Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 15 May 2024

Feature engineering of environmental covariates improves plant genomic-enabled prediction

in Functional and Applied Plant Genomics

Osval A. Montesinos-López
Leonardo Crespo-Herrera
Carolina Saint Pierre
Bernabe Cano-Paez
Gloria Isabel Huerta-Prado
Brandon Alejandro Mosqueda-González
Sofia Ramos-Pulido
Guillermo Gerard
Khalid Alnowibet
Roberto Fritsche-Neto

Frontiers in Plant Science

doi 10.3389/fpls.2024.1349569

4,688 views
5 citations

Original Research

Published on 14 May 2024

Genome-wide association studies reveal novel QTLs for agronomic traits in soybean

in Functional and Applied Plant Genomics

Dongwei Han
Xi Zhao
Di Zhang
Zhen Wang
Zhijia Zhu
Haoyue Sun
Zhongcheng Qu
Lianxia Wang
Zhangxiong Liu
Xu Zhu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1375646

3,364 views
3 citations

Original Research

Published on 14 May 2024

Longitudinal genome-wide association study reveals early QTL that predict biomass accumulation under cold stress in sorghum

in Functional and Applied Plant Genomics

Erica Agnew
Greg Ziegler
Scott Lee
César Lizárraga
Noah Fahlgren
Ivan Baxter
Todd C. Mockler
Nadia Shakoor

Frontiers in Plant Science

doi 10.3389/fpls.2024.1278802

2,977 views
4 citations

Original Research

Published on 10 May 2024

Auxin efflux carrier PsPIN4 identified through genome-wide analysis as vital factor of petal abscission

in Functional and Applied Plant Genomics

Yin Sun
Junqiang Chen
Yanchao Yuan
Nannan Jiang
Chunying Liu
Yuxi Zhang
Xiuhong Mao
Qian Zhang
Yifu Fang
Zhenyuan Sun

Frontiers in Plant Science

doi 10.3389/fpls.2024.1380417

2,999 views
3 citations

Editorial

Published on 09 May 2024

Editorial: Molecular mechanisms of fruit quality formation in fruit trees

in Functional and Applied Plant Genomics

Lihu Wang
Lixin Wang
Ze Peng
Xitong Fei
Hairong Wei

Frontiers in Plant Science

doi 10.3389/fpls.2024.1413866

1,884 views

Original Research

Published on 08 May 2024

Identification and functional analysis of the DOF gene family in Populus simonii: implications for development and stress response

in Functional and Applied Plant Genomics

Kewei Cai
Xiaoyu Xie
Lu Han
Junbo Chen
Jinwang Zhang
Hongtao Yuan
Jiajia Shen
Yishuang Ren
Xiyang Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1412175

2,422 views
5 citations

Original Research

Published on 29 Apr 2024

Coping with salinity stress: segmental group 7 chromosome introgressions from halophytic Thinopyrum species greatly enhance tolerance of recipient durum wheat

in Functional and Applied Plant Genomics

Sana Tounsi
Debora Giorgi
Ljiljana Kuzmanović
Olfa Jrad
Anna Farina
Alessandra Capoccioni
Rayda Ben Ayed
Faiçal Brini
Carla Ceoloni

Frontiers in Plant Science

doi 10.3389/fpls.2024.1378186

3,107 views
10 citations

Original Research

Published on 26 Apr 2024

Phenotypic characterization and candidate gene analysis of a short kernel and brassinosteroid insensitive mutant from hexaploid oat (Avena sativa)

in Functional and Applied Plant Genomics

Nikos Tsardakas Renhuldt
Johan Bentzer
Dag Ahrén
Sofia Marmon
Nick Sirijovski

Frontiers in Plant Science

doi 10.3389/fpls.2024.1358490

2,481 views

Original Research

Published on 25 Apr 2024

Physiological and metabolic analyses reveal the proline-mediated flowering delay mechanism in Prunus persica

in Functional and Applied Plant Genomics

Yeonju Park
Pandiyan Muthuramalingam
Jae Hoon Jeong
Seung Heui Kim
Hyunsuk Shin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1302975

