Abstract
Sulfur is an essential nutrient in plants as a constituent element of some amino acids, metal cofactors, coenzymes, and secondary metabolites. Not surprisingly, sulfur deficiency decreases plant growth, photosynthesis, and seed yield in both legumes and non-legumes. In nodulated legumes, sulfur supply is positively linked to symbiotic nitrogen fixation (SNF) and sulfur starvation causes three additional major effects: decrease of nodulation, inhibition of SNF, and slowing down of nodule metabolism. These effects are due, at least in part, to the impairment of nitrogenase biosynthesis and activity, the accumulation of nitrogen-rich amino acids, and the decline in leghemoglobin, ferredoxin, ATP, and glucose in nodules. During the last decade, some major advances have been made about the uptake and metabolism of sulfur in nodules. These include the identification of the sulfate transporter SST1 in the symbiosomal membrane, the finding that glutathione produced in the bacteroids and host cells is essential for nodule activity, and the demonstration that sulfur assimilation in the whole plant is reprogrammed during symbiosis. However, many crucial questions still remain and some examples follow. In the first place, it is of paramount importance to elucidate the mechanism by which sulfur deficiency limits SNF. It is unknown why homoglutahione replaces glutathione as a major water-soluble antioxidant, redox buffer, and sulfur reservoir, among other relevant functions, only in certain legumes and also in different tissues of the same legume species. Much more work is required to identify oxidative post-translational modifications entailing cysteine and methionine residues and to determine how these modifications affect protein function and metabolism in nodules. Likewise, most interactions of antioxidant metabolites and enzymes bearing redox-active sulfur with transcription factors need to be defined. Solving these questions will pave the way to decipher sulfur-dependent mechanisms that regulate SNF, thereby gaining a deep insight into how nodulated legumes adapt to the fluctuating availability of nutrients in the soil.
Introduction
In this minireview, we will address the central role of sulfur in symbiotic nitrogen fixation (SNF). The legume-rhizobia symbiosis, the most relevant in agronomical terms, is the result of a complex chemical dialog between the two partners, leading to the formation of unique organs, the nodules, on the roots. During root infection, the bacteria become entrapped within organelle-like structures termed symbiosomes, where the bacteria differentiate into bacteroids. The symbiosomes are surrounded by the symbiosomal membrane, which allows an active metabolic exchange between both symbionts. Bacteroids express the nitrogenase enzyme complex that reduces N2 to ammonia. This reaction requires high amounts of ATP and low O2 concentrations to prevent the irreversible inactivation of the enzyme. At least two mechanisms maintain a low but steady O2 concentration in nodules: an O2 diffusion barrier in the mid-inner cortex and leghemoglobin in the cytoplasm of infected cells (). In functioning nodules, the bacteroids provide the plant cells with ammonium and amino acids, whereas the plant provides the nodule cells with photosynthetically derived sucrose. This sugar is translocated through the phloem from the shoot to the nodules, where it is metabolized to phosphoenolpyruvate via the glycolytic pathway and then to malate by the successive action of phosphoenolpyruvate carboxylase and malate dehydrogenase. Malate is taken up by the bacteroids and oxidized to CO2 and water to obtain the ATP and reducing power required for N2 fixation (; ).
The key enzyme of SNF is nitrogenase, which consists of two proteins: an Fe protein (dinitrogenase reductase) and a MoFe protein (dinitrogenase). The Fe protein is a homodimer (γ2) encoded by the nifH gene and contains a single [4Fe-4S] cluster at the interface of the two subunits, whereas the MoFe-protein is a heterotetramer (α2β2) encoded by the nifDK genes and contains two [8Fe-7S] clusters (P-clusters) at each of the α-β interfaces and one FeMo cofactor [7Fe-9S-Mo-X + R-homocitrate] within the active site in each α subunit (). Thus, nitrogenase is exceptionally rich in sulfur, which suggests that this element may become limiting in symbiosis. Another nodule Cys-rich protein is ferredoxin, an electron transporter that donates electrons to nitrogenase. The protein from Bradyrhizobium japonicum bacteroids purified from soybean nodules has two [4Fe-4S] clusters ().
