Abstract
Ionotropic glutamate receptors (iGluRs) are ligand-gated cation channels that mediate fast excitatory neurotransmission in the mammalian central nervous system. In the model plant Arabidopsis thaliana, a family of 20 glutamate receptor-like proteins (GLRs) shares similarities to animal iGluRs in sequence and predicted secondary structure. However, the function of GLRs in plants is little known. In the present study, a serine site (Ser-860) of AtGLR3.7 phosphorylated by a calcium-dependent protein kinase (CDPK) was identified and confirmed by an in vitro kinase assay. Using a bimolecular fluorescence complementation and quartz crystal microbalance analyses, the physical interaction between AtGLR3.7 and the 14-3-3ω protein was confirmed. The mutation of Ser-860 to alanine abolished this interaction, indicating that Ser-860 is the 14-3-3ω binding site of AtGLR3.7. Compared with wild type, seed germination of the glr3.7-2 mutant was more sensitive to salt stress. However, the primary root growth of GLR3.7-S860A overexpression lines was less sensitive to salt stress than that of the wild-type line. In addition, the increase of cytosolic calcium ion concentration by salt stress was significantly lower in the glr3.7-2 mutant line than in the wild-type line. Moreover, association of 14-3-3 proteins to microsomal fractions was less in GLR3.7-S860A overexpression lines than in GLR3.7 overexpression line under 150 mM NaCl salt stress condition. Overall, our results indicated that GLR3.7 is involved in salt stress response in A. thaliana by affecting calcium signaling.
Introduction
Abiotic stresses, such as flooding, drought, cold, salt, and heat stresses, limit plant growth and reduce crop yield. Among these, salt stress affects plants the most because of both osmotic and ion toxicity effects. Plants respond to the osmotic effect of salt stress by accumulating compatible solutes to adjust osmotic potential. Using a salt exclusion strategy, plants reduce salt in the cytosol through sodium proton (Na+) antiporters. For example, salt overly sensitive 1 (SOS1) is regulated by SOS2 and SOS3 and transports Na+ out of plant cells (Zhu, 2001). In addition, plants respond to salt stress through specific signal transduction pathways. Abscisic acid (ABA)–related gene expression is up-regulated and controls salt stress responses in plants under salt stress (; ).
The Arabidopsis genome contains about 57 putative cation-selective channels (). Among calcium (Ca2+) channels, there are Ca2+ influx channels that are thermodynamically passive and Ca2+ efflux channels that are thermodynamically active. Cyclic nucleotide-gated channels, glutamate receptor-like channels (GLRs), and two-pore channels have been reported for Ca2+ influx in previous studies (; ), while Ca2+ exchanger antiporters and P-type ATPase pumps have been reported for Ca2+ efflux (; ). To maintain Ca2+ concentration in the cytoplasm, the functioning of influx and efflux channels is in a dynamic equilibrium.
In mammals, GLRs play essential roles in cell-to-cell communication in the nervous system. In Arabidopsis thaliana, 20 GLRs (AtGLRs) share substantial similarity in protein sequence and predicted secondary structure with animal ionotropic glutamate receptor (iGluR) subunits (). Sequence similarities are shared among all known iGluR subunits, including the α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptor (AMPA), kainate receptor, N-methyl-d-aspartate (NMDA), and δ-receptors, suggesting that they also share a similar architecture. In plant cells, exogenous amino acids trigger a large, transient increase in cytosolic Ca2+ concentration (; ). In this case, the function of plant GLRs is similar to that of iGluRs (). However, the biological roles of GLR subunits in plants have not been clearly defined.
Ionotropic glutamate receptors are integral membrane proteins composed of four large subunits (homo-tetramers or hetero-tetramers) that form a central ion channel pore. The first evidence of this quaternary structure was provided by a single particle image of recombinant and native AMPA receptors obtained by electron microscopy (; ). Arabidopsis GLR channel structures have three transmembrane domains and an ion-pore loop when subunits combine into a functional tetramer () and, similar to iGluRs, present a putative ligand-binding domain formed by the interactions of the S1 and S2 domains.
