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ORIGINAL RESEARCH article

Front. Plant Sci.

Sec. Technical Advances in Plant Science

Crop GraphRAG: Pest and Disease Knowledge Base Q&A System for Sustainable Crop Protection

Provisionally accepted
  • Chinese Academy of Agricultural Sciences, Beijing, China

The final, formatted version of the article will be published soon.

Intelligent prevention and control of crop diseases and pests is a critical link in safeguarding food security. However, agricultural practitioners often face fragmented information and low retrieval efficiency when seeking accurate, actionable knowledge, and general-purpose large language models are prone to inaccurate or erroneous answers in specialized domains. To address this problem, we assembled a large-scale corpus of knowledge on crop diseases and pests and, via entity and relation extraction, constructed a multi-relational knowledge graph covering crops, diseases, pests, symptoms, and control measures. By retrieving adjacency subgraphs for the relevant entities together with summary-based passage retrieval, we designed Crop GraphRAG, a new framework that integrates knowledge graphs with retrieval-augmented generation (RAG), thereby enabling local knowledge-base question answering for crop disease and pest management. To evaluate performance, we curated a domain-specific test suite of question–answer pairs and conducted comparative and ablation experiments, which demonstrate advantages in answer accuracy and coverage while effectively suppressing hallucinated content. These results verify the practical utility of the Crop GraphRAG 2 framework for vertical-domain question answering, mitigate the limitations of large language models in specialized agricultural contexts, and provide a pragmatic tool for intelligent QA in the agricultural domain.

Keywords: Diseases and pests, knowledge graph, RAG, Intelligent question answering system, crop protection

Received: 01 Sep 2025; Accepted: 08 Dec 2025.

Copyright: © 2025 Wu, Xie, Wang, Fan, Li and Zhibo. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence:
Nengfu Xie
Meng Zhibo

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