Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Accepted on 07 May 2025

Systematic identification and analysis of WRKY transcription factors reveals the role of MrWRKY14 in Myrica rubra

in Functional and Applied Plant Genomics

Frontiers in Plant Science

doi 10.3389/fpls.2025.1602750

Original Research

Accepted on 28 May 2025

Screening and Identification of Grain Sorghum Germplasm for salt tolerance at Seedling Stage

in Functional and Applied Plant Genomics

Wang Yu
Dongyang Li
Chunjuan Liu
Xiaolong Shi
Yan Huang
Chang Liu
Yufei Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2025.1610685

105 views

Original Research

Accepted on 27 May 2025

Improving Soybean Seed Sucrose Content using TILLING by Sequencing Analyses of The Soybean Sucrose Synthase Gene Family

in Functional and Applied Plant Genomics

Dounya Knizia
Erdem Anil
Yasser Salhi
Haiying Shi
Abdelhalim El Baze
My Abdelmajid Kassem
Naoufal Lakhssassi
Henry T Nguyen
Khalid Meksem

Frontiers in Plant Science

doi 10.3389/fpls.2025.1606321

137 views

Original Research

Accepted on 27 May 2025

Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica

in Functional and Applied Plant Genomics

Shihui Zhang
Yuyan Zhang
Sheng Luo
Haiyan Hu
Jin-Ping Liu
Wenqiang Wu
Jian Wang
Xiaolong Huang
HangGui Lai
Dongyi Huang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1556379

116 views

Original Research

Accepted on 27 May 2025

Complete Sequencing of the Mitochondrial Genome of Tea Plant Camellia sinensis cv. 'Baihaozao': Multichromosomal Structure, Phylogenetic Relationships, and Adaptive Evolutionary Analysis

in Functional and Applied Plant Genomics

Zhiyin Chen
Zixu Wang
Wei Zhou
Sijie Liu
Yuxin Xiao
Yihui Gong

Frontiers in Plant Science

doi 10.3389/fpls.2025.1604404

Data Report

Accepted on 27 May 2025

Whole Genome Sequencing of Neolamarckia macrophylla (Roxb.) Bosser and Neolamarckia cadamba (Roxb.) Bosser from Indonesia: A vital resource for completing chloroplast genomes and mining microsatellite markers

in Functional and Applied Plant Genomics

Fifi Gus Dwiyanti
Irsyad Kamal
Rahadian Pratama
Dhika Syaputra
Evayusvita Rustam
Ratna Uli Damayanti
Iskandar Z Siregar
Dede J Sudrajat

Frontiers in Plant Science

doi 10.3389/fpls.2025.1608577

Original Research

Published on 23 May 2025

Genome-wide identification and development of SSR molecular markers for genetic diversity studies in Ilex asprella

in Functional and Applied Plant Genomics

Jingchun Li
Changqian Quan
Rongchang Wei
Fan Wei
Qing Ma
Yuquan Huang
Meihua Xu
Danfeng Tang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1582154

436 views

Original Research

Published on 21 May 2025

Integrated metabolome-transcriptome analyses reveal key pathways regulating staminate catkin development and pollen maturation in Betula platyphylla

in Functional and Applied Plant Genomics

Xinying Liu
Jiayuan Shi
Jingyun Zhang
Bello Hassan Jakada
HuiLing Guo
Kehao Zeng
Xingguo Lan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1581560

525 views

Original Research

Accepted on 20 May 2025

Genome-Wide Identification and Characterization of Soybean GH9 Endo-1,4-β-Glucanases

in Functional and Applied Plant Genomics

Weimin Zhan
Huijuan Huang
Zaipan Cai
Zhenwei Zhao
Xuefu Lin
Yize Peng
Zhicheng Dong
Di Qin
Li Jiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1597668

123 views

Original Research

Accepted on 19 May 2025

Comparative transcriptome of B73-teosinte near-isogenic maize lines reveals key defense signaling and phytoalexins in response to Cercospora zeina infection

in Functional and Applied Plant Genomics

Xiaomeng Sun
Ruiyu Zhang
Zongping Wang
Hairun Wen
Junli Zhang
Naibin Yu
Zhe Wang
Huanhuan Tai
Qin Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1580016

132 views

Original Research

Accepted on 16 May 2025

GWAS and RNA-seq reveal novel loci and genes of lownitrogen tolerance in Cucumber (Cucumis sativus L.)

in Functional and Applied Plant Genomics

Huaxiang Wu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1602360

495 views

Mini Review

Accepted on 16 May 2025

Foundation models in plant molecular biology: Advances, challenges, and future directions

in Functional and Applied Plant Genomics

Feng Xu
Tianhao Wu
Qian Cheng
Xiangfeng Wang
Jun Yan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1611992

298 views

Original Research

Published on 16 May 2025

Selection and validation of reference genes for quantitative real-time PCR during the developmental stages of seeds in Sophora davidii

in Functional and Applied Plant Genomics

Jingjing Li
Shanrong Han
Zongren Xu
Bin Deng
Na Zheng
Yaqiong Su
Ziyao Qiao
Yun Yang
Hong Zhang
Zongsuo Liang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1485586

540 views

Data Report

Published on 16 May 2025

Transcriptome map and genome annotation of flax line 3896

in Functional and Applied Plant Genomics

Daiana A. Zhernova
Alexander A. Arkhipov
Tatiana A. Rozhmina
Alexander A. Zhuchenko
Nadezhda L. Bolsheva
Elizaveta A. Sigova
Ekaterina M. Dvorianinova
Elena V. Borkhert
Elena N. Pushkova
Nataliya V. Melnikova

Frontiers in Plant Science

doi 10.3389/fpls.2025.1520832

598 views

Original Research

Accepted on 15 May 2025

IRGL-RRI：Interpretable Graph Representation Learning for Plant RNA-RNA Interaction Discovery

in Functional and Applied Plant Genomics

Liao Qingquan
Xuchong Liu
Wei Zhao
Yu Tong
Fangzheng Xu
Xinxin Liu
Yifan Chen

Frontiers in Plant Science

doi 10.3389/fpls.2025.1617495

117 views

Editorial

Accepted on 14 May 2025

Editorial: Improving Yield and Quality of Cereal Crops: Exploring and Utilizing Genes for Green and Efficient Traits

in Functional and Applied Plant Genomics

Hao Zhou
Yuqing He
Ming Luo

Frontiers in Plant Science

doi 10.3389/fpls.2025.1617702

139 views