Arabidopsis phenotypes resulting from mutations in or altered expressions of GLRs have provided different information. While AtGLR1.1 is involved in carbon/nitrogen (C/N) sensing (), AtGLR3.2, AtGLR3.3 and AtGLR3.6 mediate leaf to leaf wound signaling (); AtGLR3.6 also affects primary and lateral root development through cell cycle control (; ). Although AtGLR3.2, AtGLR3.3, and AtGLR3.4 affect lateral root development via Ca2+ signaling in the phloem (), the overexpression of AtGLR3.1 affected stomata closing behavior without affecting cytosolic Ca2+ (). Under abiotic stress, AtGLR3.4 showed sensitivity to touch and cold (). Alterations in pollen tube growth in glr1.2 mutants () and root gravitropism in glr3.3 mutants () might be related to impaired amino acid–gated Ca2+ signaling. Moreover, in glr1.2 mutants, D-serine increased Ca2+ cytosolic concentration in the pollen tubes (). Thus, the biological functions of GLRs in plants are not clear.
In plants, Ca2+ stimulates protein kinase activities through Ca2+-dependent protein kinases (CDPKs). The activities of CDPKs were first documented in pea (Pisum sativum) by . These unique enzymes are found in plants and some protozoa, and are characterized as Ca2+ sensors in plants. The CDPKs are encoded by a large multigene family consisting of 34 genes in Arabidopsis (Arabidopsis Genome Initiative, 2000) and 29 genes in rice (Oryza sativa). According to the conserved kinase domain sequence, CDPKs belong to a superfamily consisting of seven types of serine-threonine protein kinases, namely, CDPKs, CDPK-related kinases (CRKs), phosphoenolpyruvate carboxylase kinases (PPCKs), PEP carboxylase kinase-related kinases, calmodulin-dependent protein kinases, Ca2+ and calmodulin-dependent protein kinases, and sucrose nonfermenting-related serine/threonine-protein kinases (). The protein sequences of CRKs are most similar to that of CDPKs.
The 14-3-3 proteins were initially discovered in mammalian brain tissues () and were named based on their chromatography elution and starch–gel electrophoresis profiles. In Arabidopsis, transcripts have been detected for 12 of the 15 14-3-3 genes (GF14/phi, GF14/chi, GF14/omega, GF14/psi, GF14/upsilon, GF14/lamda, GF14/nu, GF14/kappa, GF14/mu, GF14/epsilon, GF14/omicron, and GF14/iota) (; ). The 14-3-3 proteins can form either homodimers or heterodimers () and are scaffold proteins that can bind many proteins (). In eukaryotes, 14-3-3 proteins regulate diverse cellular functions through hundreds of different protein–protein interactions. The biological functions of 14-3-3 proteins include kinase-mediated signal transduction, growth and development signaling, response to stress, and change of client protein activity (; ; ; ).
In plants, glutamate receptors are reported to be nonselective cation channels (NSCCs), which play a role in Ca2+ influx. Previous studies showed the biological functions of glutamate receptors in root elongation and abiotic stress responses. However, the functions of GLRs in plants are relatively unknown. Here, we identified and confirmed the phosphorylation site of AtGLR3.7, which can be phosphorylated by CDPK in vitro. The protein–protein interaction analyses carried out confirmed 14-3-3ω binding. We also investigated the biological function of AtGLR3.7. Results from the phenotyping of glr3.7 mutants showed that AtGLR3.7 is involved in salt stress response in Arabidopsis.
Materials and Methods
Plant Materials and Growth Conditions
All experiments were performed using A. thaliana Columbia ecotype (Col-0, wild type). Two glr3.7 transfer DNA (T-DNA) insertion mutants, namely, glr3.7-1 (SALK_022757) and glr3.7-2 (SALK_103942), were ordered from ABRC (Arabidopsis Biological Research Center, http://abrc.osu.edu/), and GLR3.7 overexpression (OE) lines (OE 5-6 and OE 10-2 and the serine point-mutated to alanine SA 10-2 and SA 15-6 lines) were generated by transgenics using the pEarleyGate104 vector. Seeds were surface sterilized with bleach [6% bleach: double distilled water (ddH2O) = 3: 7], and 0.02% Triton X-100 was applied for surface sterilization for 7 min followed by washes with sterilized ddH2O three times. Sterilized seeds were kept in darkness for 3 days at 4°C, then sown on solid half-strength Murashige and Skoog (MS) medium with 0.8% agar, and finally grown under long-day photoperiod conditions (16 h of light/8 h of darkness) at 22°C.
