Frontiers in Plant Science | Plant Bioinformatics

Original Research

Published on 06 Feb 2026

Integrative transcriptomic and metabolomic analyses provide insights into the effects of overexpression and knockout of NtLHT1 in different tissues

in Plant Bioinformatics

Jiaxin Xing
Wenyuan Wang
Qili Mi
Lumin Zhang
Changxin Cheng
Wenwu Yang
Li Xu
Jiarui Jiang
Haiying Xiang
Wanli Zeng

Frontiers in Plant Science

doi 10.3389/fpls.2026.1663088

382 views

Original Research

Accepted on 03 Feb 2026

Integrated Metabolomic, Proteomic, and Transcriptomic Analyses Reveal the Production of Bioactive Metabolites and Antidiabetic Effects in Mature Solanum lasiocarpum Fruit

in Plant Bioinformatics

Fangbo Li
Zixiao Jiang
Arunrat Chaveerach
Frédéric Anderson KONKOBO
Mohd Kafeel Ahmad Ansari
Gwendolyn Felocity Ban
Mamadou Abdoulaye Konare
Lamin Manjang
Zachary Rochelin
Yang Yang

Frontiers in Plant Science

Original Research

Published on 03 Feb 2026

Pan-genome analysis of wax apple (Syzygium samarangense) and its association with fruit size and cold tolerance

in Plant Bioinformatics

Xing Long
Liang Li
Ren Fang
Ji Zhang
Ping Zhou
Zhenyu An
Wenzhong Tang
Jinyan Yao
Xiuqing Wei

Frontiers in Plant Science

doi 10.3389/fpls.2026.1703197

337 views

Original Research

Accepted on 29 Jan 2026

Genome-wide identification and characterization of DCL, AGO, and RDR gene families and their abiotic stress responses in alfalfa (Medicago sativa L.)

in Plant Bioinformatics

Ming Xu
Hao Liu
Kai Zhu
Tian Zhang
Ruicai Long
Qingchuan Yang
Fei He
Changhong Guo

Frontiers in Plant Science

114 views

Original Research

Published on 29 Jan 2026

Integrative chloroplast omics in citrus: computational insights into genomic structural adaptation and phylogenetic relationships from 35 species

in Plant Bioinformatics

Su Lin
Jinfang Shu
Chengnan Kang
Wenxin Fang
Xingxing Liang
Kai Xu
Haijie Ma

Frontiers in Plant Science

doi 10.3389/fpls.2026.1769665

397 views

Original Research

Published on 29 Jan 2026

Identification of the RcWRKY family in Rubus chingii and analysis of its regulatory mechanisms for flavonoid synthesis

in Plant Bioinformatics

XiuRong Xu
Yan Cheng
Shiming Cheng

Frontiers in Plant Science

doi 10.3389/fpls.2025.1728584

341 views

Original Research

Accepted on 27 Jan 2026

Integrated Physiological, Multi-Omics Analyses Reveal Key Factors Underlying Seed Abortion in Dimocarpus longan

in Plant Bioinformatics

Hong-ye Qiu
Xian-quan Qin
Chen Fang
Yanjie Hou
Dong-bo Li
Jing-yi You
Ning Xu
Xiaolin Cai
Hongli Li

Frontiers in Plant Science

110 views

Original Research

Accepted on 26 Jan 2026

Pangenome-Driven Discovery and Comparative Genomics of Glycosyltransferase Genes in Camellia sinensis

in Plant Bioinformatics

Ligui Xiong
Haojing Shao
Jiuju Luo
Jing Liu
Xiaohuan Li
Zirong Li
Siwen Wu

Frontiers in Plant Science

153 views

Original Research

Published on 22 Jan 2026

DCSFormer: a high-precision method for cotton seedling point cloud organ segmentation

in Plant Bioinformatics

Tengfei Liu
Weili Sun
Haoyu Jiang
Luxu Tian
Chenhao Jin
Chenghao Wang
Jicheng Cao
Cairong Chen
Fei Hu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1724451