Sulfur Effects on Legume Plant Growth, Nodulation, and Nitrogen Fixation
Sulfur is an essential nutrient for plants because it is a constituent of the amino acids cysteine (Cys) and methionine (Met), metal cofactors, coenzymes, and secondary metabolites (reviewed by ). As occurs in other plants, sulfur deficiency in legumes decreases plant growth, photosynthesis, and yield (Figure 1). However, nodulated legumes have a high demand for sulfur and SNF is more sensitive to sulfur deficiency than is nitrate uptake (; ). Not surprisingly then, legumes with a high sulfur supply show greater rates of N2 fixation and, conversely, legumes grown on sulfur-poor soils have lower nitrogenase activity and readily respond to sulfur fertilizers by increasing yield and nitrogen content (; ). In nodulated legumes sulfur deficiency triggers at least three types of effects: decrease of nodulation, direct inhibition of N2 fixation, and general alteration of nodule metabolism (Figure 1). In white clover (Trifolium repens), the effect of sulfur deficiency on nodulation was evidenced by an important reduction in the nodule number and in the nodule mass per root length; this decrease in nodulation could be attributed to a nitrogen-dependent negative feedback as a result of the high accumulation of nitrogen-rich amino acids (arginine, asparagine, and histidine) in nodulated roots (). Conversely, a high sulfur supply to plants markedly increases nodulation and SNF (; ).
FIGURE 1
The lower SNF in sulfur-deficient plants may be attributed not only to a decrease in nodulation but also to a direct effect on nitrogenase and a general down-regulation of nodule metabolism. Notably, nodules of sulfur-deficient plants have lower rates of nitrogenase biosynthesis and activity (
Sulfate Uptake and Assimilation in Nodule Host Cells and Bacteroids
Sulfur is taken up as sulfate by plant cells through sulfate transporters and needs to be reduced to organic sulfide (Figure 2). The assimilation of sulfate starts with its activation via adenylation to adenosine-5′-phosphosulfate (APS) catalyzed by ATP sulfurylase. APS is then successively reduced to sulfite and sulfide by APS reductase (APSR) and sulfite reductase (SIR), respectively. Sulfide is incorporated into O-acetylserine by O-acetylserine(thiol)lyase (OAS) yielding Cys. In turn, O-acetylserine is synthesized from serine and acetyl-coenzyme A by serine acetyltransferase (SAT). Some of these enzymes occur as isoforms localized to different cellular compartments. In Arabidopsis thaliana, OAS-A1, OAS-B, and OAS-C are in the cytosol, chloroplasts, and mitochondria, respectively (
FIGURE 2

Schematics of sulfur metabolism in legume nodules. In the cytosol, some common reactions affecting the thiol group of Cys residues of proteins (P) are indicated. These include sulfenylation (P-SOH), sulfinylation (P-SO2H), sulfonylation (P-SO3H), persulfidation (P-S-SH), S-nitrosylation (P-SNO), glutathionylation (P-S-S-G, where G is a glutathione molecule linked to a protein Cys residue through its thiol group), and formation of mixed disulfides (P-S-S-P’, where P and P’ may be identical or different proteins). Note that sulfenylation, glutathionylation, and formation of mixed disulfide are reversible, whereas sulfinylation may be irreversible and sulfonylation is irreversible. For simplicity, we omit reactions such as Cys synthesis that may also occur in the mitochondria. Abbreviations are as indicated in Table 1. Cyst, cystathionine; (h)GSSG, (homo)glutathione disulfide; HCys, homocysteine; MetSO, methionine sulfoxide; OAcSer, O-acetylserine.
On the other hand, Met is synthesized from Cys in the plastids by the sequential action of cystathionine γ-synthase (CGS), cystathionine β-lyase (CBL), and methionine synthase (MetS). However, in A. thaliana and legumes, there are also cytosolic MetS isoforms that provide Met for the synthesis of ethylene, polyamines, and nicotianamine. This requires the prior activation of Met to S-adenosylmethionine by S-adenosylmethionine synthase (SAMS) (reviewed by
Over the last two decades, the role of sulfate transport and metabolism in SNF has attracted increasing attention. The first indication that sulfate is exchanged between the two symbiotic partners came from the proteomic identification of a sulfate transporter in the symbiosomal membrane of L. japonicus (
Sulfur metabolism is also very active and relatively complex in rhizobia. Figure 2 shows the key steps of the biosynthesis of Cys and Met in the bacteroids. The first step of Cys synthesis involves the activation of sulfate and may occur through two enzyme complexes, NodPQ and CysDN, yielding APS and 3′-phosphoadenosine-5′-phosphosulfate (PAPS) (