Fusion Peptide Design and Construction
Forward and reverse primers around 50 to 60 nucleotides long were ordered to be self-ligated by temperature gradient and had sticky end of AscI and NotI restriction enzyme recognition site and APG amino acids after restriction enzyme recognition site. After phosphorylated by polynucleotide kinase at 5′ end for 30 min, the double strand primer was constructed into NRV vector harboring glutathione-S-transferase (GST), red fluorescence protein (RFP), and Strep-tags as previously described () (Supplementary Table S1) and transformed into BL21 for fusion peptide expression.
Purification of GST-Tagged and 6His-Tagged Recombinant Proteins
Escherichia coli was incubated in the 40 mL 2xYT medium containing 200 μg ampicillin at 37°C overnight and then 400 mL 2xYT medium was added at 37°C for 3 h. After incubation, 220 μL isopropyl β-d-1-thiogalactopyranoside (IPTG, 1 M stock, 230 mg/ml) was added with final concentration of 0.5 mM and incubated 3 h at 28°C. The cells were centrifuged at 3,300 × g (Beckman Coulter J2-MC, USA) for 30 min under 4°C. The supernatant was discarded, and then 20 mL of lysis buffer containing 20 mM Tris pH 8.0, 500 mM NaCl, 10% glycerol, 0.5 mg/ml lysozyme, and 1 mM phenylmethylsulfonyl fluoride was added for 15 min. The cells were transferred to the 50 mL falcon tube and stored at −80°C. The cells were incubated in water around 40°C for dissolving, and the sonicator (Misonix XL2020, USA) was used to break the cells. After sonication, the cells lysate was centrifuged at 9,000 × g (Beckman Coulter J2-MC, USA) for 30 min under 4°C, and then supernatant was transferred to the new 50 mL falcon tube. One mL of GST-binding beads was added, which was washed with GST binding buffer containing 20 mM Tris pH 7.5, 100 mM NaCl, and 10% glycerol three times, and the solution was shaken for 1 to 3 h in the cold room. The GST binding beads were centrifuged, and the 10 mL Tris buffer (50 mM, pH7.5) was added to wash the beads, and the solution was transferred to the biospin columns (Bio-Rad); 1.5 mL 50 mM Tris buffer was used (pH 8.0), which contains 10 mM glutathione (30 mg/10 mL) to elute the recombinant proteins, and the elution was collected by a centrifugal filter (Amicon Ultra 30 K; Millipore). For 6His recombinant protein purification, E. coli was incubated in 40 mL 2xYT medium containing ampicillin (50 μg/mL) and shaking at 37°C overnight. Overnight culture was inoculated at 400 mL 2xYT with shaking at 37°C for 3 h and then induced with 0.5 mM IPTG and continue to grow at 28°C for 3 h. The cells were harvested by centrifugation at 9,000 × g (Beckman Coulter J2-MC, USA) for 30 min. The cell pellet was resuspended in lysis buffer and then stored at −80°C. The cells were thawed in 40°C water, sonicated, and then centrifuged for 30 min at 9,000 × g (Beckman Coulter J2-MC, USA). The supernatant was incubated with Ni-NTA resin (GE) at 4°C for 2 h and washed with first wash buffer containing 20 mM Tris pH 8.0, 10 mM imidazole, 500 mM NaCl, and 10% glycerol, and second wash buffer containing 20 mM Tris pH 8.0 and 100 mM NaCl. 6His recombinant proteins were eluted with 1.5 mL elution buffer containing 20 mM Tris pH 8.0, 300 mM imidazole, and 100 mM NaCl. The elution was collected with a centrifugal filter (Amicon Ultra 30 K; Millipore). Protein concentration measurement using Protein Assay Dye was based on the Bradford method (Cat. 500-0006; Bio-Rad).