333 views

Original Research

Published on 22 Jan 2026

Chloroplast genomic characterization and phylogenetic analysis of eleven Persicaria medicinal plants from Guangxi, Southern China

in Plant Bioinformatics

Zhuxin Li
Yinghan Dai
Shanshan Zhai
Yingying Cao
Junyu Cheng
Meng Ni
Lijuan Song
Junyu Tao
Dapei Zhang
Ziheng Xu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1749088

639 views

Original Research

Published on 22 Jan 2026

Evolutionary dynamics and functional diversification of BBX transcription factors in C4 grasses from Setaria italica and Setaria viridis

in Plant Bioinformatics

Jiaxin Liu
Haoshan Zhang
Ling Zhao
Hua Wang
Shen Li
Yulu Wang
Lin Li
Luming Zou
Ting Zhang
Ruhong Cheng

Frontiers in Plant Science

doi 10.3389/fpls.2025.1701242

517 views

Original Research

Published on 22 Jan 2026

Geographic authentication of Amomum tsaoko seeds using fourier transform-near infrared spectroscopy combined with machine learning techniques and feature reduction analysis

in Plant Bioinformatics

Yinggang Zheng
Songping Lan
Haoran Hu
Xinwei Huang
Huan Wang
He Cao
Xiaoli Liu
Yaowen Yang
Shengguo Ji
Hui Xie

Frontiers in Plant Science

doi 10.3389/fpls.2025.1717851

405 views

Original Research

Published on 21 Jan 2026

Genome-wide identification of the class III peroxidase gene family and its association with fruit rind cracking in Cucumis melo

in Plant Bioinformatics

Yanping Hu
Tingting Zhang
Yushan Wang
Chongchong Wang
Baibi Zhu
Feng Wang
Yisong Chen
Min Wang
Yang Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2025.1706618

450 views

Original Research

Published on 21 Jan 2026

Genome-wide identification and functional validation of RLCK VII subfamily genes conferring disease resistance in broad bean (Vicia faba L.)

in Plant Bioinformatics

Fan Wang
Chenwei Liu
Hongchen Lu
Renchao Xu
Xiaochun Bian

Frontiers in Plant Science

doi 10.3389/fpls.2025.1712686

561 views

Original Research

Published on 20 Jan 2026

Genome-wide identification and expression analysis of the DA1-like gene family in melon (Cucumis melo)

in Plant Bioinformatics

Mingzhen Wang
Rui Wang
Hualin Zhang
Qianxing Wu
Mingming Dong
Yunhai Li
Lian Wu
Xiaofeng Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1742747

510 views

Mini Review

Published on 15 Jan 2026

Advances and challenges in plant molecular marker technologies and their applications in the artificial intelligence empowered era

in Plant Bioinformatics

Xiaoxu Li
Zhengrong Hu
Wen Yu
He Xie
Xuebo Wang
Pingjun Huang
Xinyao Zhang
Jiashuo Yang
Yangyang Li
Weicai Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1757949

1,056 views

Original Research

Published on 12 Jan 2026

Evolutionary algorithm-optimized feature fusion for accurate classification of shredded tobacco using multi-sensor data

in Plant Bioinformatics

Long Chen
Ni Tang
Xiao Wu
Yang Wang
Chuan He
Zongwei He
Lihua Xie
Xixiang Zhang
Xing Chen
Tao Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2025.1728353

695 views

Original Research

Published on 09 Jan 2026

Genome-wide identification and in silico analysis of GSTs reveals hormone mediated stress response in saffron

in Plant Bioinformatics

Muqaddas Bano
Xingnuo Li
Fang Liu
Ahmad Ali
Ejaz Hussain Siddiqi
Aidi Zhang
Xiujun Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1676384

1,204 views

Original Research

Accepted on 07 Jan 2026

Integrative Transcriptomic and Metabolomic Analysis Reveals the Molecular Basis of Leaf Variegation in Cymbidium ensifolium

in Plant Bioinformatics

Yu Jiang
Jin Wang
Xunliang Tu
Min Zhong
Bin Wan

Frontiers in Plant Science

149 views

Original Research

Published on 06 Jan 2026

Garlic-YOLO-DD: a lightweight object detection algorithm for garlic damage detection

in Plant Bioinformatics

Yun Gao
Xiaodan Ma
Zhennan Xia
Tao Qi
Xin Wang
Zhuang He
Gang Chen

Frontiers in Plant Science

doi 10.3389/fpls.2025.1702045

684 views

Original Research

Published on 05 Jan 2026

MTMEGPS: An R package for multi-trait and multi-environment genomic and phenomic selection using deep learning

in Plant Bioinformatics

Freddy Mora-Poblete
Javiera Valenzuela-Herrera
Matías Balach
Claudio J. Martínez-Araya
Carlos Maldonado