The information about the transport and/or synthesis of Cys and Met in rhizobia and bacteroids is quite confusing because differences may exist between rhizobial species. A search in the UniProtKB proteome database suggests that rhizobia have no Cys transporters but do have several Met transporters. It can thus be argued that the plant is able to provide Met to the bacteroids, although there is still no evidence for a specific Met transporter in the symbiosomal membrane. Working with bean plants (Phaseolus vulgaris),
A peculiar symbiotic function of sulfur in the bacteroids is the sulfation of nodulation (Nod) factors and of cell surface polysaccharides. Nod factors are lipo-chitooligosaccharide signal molecules that are crucial for the onset of symbiosis because they elicit root hair deformation and nodule organogenesis. Sulfation of Nod factors is catalyzed by the sulfotransferase activity of NodH (
Biosynthesis, Regulation, and Function of Thiols in Nodules
In plants and other organisms, Cys is a precursor of GSH, which is involved in multiple physiological processes of plants such as sulfur transport and storage, cellular redox homeostasis, regulation of the cell cycle, responses to abiotic and biotic stress, and heavy metal detoxification (reviewed by
In nodules, γECS is localized in the plastids, whereas GSHS and hGSHS are localized in the plastids and cytosol (
Several lines of evidence underline the importance of GSH for SNF. The nodule concentration of GSH (or hGSH) and N2-fixing activity are positively correlated and both decline with nodule senescence (reviewed by
The tripeptides GSH and hGSH play a role in metal detoxification as precursors of phytochelatins and homophytochelatins (
In addition to thiol metabolites, some enzymes have catalytic thiol groups that confer them important roles as antioxidants and signal transmitters. Thiol peroxidases are non-heme proteins encoded by large multigene families that include peroxiredoxins (Prxs) and glutathione peroxidases (Gpxs) (reviewed by
Other enzymes of utmost importance in Cys-mediated antioxidant protection and redox regulation are Trxs, glutaredoxins (Grxs), and glutathione transferases (GSTs). Many isoforms of these enzymes have been detected in nodules (Table 1). In L. japonicus, we identified 14 Trxs and three NADPH-thioredoxin reductases (NTRs). Most of them are expressed in nodules, which suggests the functioning of an NTR-Trx-Prx-Gpx redox system in nodules (
Table 1
| Enzyme | Abba | Examples | Referenceb |
|---|---|---|---|
| Plant Cys metabolism | |||
| Sulfate transporter | SULTR | SULTR1, SULTR3 | (mRNA) |
| Symbiotic sulfate transporter 1 | SST1 | SST1 | |
| ATP sulfurylase | ATPS | ATPS | |
| Adenosine 5′-phosphosulfate reductase | APR | APR | |
| Sulfite reductase | SIR | SIR | (mRNA) |
| O-Acetylserine(thiol)lyase | OAS | OAS-A1, OAS-B | |
| Serine acetyltransferase | SAT | SAT2, SAT3 | (mRNA) |
| γ-Glutamylcysteine synthetase | γECS | γECS | |
| Glutathione synthetase | GSHS | GSHS | |
| Homoglutathione synthetase | hGSHS | hGSHS | |
| Peroxiredoxins | Prxs | PrxIIB, PrxIIF | |
| Glutathione peroxidases | Gpxs | Gpx1, Gpx3 | |
| Thioredoxins | Trxs | Trxh1, Trxo, Trxs1, Trxs2 | |
| NADPH-thioredoxin reductases | NTRs | NTRA, NTRB, NTRC | |
| Glutaredoxins | Grxs | GrxC2, GrxC4 | |
| Glutathione transferases | GSTs | GST9, GST15, GST22 | |
| Cysteine-rich peptides | NRC | NRC247, NRC335 | |
| Plant Met metabolism | |||
| Cystathionine γ-synthase | CGS | CGS | |
| Cystathionine β-lyase | CBL | CBL | |
| Methionine synthase | MetS | MetS1, MetS2, MetS3 | |
| S-Adenosylmethionine synthase | SAMS | SAMS | |
| Bacteroid Cys metabolism | |||
| Sulfate binding transporter (ABC transporter) | SulABCD | SulABCD | |
| ATP sulfurylase | NodPQ/CysDN | NodPQ/CysDN | |
| Serine acetyltransferase | CysE | CysE | |
| Adenosine 5′-phosphosulfate reductase | CysH | CysH | |
| Sulfite reductase | CysJ | CysJ | (mRNA) |
| Cysteine synthase | CysK | CysK | |
| γ-Glutamylcysteine synthetase | GSH-A | GSH-A | |
| Glutathione synthetase | GSH-B | GSH-B | |
| Glutaredoxins | Grxs | Grx1, Grx2 | |
| Bacteroid Met metabolism | |||
| Cystathionine γ-synthase | MetB | MetB | |
| Cystathionine β-lyase | MetC | MetC | |
| Methionine synthase | MetH | MetH |
Proteins involved in Cys and Met metabolism in the host cells and bacteroids of legume nodules.
aSome common abbreviations.bReferences of studies where the protein and/or enzyme activity has been detected. To our knowledge, for some proteins, marked as “(mRNA)”, there are only available studies at the mRNA level.