In Vitro Kinase Assay
It was reported that a synthetic peptide corresponding to the C-terminus of AtGLR3.7 was phosphorylated by CDPKs in vitro (). In order to identify the phosphorylation site of AtGLR3.7, an in vitro kinase assay was carried out. According to the predicted conserved serine/threonine (Ser/Thr) residues, fusion peptides were designed for in vitro kinase assay (Supplementary Table S1). ACA2 and nitrate reductase can be phosphorylated by CDPKs (; ), and its recombinant fusion peptides containing the phosphorylation sites were used as positive controls. Purification of GST-tagged kinases (GST-CDPK3-6H and GST-CDPK16-6H) and substrates (wild-type and mutant variants of GST-GFP-Strep-tagged fusion peptides, as shown in Supplementary Table S1), and the in vitro kinase assay were carried out as previously described (). Cold ATP (50 μM, spiked with 1.25 μCi [γ-32P] ATP) was added to the reaction solution consisting of 30 ng purified CDPK, 3 μg fusion protein substrate, and 10 μL kinase reaction buffer, containing 20 mM Tris pH 7.5, 10 mM MgCl2, 1 mM EGTA pH 8.0, and 1.1 mM CaCl2, to start the kinase reaction. This reaction occurred at room temperature for 15 min, and it was stopped by adding 2 μL sodium dodecyl sulfate (SDS) sample buffer. All samples were loaded into a 12% SDS–polyacrylamide gel electrophoresis (PAGE) for electrophoresis, and γ-32P–labeled signals were normalized to the amount of protein, as determined from Coomassie brilliant blue stained gels after running SDS-PAGE. The γ-32P–labeled signals were detected on Typhoon 9400 image analyzer (GE Healthcare).
Site-Directed Mutagenesis
Because the GLR3.7 fusion peptides contained three potential phosphorylation sites (Ser-859, Ser-860, and Thr-858), point mutations were created by site-directed mutagenesis of either Ser or Thr to alanine (Ala) to identify at which site the phosphorylation occurred (Supplementary Table S1). Site-directed mutagenesis was performed using the QuikChange Lightning kit (Stratagene). Two complementary oligonucleotides containing the desired mutation, flanked by unmodified nucleotide sequences, were designed. Mutated nucleotides were amplified by polymerase chain reaction (PCR), and 2 μL of DpnI restriction enzyme was added directly to each amplification reaction and incubated at 37°C for 5 min to digest the parental supercoiled double stranded DNA (dsDNA). The DpnI-treated DNA (2 μL) was then transformed into DH5α competent cells.
Isolation of Arabidopsis Protoplasts
Arabidopsis protoplasts were isolated as previously described (). The leaves from 4-week-old plants were excised and treated with an enzyme solution (20 mM MES pH 5.7, 0.4 M mannitol, 20 mM KCl, 1% cellulose R10, 0.25% macerozyme R10, 20 mM KCl, 10 mM CaCl2, 5 mM β-ME, and 0.1% bovine serum albumin) at room temperature for 2 h. The enzyme solution containing Arabidopsis protoplasts was filtered through Miracloth and centrifuged in a 15-mL tube at 100 × g for 3 min (KUBOTA 2420) to pellet the protoplasts. The supernatant was removed, and the protoplasts were washed three times with W5 solution (154 mM NaCl, 125 mM CaCl2, 5 mM KCl, MES pH 5.7, and 5 mM glucose). The protoplasts were resuspended in MMG solution (MES pH 5.7, 0.4 M mannitol, and 15 mM MgCl2) to 2.5 × 105 protoplasts per milliliter before polyethylene glycol (PEG)–mediated transformation.
Bimolecular Fluorescence Complementation
A previous study showed that GLR3.7 could be a client of 14-3-3ω in Arabidopsis (). In bimolecular fluorescence complementation (BiFC) analysis, when two proteins interact with each other a yellow fluorescence signal is observed. Therefore, we used BiFC to confirm if GLR3.7 and 14-3-3ω have physical interaction. Because aminoacyclopropane-1-carboxylate synthase 7 (ACS7) and 14-3-3ω have been reported to interact in the cytosol (Yoon and Kieber, 2013; ), AtACS7 was used as the positive control. The BiFC analyses were carried out as previously described (; ). The open reading frame of AtGLR3.7 was amplified from cDNA and then inserted into the pEarleyGate201-YN or pEarleyGate202-YC vector driven by the 35S promoter (from Keqiang Wu’s lab, National Taiwan University) that was fused to yellow fluorescent protein (YFP)-N or YFP-C, in frame. Plasmids (YFP-N and YFP-C; 10 μg) and protoplasts (200 μL) were transferred to a 15-mL round-bottom tube and gently mixed before the addition of 110 μL PEG solution followed by incubation at room temperature for 10 min. The PEG solution containing protoplasts was then diluted with 550 μL W5 solution and gently mixed. Protoplasts were centrifuged at 100 × g for 3 min (KUBOTA 2420) to pellet the protoplasts. The supernatant was removed, and the protoplasts were washed two times with W5 solution, resuspended in 1 mL W5 solution in each well of a six-well tissue culture plate, and incubated at room temperature. After 12 to 16 h, YFP fluorescence was detected by confocal microscopy (TCS SP5; Leica).