2,868 views
2 citations

Original Research

Published on 23 Apr 2024

Complete mitochondrial genome of Angelica dahurica and its implications on evolutionary analysis of complex mitochondrial genome architecture in Apiaceae

in Functional and Applied Plant Genomics

Yuan-Yuan Li
You-Yan Liu
Xu Zeng
Ping Wu
Qing-Miao Li
Shun-Xing Guo
Zhi-Gang Hao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1367299

4,515 views
13 citations

Original Research

Published on 16 Apr 2024

Effects of different light intensity on leaf color changes in a Chinese cabbage yellow cotyledon mutant

in Functional and Applied Plant Genomics

Jianyu Huo
Ninan Zhang
Ying Gong
Yongrong Bao
Yinyin Li
Lugang Zhang
Shanshan Nie

Frontiers in Plant Science

doi 10.3389/fpls.2024.1371451

4,425 views
11 citations

Editorial

Published on 16 Apr 2024

Editorial: Omics technologies and fruit postharvest quality

in Functional and Applied Plant Genomics

Irene Romero
Ana Margarida Fortes
Fabrizio Costa

Frontiers in Plant Science

doi 10.3389/fpls.2024.1404708

1,576 views

Original Research

Published on 15 Apr 2024

C-terminally encoded peptide-like genes are associated with the development of primary root at qRL16.1 in soybean

in Functional and Applied Plant Genomics

Giriraj Kumawat
Dong Cao
Cheolwoo Park
Donghe Xu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1387954

1,910 views

Original Research

Published on 15 Apr 2024

The effects of foliar amino acid and Zn applications on agronomic traits and Zn biofortification in soybean (Glycine max L.)

in Functional and Applied Plant Genomics

Şule Han
İlker Sönmez
Moin Qureshi
Birgül Güden
Sunil S. Gangurde
Engin Yol

Frontiers in Plant Science

doi 10.3389/fpls.2024.1382397

4,456 views
6 citations

Original Research

Published on 12 Apr 2024

A bird’s-eye view: exploration of the flavin-containing monooxygenase superfamily in common wheat

in Functional and Applied Plant Genomics

Sherry Sun
Guus Bakkeren

Frontiers in Plant Science

doi 10.3389/fpls.2024.1369299

3,040 views
1 citation

Original Research

Published on 10 Apr 2024

Mitochondrial genome variation and intergenomic sequence transfers in Hevea species

in Functional and Applied Plant Genomics

Yingfeng Niu
Chengwen Gao
Jin Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1234643

2,496 views
5 citations

Original Research

Published on 10 Apr 2024

Genome-wide identification of Shaker K+ channel family in Nicotiana tabacum and functional analysis of NtSKOR1B in response to salt stress

in Functional and Applied Plant Genomics

Guang Yuan
Tongjia Nong
Oluwaseyi Setonji Hunpatin
Chuhan Shi
Xiaoqing Su
Fangzheng Xu
Yihui Wang
Zhaoting Zhang
Yang Ning
Haobao Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1378738

2,647 views
5 citations

Original Research

Published on 10 Apr 2024

Analysis of huanglongbing-associated RNA-seq data reveals disturbances in biological processes within Citrus spp. triggered by Candidatus Liberibacter asiaticus infection

in Functional and Applied Plant Genomics

Ruimin Li
Xinyou Wang
Yanan Hu
Guiyan Huang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1388163

4,901 views
9 citations

Original Research

Published on 08 Apr 2024

Genome-wide and pan-genomic analysis reveals rich variants of NBS-LRR genes in a newly developed wild rice line from Oryza alta Swallen

in Functional and Applied Plant Genomics

Fimanekeni Ndaitavela Shivute
Yi Zhong
Jinwen Wu
Yueming Bao
Wei Wang
Xiangdong Liu
Zijun Lu
Hang Yu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1345708

2,798 views
1 citation

Original Research

Published on 04 Apr 2024

Low mutation rate of spontaneous mutants enables detection of causative genes by comparing whole genome sequences

in Functional and Applied Plant Genomics

Mao Suganami
Soichi Kojima
Hideki Yoshida
Masaki Mori
Mayuko Kawamura
Eriko Koketsu
Makoto Matsuoka

