Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 08 Apr 2024

Genome-wide and pan-genomic analysis reveals rich variants of NBS-LRR genes in a newly developed wild rice line from Oryza alta Swallen

in Functional and Applied Plant Genomics

Fimanekeni Ndaitavela Shivute
Yi Zhong
Jinwen Wu
Yueming Bao
Wei Wang
Xiangdong Liu
Zijun Lu
Hang Yu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1345708

1,801 views

Original Research

Published on 04 Apr 2024

Low mutation rate of spontaneous mutants enables detection of causative genes by comparing whole genome sequences

in Functional and Applied Plant Genomics

Mao Suganami
Soichi Kojima
Hideki Yoshida
Masaki Mori
Mayuko Kawamura
Eriko Koketsu
Makoto Matsuoka

Frontiers in Plant Science

doi 10.3389/fpls.2024.1366413

2,709 views
1 citation

Original Research

Published on 02 Apr 2024

SmEIL1 transcription factor inhibits tanshinone accumulation in response to ethylene signaling in Salvia miltiorrhiza

in Functional and Applied Plant Genomics

Xiujuan Li
Man Xu
Ke Zhou
Siyu Hao
Liqin Li
Leran Wang
Wei Zhou
Guoyin Kai

Frontiers in Plant Science

doi 10.3389/fpls.2024.1356922

1,758 views
3 citations

Original Research

Published on 27 Mar 2024

Genome-wide association study and haplotype analysis reveal novel candidate genes for resistance to powdery mildew in soybean

in Functional and Applied Plant Genomics

Guoqiang Liu
Yuan Fang
Xueling Liu
Jiacan Jiang
Guangquan Ding
Yongzhen Wang
Xueqian Zhao
Xiaomin Xu
Mengshi Liu
Yingxiang Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1369650

2,611 views
2 citations

Original Research

Published on 27 Mar 2024

Genome-wide association studies identified OsTMF as a gene regulating rice seed germination under salt stress

in Functional and Applied Plant Genomics

Lifeng Liu
Yanling Ma
Heng Zhao
Lin Guo
Yan Guo
Chun-Ming Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1384246

2,158 views
3 citations

Original Research

Published on 25 Mar 2024

Genome-wide analysis of NPR1-like genes in citrus species and expression analysis in response to citrus canker (Xanthomonas axonopodis pv. citri)

in Functional and Applied Plant Genomics

Mobeen Ali
Muhammad Shafiq
Muhammad Zeshan Haider
Adnan Sami
Pravej Alam
Thamir Albalawi
Zuha Kamran
Saleh Sadiq
Mujahid Hussain
Muhammad Adnan Shahid

Frontiers in Plant Science

doi 10.3389/fpls.2024.1333286

2,757 views
12 citations

Original Research

Published on 21 Mar 2024

Genome-wide identification of GATA transcription factors in tetraploid potato and expression analysis in differently colored potato flesh

in Functional and Applied Plant Genomics

Xia Zhang
Rong Fan
Zhuo Yu
Xuerun Du
Xinyue Yang
Huiting Wang
Wenfeng Xu
Xiaoxia Yu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1330559

1,642 views
2 citations

Original Research

Published on 19 Mar 2024

Dissection of quantitative trait nucleotides and candidate genes associated with agronomic and yield-related traits under drought stress in rapeseed varieties: integration of genome-wide association study and transcriptomic analysis

in Functional and Applied Plant Genomics

Maryam Salami
Bahram Heidari
Bahram Alizadeh
Jacqueline Batley
Jin Wang
Xiao-Li Tan
Ali Dadkhodaie
Christopher Richards

Frontiers in Plant Science

doi 10.3389/fpls.2024.1342359

3,202 views
13 citations

Original Research

Published on 18 Mar 2024

Genetic analysis of cassava brown streak disease root necrosis using image analysis and genome-wide association studies

in Functional and Applied Plant Genomics

Leah Nandudu
Christopher Strock
Alex Ogbonna
Robert Kawuki
Jean-Luc Jannink

Frontiers in Plant Science

doi 10.3389/fpls.2024.1360729

2,217 views

Original Research

Published on 13 Mar 2024

Chromosome-level genome of Thymus mandschuricus reveals molecular mechanism of aroma compounds biosynthesis

in Functional and Applied Plant Genomics

Lin Jia
Ning Xu
Bin Xia
Wenjie Gao
Qingran Meng
Qiang Li
Ying Sun
Shoubin Xu
Miao He
Huiyan Gu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1368869

2,280 views

Original Research

Published on 11 Mar 2024

Physiological and biochemical mechanisms underlying the role of anthocyanin in acquired tolerance to salt stress in peanut (Arachis hypogaea L.)

in Functional and Applied Plant Genomics

Guanghui Li
Xin Guo
Yanbin Sun
Sunil S. Gangurde
Kun Zhang
Fubin Weng
Guanghao Wang
Huan Zhang
Aiqin Li
Xingjun Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1368260

4,079 views
9 citations

Original Research

Published on 07 Mar 2024

SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and Arabidopsis

in Functional and Applied Plant Genomics

Vaishnavi Mukkawar
Dipan Roy
Kawinnat Sue-ob
Andrew Jones
Cunjin Zhang
Prakash Kumar Bhagat
Sumesh M. Kakkunnath
Sigrid Heuer
Ari Sadanandom

Frontiers in Plant Science

doi 10.3389/fpls.2024.1274610

2,493 views
1 citation

Original Research

Published on 07 Mar 2024

Genomic insights into the clonal reproductive Opuntia cochenillifera: mitochondrial and chloroplast genomes of the cochineal cactus for enhanced understanding of structural dynamics and evolutionary implications

in Functional and Applied Plant Genomics

Jing Liu
Yuqing Feng
Cheng Chen
Jing Yan
Xinyu Bai
Huiru Li
Chen Lin
Yinan Xiang
Wen Tian
Zhechen Qi

Frontiers in Plant Science

doi 10.3389/fpls.2024.1347945

2,537 views
1 citation

Original Research

Published on 06 Mar 2024

Novel SNP markers for flowering and seed quality traits in faba bean (Vicia faba L.): characterization and GWAS of a diversity panel

in Functional and Applied Plant Genomics

Hannah Ohm
Johanna Åstrand
Alf Ceplitis
Diana Bengtsson
Cecilia Hammenhag
Aakash Chawade
Åsa Grimberg

Frontiers in Plant Science

doi 10.3389/fpls.2024.1348014

4,662 views
5 citations

Original Research

Published on 06 Mar 2024

The complete mitochondrial genome of Aglaia odorata, insights into its genomic structure and RNA editing sites

in Functional and Applied Plant Genomics

Zhigang Hao
Zhiping Zhang
Jinan Zhang
Xiufen Cui
Jianqiang Li
Laixin Luo
Yingbin Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1362045

2,226 views
5 citations

Original Research

Published on 05 Mar 2024

Using ddRADseq to assess the genetic diversity of in-farm and gene bank cacao resources in the Baracoa region, eastern Cuba, for use and conservation purposes

in Functional and Applied Plant Genomics

Angel Rafael Ramirez-Ramirez
Khaled Mirzaei
Miguel Menéndez-Grenot
Pablo Clapé-Borges
Georgina Espinosa-Lopéz
Igor Bidot-Martínez
Pierre Bertin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1367632

2,447 views
2 citations