Quartz Crystal Microbalance
The quartz crystal microbalance (QCM) analyses were carried out as previously described (). Briefly, 500 μL of 1% SDS was added to the sensor, and after 3 min, ddH2O was used to wash the sensor. PIRANHA solution (99% H2SO4: 30% H2O2 = 3:1; 3 μL) was then added to the sensor, and after 5 min, ddH2O was used to wash the sensor. This procedure was repeated twice. The sensor was moved into the AFFINIX QN μ molecular interaction analyzer (Initium Inc.), and the basic frequency was measured. Phosphate-buffered saline (PBS; 500 μL) was added to the sensor, and after the frequency stabilized, the GST-GLR3.7 protein was added to the sensor until the sensor coating saturated. The sensor was washed twice with PBS, and 500 μL of this buffer was then added to the sensor. The 6His-14-3-3ω recombinant protein was added to the sensor, and the dissociation constant (Kd) value was measured using AQUA software (Initium Inc.).
β-Glucuronidase Histochemical Analysis
For the β-glucuronidase (GUS) histochemical assay, the promoter region upstream of the start codon (2,000 bp) of AtGLR3.7 was amplified and cloned into the binary vector pMDC163 using the Gateway cloning system (Thermo Fisher Scientific). The resulting construct (proAtGLR3.7::GUS) was transformed into Arabidopsis Col-0 plants via the Agrobacterium tumefaciens strain GV3101. The expression of GUS in the T3 transgenic lines was observed by immersing the seedlings in GUS staining buffer (0.2% Triton X-100, 1 mM potassium ferrocyanide, 1 mM potassium ferricyanide, and 100 mM NaPO4, pH 7) containing 1 mM 5-bromo-4-chloro-3-indolyl-b-d-glucuronide (X-Gluc) and placing them under vacuum for 10 min. After incubation at 37°C for 8 to 16 h, the staining buffer was removed, and samples were cleared by sequential 70% (v/v) ethanol immersion.
Subcellular Localization of GLR3.7
The pEarleyGate 101 vector harboring 35S::GLR3.7-YFP was transformed into Nicotiana benthamiana by A. tumefaciens (GV3101) infiltration. Confocal microscopy (Delta vision, core; Applied Precision, Inc.) was used to observe the localization of the recombinant protein fused to YFP at the C-terminus of GLR3.7. AHA2 is a plasma membrane localization marker ().
RNA Extraction and PCR
Leaf samples were ground into powder with liquid nitrogen, and 1 mL REzolTM C&T reagent (PROTECH) with 200 μL of chloroform was used to isolate total RNA. Samples were centrifuged at 12,000 × g (Sigma 1-15K, Sigma Centrifuges) for 15 min and the resulting supernatants were moved to new 1.5-mL tubes. After adding 500 μL of isopropanol, samples were centrifuged at 12,000 × g (Sigma 1-15K) for 10 min. The resulting pellets were washed with 75% ethanol, resolved by diethyl pyrocarbonate (DEPC)-H2O, and 2 μg of each total RNA pellet were used for cDNA synthesis with the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems). The same amount of cDNA (2 μg) was used for semiquantitative PCR.
Primary Root Phenotype
Seedlings were grown vertically on half-strength MS medium with 0.8% agar for 4 days. Four-day-old seedlings were transferred to half-strength MS medium containing 125 mM NaCl and grown vertically for 6 days (16 h of light/8 h of darkness). Primary root length was then measured using ImageJ software (http://rsbweb.nih.gov/ij/).
