was responsible for the general overview of the opinions stated in the manuscript and any faults or shortcoming in logic directly fall on him. AN contributed the overview of CBF regulation, and RA the information on the importance of deacclimation in a changing climate. All authors reviewed and agreed with the final version of the submitted manuscript.
Funding
Research on CBF in fruit trees in the Wisniewski lab was supported by the United States Department of Agriculture – Agricultural Research Service (USDA-ARS).
Acknowledgments
The authors apologize to all colleagues whose relevant work is not quoted due to space limitations.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
freezing tolerance, ice nucleation, cold acclimation, deacclimation, dormancy, C-repeat binding factor (CBF), DAM genes, antifreeze protein (AFP)
Citation
Wisniewski M, Nassuth A and Arora R (2018) Cold Hardiness in Trees: A Mini-Review. Front. Plant Sci. 9:1394. doi: 10.3389/fpls.2018.01394
Received
19 July 2018
Accepted
03 September 2018
Published
20 September 2018
Volume
9 - 2018
Edited by
Steven Henry Strauss, Oregon State University, United States
Reviewed by
David Horvath, Red River Valley Agricultural Research Center, Agricultural Research Service (USDA), United States; Sofia Valenzuela, Universidad de Concepción, Chile
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© 2018 Wisniewski, Nassuth and Arora.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Michael Wisniewski, michael.wisniewski@ars.usda.gov Annette Nassuth, anassuth@uoguelph.ca Rajeev Arora, rarora@iastate.edu
This article was submitted to Plant Biotechnology, a section of the journal Frontiers in Plant Science
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