Frontiers in Plant Science

doi 10.3389/fpls.2025.1674985

998 views

Original Research

Published on 19 Dec 2025

Genetic analysis of wild walnuts in Xinjiang based on whole-genome resequencing

in Plant Bioinformatics

Yuyu Liu
Ping Zhang
Zhuli Wang
Jilong Fu
Jing Han
Yihang Gao
Zhibo Feng

Frontiers in Plant Science

doi 10.3389/fpls.2025.1645319

1,192 views

Original Research

Published on 18 Dec 2025

Transcriptomic analysis of Blumea laciniata responses to PEG-simulated drought stress

in Plant Bioinformatics

Hongjuan Wang
Yongdong Dai
Mingyuan Zhang
Yang Chen

Frontiers in Plant Science

doi 10.3389/fpls.2025.1695003

1,199 views

Original Research

Accepted on 16 Dec 2025

AG-Vision: A Dual-Module Approach for Tomato Leaf Disease Diagnosis

in Plant Bioinformatics

Asim Khan
Samee Ullah Khan
Irfan Hussain

Frontiers in Plant Science

201 views

796 articles

articles

Integrative transcriptomic and metabolomic analyses provide insights into the effects of overexpression and knockout of NtLHT1 in different tissues

Integrated Metabolomic, Proteomic, and Transcriptomic Analyses Reveal the Production of Bioactive Metabolites and Antidiabetic Effects in Mature Solanum lasiocarpum Fruit

Pan-genome analysis of wax apple (Syzygium samarangense) and its association with fruit size and cold tolerance

Genome-wide identification and characterization of DCL, AGO, and RDR gene families and their abiotic stress responses in alfalfa (Medicago sativa L.)

Integrative chloroplast omics in citrus: computational insights into genomic structural adaptation and phylogenetic relationships from 35 species

Identification of the RcWRKY family in Rubus chingii and analysis of its regulatory mechanisms for flavonoid synthesis

Integrated Physiological, Multi-Omics Analyses Reveal Key Factors Underlying Seed Abortion in Dimocarpus longan

Pangenome-Driven Discovery and Comparative Genomics of Glycosyltransferase Genes in Camellia sinensis

DCSFormer: a high-precision method for cotton seedling point cloud organ segmentation

Chloroplast genomic characterization and phylogenetic analysis of eleven Persicaria medicinal plants from Guangxi, Southern China

Evolutionary dynamics and functional diversification of BBX transcription factors in C4 grasses from Setaria italica and Setaria viridis

Geographic authentication of Amomum tsaoko seeds using fourier transform-near infrared spectroscopy combined with machine learning techniques and feature reduction analysis

Genome-wide identification of the class III peroxidase gene family and its association with fruit rind cracking in Cucumis melo

Genome-wide identification and functional validation of RLCK VII subfamily genes conferring disease resistance in broad bean (Vicia faba L.)

Genome-wide identification and expression analysis of the DA1-like gene family in melon (Cucumis melo)

Advances and challenges in plant molecular marker technologies and their applications in the artificial intelligence empowered era

Evolutionary algorithm-optimized feature fusion for accurate classification of shredded tobacco using multi-sensor data

Genome-wide identification and in silico analysis of GSTs reveals hormone mediated stress response in saffron

Integrative Transcriptomic and Metabolomic Analysis Reveals the Molecular Basis of Leaf Variegation in Cymbidium ensifolium

Garlic-YOLO-DD: a lightweight object detection algorithm for garlic damage detection

MTMEGPS: An R package for multi-trait and multi-environment genomic and phenomic selection using deep learning

Genetic analysis of wild walnuts in Xinjiang based on whole-genome resequencing

Transcriptomic analysis of Blumea laciniata responses to PEG-simulated drought stress

AG-Vision: A Dual-Module Approach for Tomato Leaf Disease Diagnosis