Aequorin Bioluminescence
It is known that salt stress induces an increase in intracellular Ca2+ concentration, which in turn triggers a series of signal transmission reactions (; ). Previous studies have also found that the cytosolic Ca2+ concentration was significantly lower in the glr3.4 line than in Col-0 under salt-treated condition (). However, it is unclear whether GLR3.7 is involved in the regulation of cytosolic Ca2+ concentration. In the present study, 5-day-old seedlings were treated with 150 mM NaCl, and the aequorin (AEQ) luminescence test was used to determine Ca2+ concentration. AEQ Ca2+ reporter line was introduced for cytosolic Ca2+ concentration measurement (). Seeds of cross lines (AEQ × OE7-3, AEQ × glr3.7-1, AEQ × glr3.7-2) were placed on half-strength MS medium and grown at long-day photoperiod condition (16 h light/8 h darkness) and 25°C for 5 days. On a 96-well plate, three 5-day-old seedlings per cell were soaked in 100 μL reconstitution buffer (2 mM MES [pH 5.7], 10 mM CaCl2, 10 μM coelenterazine [ALFA]) and cultured at 25°C in the dark, overnight. After two washes with coelenterazine-free buffer (2 mM MES [pH 5.7], 10 mM CaCl2), seedlings were soaked in 100 μL of coelenterazine-free buffer for 1 h and kept at 25°C in the dark to keep the seedlings in equilibrium for about 5 min. After removing 50 μL of the coelenterazine-free buffer solution, 50 μL (twice the final concentration of NaCl or glutamate) of treatment buffer (2 mM MES [pH 5.7], 10 mM CaCl2, 300 mM NaCl or 2 mM glutamate) was added. When the reaction terminated, 100 μL of discharge buffer (1 M CaCl2/20% ethanol) was added to react with the remaining AEQ. When the cold reading reached 1% of the highest value, the detection was stopped (). The luminescence measured 30 s before the salt treatment was used as the control value. Luminescence was measured in the Varioskan lux multimode microplate reader (Thermo Fisher Scientific), and all buffers were added to the specified well using an autoinjector. The instrument was set to detect luminescence every 1 s, and each detection time was 500 ms. The total detection time was 1 to 3 min. Relative luminescence units were transformed into cytosolic Ca2+ concentrations (pCa) based on: 0.332588 (−log k) + 5.5593, where k = is the luminescence at every second/total luminescence (; ).
Purification of Microsomal Fractions
Arabidopsis seedlings were suspension cultured in media containing 0.5 × MS medium supplemented with 0.5% sucrose, pH 5.7 at twilight (25°C/16-h photoperiod, 10 µE m-2 s-1 light) to enrich root growth for 2 weeks followed by 150 mM NaCl salt treatment for 3 days. Microsomal fractions were isolated as previously described (; ). Concentrations of membrane proteins were measured using the Bradford method.
Western Blot
Anti-YFP antibody (catalog 66002-1-lg; Proteintech) (1:2,000) and anti–14-3-3 antibody (catalog AS12 2119; Agrisera) (1:2,000) were used to detect YFP and 14-3-3 proteins of membrane fractions. Polyvinylidene fluoride (PVDF) membrane (catalog 162-1077; Bio-Rad) was cut to fit the SDS-PAGE. The PVDF membrane was steeped in 100% methanol for 5 min. After composing the transfer sandwich cassette, transferring time was set for 1.5 h and current for 400 mA. Then 1× PBST buffer with 5% milk (Anchor, Taiwan) was used to blocking the PVDF membrane for 30 min. After blocking, the primary antibody was added to 10 mL 1× PBST with 5% milk (dilute 2,000 times) shaking overnight at 4°C. Then the membrane was washed by 1× PBST with 5% milk for three times. Secondary antibody was added to 10 mL 1× PBST with 5% milk (dilute 5,000 times) shaking 1.5 h at room temperature. Then the membrane was washed by 1× PBST with 5% milk for three times. Then 1× PBST without 5% milk was used to wash 5 min twice. The ECL reagents (Enhanced Luminol Reagent Plus, lot 275-081201; Oxidizing Reagent Plus, lot 265-081201; Blossom) was mixed 500 µL (1:1) well. The ECL mixed reagents were added into the membrane and detected by Luminescent image system (Wealtec KETAC, USA).
Statistical Analyses
Each experiment was repeated at least three times. Values are expressed as the mean ± standard deviation in gene expression analysis and phenotypic analyses. Statistical analysis was carried out using Student t test and one-way analysis of variance (ANOVA) with post hoc Tukey honestly significant difference test.