Frontiers in Plant Science

doi 10.3389/fpls.2024.1366413

3,940 views
1 citation

Original Research

Published on 02 Apr 2024

SmEIL1 transcription factor inhibits tanshinone accumulation in response to ethylene signaling in Salvia miltiorrhiza

in Functional and Applied Plant Genomics

Xiujuan Li
Man Xu
Ke Zhou
Siyu Hao
Liqin Li
Leran Wang
Wei Zhou
Guoyin Kai

Frontiers in Plant Science

doi 10.3389/fpls.2024.1356922

2,717 views
6 citations

Original Research

Published on 27 Mar 2024

Genome-wide association studies identified OsTMF as a gene regulating rice seed germination under salt stress

in Functional and Applied Plant Genomics

Lifeng Liu
Yanling Ma
Heng Zhao
Lin Guo
Yan Guo
Chun-Ming Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1384246

3,413 views
7 citations

Original Research

Published on 27 Mar 2024

Genome-wide association study and haplotype analysis reveal novel candidate genes for resistance to powdery mildew in soybean

in Functional and Applied Plant Genomics

Guoqiang Liu
Yuan Fang
Xueling Liu
Jiacan Jiang
Guangquan Ding
Yongzhen Wang
Xueqian Zhao
Xiaomin Xu
Mengshi Liu
Yingxiang Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1369650

4,066 views
8 citations

Original Research

Published on 25 Mar 2024

Genome-wide analysis of NPR1-like genes in citrus species and expression analysis in response to citrus canker (Xanthomonas axonopodis pv. citri)

in Functional and Applied Plant Genomics

Mobeen Ali
Muhammad Shafiq
Muhammad Zeshan Haider
Adnan Sami
Pravej Alam
Thamir Albalawi
Zuha Kamran
Saleh Sadiq
Mujahid Hussain
Muhammad Adnan Shahid

Frontiers in Plant Science

doi 10.3389/fpls.2024.1333286

4,428 views
16 citations

623 articles

articles

Feature engineering of environmental covariates improves plant genomic-enabled prediction

Genome-wide association studies reveal novel QTLs for agronomic traits in soybean

Longitudinal genome-wide association study reveals early QTL that predict biomass accumulation under cold stress in sorghum

Auxin efflux carrier PsPIN4 identified through genome-wide analysis as vital factor of petal abscission

Editorial: Molecular mechanisms of fruit quality formation in fruit trees

Identification and functional analysis of the DOF gene family in Populus simonii: implications for development and stress response

Coping with salinity stress: segmental group 7 chromosome introgressions from halophytic Thinopyrum species greatly enhance tolerance of recipient durum wheat

Phenotypic characterization and candidate gene analysis of a short kernel and brassinosteroid insensitive mutant from hexaploid oat (Avena sativa)

Physiological and metabolic analyses reveal the proline-mediated flowering delay mechanism in Prunus persica

Complete mitochondrial genome of Angelica dahurica and its implications on evolutionary analysis of complex mitochondrial genome architecture in Apiaceae

Effects of different light intensity on leaf color changes in a Chinese cabbage yellow cotyledon mutant

Editorial: Omics technologies and fruit postharvest quality

C-terminally encoded peptide-like genes are associated with the development of primary root at qRL16.1 in soybean

The effects of foliar amino acid and Zn applications on agronomic traits and Zn biofortification in soybean (Glycine max L.)

A bird’s-eye view: exploration of the flavin-containing monooxygenase superfamily in common wheat

Mitochondrial genome variation and intergenomic sequence transfers in Hevea species

Genome-wide identification of Shaker K+ channel family in Nicotiana tabacum and functional analysis of NtSKOR1B in response to salt stress

Analysis of huanglongbing-associated RNA-seq data reveals disturbances in biological processes within Citrus spp. triggered by Candidatus Liberibacter asiaticus infection

Genome-wide and pan-genomic analysis reveals rich variants of NBS-LRR genes in a newly developed wild rice line from Oryza alta Swallen

Low mutation rate of spontaneous mutants enables detection of causative genes by comparing whole genome sequences

SmEIL1 transcription factor inhibits tanshinone accumulation in response to ethylene signaling in Salvia miltiorrhiza

Genome-wide association studies identified OsTMF as a gene regulating rice seed germination under salt stress

Genome-wide association study and haplotype analysis reveal novel candidate genes for resistance to powdery mildew in soybean

Genome-wide analysis of NPR1-like genes in citrus species and expression analysis in response to citrus canker (Xanthomonas axonopodis pv. citri)