The Grx enzyme family is still more complex, with ∼30 isoforms identified in vascular plants (
Finally, GSTs constitute a ubiquitous superfamily of enzymes, with 25 genes described in soybean (Glycine max) and 47 in A. thaliana. They catalyze the conjugation of xenobiotics and secondary metabolites with GSH (and probably of hGSH); the GSH-conjugates are then imported into the vacuoles by ATP-binding cassette transporters and degraded (reviewed by
Post-Translational Sulfur-Related Modifications and Redox Signaling in Nodules
The Cys side chain is a potent nucleophile that readily reacts with oxidants and electrophilic species. In proteins, the thiol group often plays an important role in catalysis and is a major site of post-translational modifications (PTMs) that include oxidation to disulfide (-S-S-), sulfenic (-SOH), sulfinic (-SO2H), and sulfonic (-SO3H) acids; S-nitrosylation (-SNO); persulfidation (-SSH); and glutathionylation (-SS-glutathione) (Figure 2). These properties make the thiol group a major actor in intracellular redox signaling (
A study based on the use of chemical and genetic probes that specifically trap sulfenic acid on Cys residues allowed the identification of sulfenylated proteins at different stages of the M. truncatula–S. meliloti symbiosis (
The information on protein S-nitrosylation in nodules is still scant. Nodules contain GSH and hGSH that react with NO to yield S-nitrosogluthathione and S-nitrosohomoglutathione (Figure 2). These S-nitrosothiols may act as NO reservoirs and donors in nitrosylation reactions. The enzyme S-nitrosoglutathione reductase (GSNOR) catalyzes the breakdown of S-nitrosogluthathione and thereby modulates protein S-nitrosylation (
Together with Cys, sulfur-containing Met is the amino acid most susceptible to oxidation. The process is termed Met sulfoxidation and yields a mixture of Met-S-sulfoxide and Met-R-sulfoxide. The reduction back to Met is catalyzed by two methionine sulfoxide reductases, MsrA and MsrB, that reduce, respectively, the S and R epimers. These enzymes are present in most organisms, from bacteria to humans, and are emerging as novel regulators of protein function in plant cells (
Conclusion
Compelling evidence has accumulated to conclude that sulfur metabolism is of paramount importance for SNF. Some breakthroughs have been the identification of the symbiosomal SST1 transporter, the finding that GSH produced by both symbiotic partners is critical for nodule functioning, and the demonstration that sulfur assimilation in plant tissues is reprogrammed during the onset of symbiosis. Yet it is imperative to define the mechanism by which sulfur deficiency limits SNF, establishing the time course of molecular and cellular events, and to ascertain whether such a mechanism is conserved between legumes having indeterminate and determinate nodulation. To this end, it seems critical to determine the complete profiles of metabolites and the activities of carbon metabolism enzymes in nodules, as well as to elucidate how the transport and assimilation of sulfate is regulated inside the nodules. Likewise, it is important to ascertain the differences in sulfur metabolism between indeterminate and determinate nodules. An outstanding example is the presence, exclusively in indeterminate nodules, of symbiotic-specific Trxs that regulate the redox state of Cys-rich peptides involved in bacteroid differentiation. Information is also lacking about the synthesis and degradation of Cys and GSH in the bacteroids and nodule host cells. To date there is no explanation why hGSH replaces GSH only in some legumes and tissues within the same legume species. There are very few studies aimed at identifying oxidative PTMs of Cys and Met residues and their impact on protein function in nodules. Two of them, glutathionylation and persulfidation, have not reported so far in bacteroid and/or host cell proteins of nodules. Also, most of the interactions of (h)GSH, Prxs, Gpxs, and Trxs with enzymes and transcription factors are yet to be defined. Addressing all these questions will result in the discovery of novel regulatory mechanisms involved in SNF and in the adaptation of nodulated legumes to changing environmental conditions.
Statements
Author contributions
MB and MM wrote the manuscript. SW performed proteome database mining and provided helpful information. All authors agreed with submission.
Funding
Research from our laboratory has been funded by grants from the Spanish Ministry of Economy and Competitivity (AGL2014-53717-R and AGL2017-85775-R, co-funded by Fondo Europeo de Desarrollo Regional). SW has been funded by The Austrian Science Fund (DK Plus, W 1257-820).
Acknowledgments
We thank Carmen Pérez-Rontomé for help with the figures and the two reviewers for helpful comments on the manuscript.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
bacteroids, cysteine, (homo)glutathione, legume nodules, sulfur metabolism, symbiosis
Citation
Becana M, Wienkoop S and Matamoros MA (2018) Sulfur Transport and Metabolism in Legume Root Nodules. Front. Plant Sci. 9:1434. doi: 10.3389/fpls.2018.01434
Received
26 June 2018
Accepted
10 September 2018
Published
10 October 2018
Volume
9 - 2018
Edited by
Yanjie Xie, Nanjing Agricultural University, China
Reviewed by
Saad Sulieman, University of Khartoum, Sudan; Maryam Nasr Esfahani, Lorestan University, Iran
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© 2018 Becana, Wienkoop and Matamoros.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Manuel Becana, becana@eead.csic.es
This article was submitted to Plant Physiology, a section of the journal Frontiers in Plant Science
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