Results
Ser-860 of GLR3.7 Is Phosphorylated by AtCDPKs In Vitro
The fusion peptide containing the fragment of GLR3.7 P0 (RYRRMERTSSMPRA) was labeled by γ-32P in the autoradiogram (Figure 1). The results indicated that the GLR3.7 fusion peptide could be phosphorylated by recombinant G-CDPK16-6His (Figure 1A), G-CDPK34-6His (Figure 1B) and G-CDPK3-6His (Figure 1C) in vitro, individually. The kinase assay results indicated Ser-860 of AtGLR3.7 in the P1 fusion peptide as the phosphorylation site. The inactive kinase G-CDPK16-6His was introduced, and almost no phosphorylation of GLR3.7 P0 was detected, confirming that the phosphorylation of GLR3.7 P0 was due to CDPK16 activity (Supplementary Figure S1). In conclusion, Ser-860 of AtGLR3.7 was phosphorylated by CDPK3, CDPK16, and CDPK34 in vitro.
Figure 1
Figure 2
Protein–Protein Interaction Between GLR3.7 and 14-3-3ω Was Confirmed Using BiFC
Our results indicated that GLR3.7 could physically interact with 14-3-3ω in the plasma membrane based on the results of the transient expression assay on Arabidopsis leaf protoplasts. In addition, using A. tumefaciens, we transiently expressed GLR3.7 in tobacco (N. benthamiana) epidermal cells and detected protein–protein interaction between GLR3.7 and 14-3-3ω by observing yellow fluorescent signals on the plasma membrane (Figure 3). AHA2 is a used as a positive control of 14-3-3 binding (). However, when Ser-860 was mutated to Ala, the yellow fluorescent signal on the plasma membrane disappeared (Figure 3), indicating that Ser-860 of GLR3.7 is the 14-3-3ω binding site.
Figure 3
In Vitro 14-3-3ω Binding Assay Confirmed the Physical Interaction Between 6His-14-3-3ω and GST-GLR3.7
Most 14-3-3ω client interactions are thought to be promoted by phosphorylation of a target-binding site on the client. So far, three 14-3-3ω binding modes have been found: Mode-1 (K/R xx Sp/Tp x P) and Mode-2 (K/R-4-x-3-x-2-x-1-Sp/Tp-x+1-P+2), described by , and Mode-3 (Y-1TpV+1), described by , where x represents any amino acid, and Sp/Tp is the phosphorylated site. Interestingly, the AtGLR3.7 phosphorylation site mapping indicated that Ser-860 fits into the conserved 14-3-3ω Mode-1, according to Scansite software (https://scansite4.mit.edu/4.0/#home) prediction. The Ser-860 of GLR3.7 had been pointed out as a 14-3-3ω binding site (), but it was predicted that it is the site for both CDPK phosphorylation and 14-3-3ω binding.
To further confirm whether Ser-860 of GLR3.7 is a 14-3-3ω binding site, the QCM analysis was carried out in an independent experiment. The recombinant fusion peptide GST-GLR3.7 P0 was coated on the sensor first, and then 6His-14-3-3ω protein was injected into the PBS buffer. If the recombinant peptide GST-GLR3.7 P0 could physically interact with 6His-14-3-3ω, the frequency of the sensor would change. Results showed that GST-GLR3.7 P0 interacted with 6His-14-3-3ω in vitro (Figure 4A), whereas GST-GLR3.7 P1 did not (Figure 4C). The GST vector was used as the negative control (Figure 4D). Our results supported the observation that Ser-860 is a 14-3-3ω binding site.
Figure 4
Quartz Crystal Microbalance data of protein–protein interaction between 6His-14-3-3ω and GST-GLR3.7 were further analyzed by AQUA software, which revealed a Kd value of 1.77 × 10−6 M (Figure 4E). A previous study showed that 14-3-3ω is a scaffold protein that can interact with clients that have already been phosphorylated (). Our results also showed that phosphorylated G-GLR3.7 (Figure 4B) could physically interact with 6His-14-3-3ω in vitro with a Kd as low as 2.31 × 10−9 M (Figure 4F).
Promoter-GUS Assay
A previous study on transgenic plants harboring GUS driven by the AtGLR3.7 native promoter, and examining a variety of different tissues and different stages of development, showed that AtGLR3.7 is expressed in the cells of developing embryos, seedlings, and fully mature plants and flowers (). In the present study, the GUS line driven by the 2-kb AtGLR3.7 promoter displayed GUS activity in radicle, hypocotyl, vascular tissues of leaves, primary roots, and lateral roots (Figures 5A, B).
Figure 5
AtGLR3.7 Is Localized to the Plasma Membrane
The GLR proteins were found to be plasma membrane proteins (). In order to further confirm whether AtGLR3.7 is actually localized to the plasma membrane, transient expression of GLR3.7 protein in N. benthamiana was carried out. The PIP2A-m-cherry was used as a plasma membrane marker (). As expected, the GLR3.7 protein is localized to the plasma membrane based on our transient assay, as its fluorescence signal overlaps with that of PIP2A (Figure 6).
Figure 6
Seed Germination of glr3.7-2 Is More Sensitive to Salt Stress
To study the functions of GLR3.7in planta, two glr3.7 T-DNA insertion mutants, glr3.7-1 and glr3.7-2, were developed with T-DNA insertion sites at introns 1 and 2, respectively (Supplemental Figure S2A). The semiquantitative reverse transcriptase–PCR showed that glr3.7-1 is a knockdown line, whereas glr3.7-2 is a knockout line (Supplemental Figures S2 B, C). In a previous study, a glr3.7 mutation line showed higher germination sensitivity under 150 mM NaCl treatment, by delaying germination time, than the wild type (Col-0) (). In the present study, we tested whether GLR3.7 is involved in seed germination under salt stress. Our results showed that glr3.7-2 mutant strains significantly delayed seed germination at 72 and 84 h under salt stress condition in comparison to Col-0 (Figure 7B), which is consistent with the results from a previous study (). In addition, we also performed phenotyping of cpk16-1 knockout mutant (SALK_020716) under salt stress condition. Treatment condition is the same as above. Results showed that glr3.7-2 mutant strains significantly delayed seed germination at 72, 84, and 96 h under salt stress condition. These suggest that CPK16 and GLR3.7 are truly involved in salt stress response (Supplementary Figures S3A, B).
Figure 7
Primary Root Growth of GLR3.7 Ser-860A Lines Is Less Sensitive to Salt Stress
To test whether GLR3.7 is involved in primary root growth under salt stress, seedlings were grown on half-strength MS medium for 4 days and then moved to half-strength MS medium containing H2O (control) or 125 mM NaCl, in which they were grown vertically for 6 days. Under the 125 mM salt stress condition, the primary root growth of the Ser-860A (Ser-860 point-mutated to Ala) overexpression lines SA 10-2 and SA 15-6 was less sensitive than that of other lines (Figure 8B). Relative primary root length (treatment/control) of SA 10-2 and SA 15-6 was around 60%, which was significantly higher than that of the GLR3.7 overexpression lines OE 5-6 and OE 16-5 and wild type, suggesting that phosphorylation of Ser-860 may affect primary root growth under salt stress.
Figure 8
Increase of Cytosolic Ca2+ Concentration by Salt Stress Is Significantly Lower in the glr3.7-2 Mutant Line
Before the salt stress treatment, no significant increase was detected in the cytosolic Ca2+ concentration (Supplemental Figures S4A–C, Figure 9). However, after salt stress treatment, Col-0 showed a significant increase of the cytosolic Ca2+ concentration, but this increase was significantly lower in the mutant line glr3.7-2 (Figure 9B). This indicated that GLR3.7 is involved in the regulation of cytosolic Ca2+ concentration under salt stress.
Figure 9
Association of 14-3-3 Proteins to the Microsomal Fractions Isolated From Salt-Treated GLR3.7-S860A Overexpression Lines Is Less Than GLR3.7 Overexpression Line
To determine whether association of 14-3-3 proteins to microsomal fractions in SA 10-2 and SA 15-6 is different from OE 5-6 and OE 16-5, microsomal fractions of 150 mM NaCl salt-treated-GLR3.7 overexpression lines, OE 5-6 and OE 16-5, and GLR3.7-S860A overexpression lines, SA 10-2 and SA 15-6, were isolated and subjected to Western blot. Results showed that under salt stress condition, association of 14-3-3 proteins to the microsomal fractions isolated from salt-treated GLR3.7-S860A overexpression lines SA 10-2 and SA 15-6 is less than GLR3.7 overexpression line OE 16-5 (Figure 10). This suggests that the phosphorylation of S860 is affected by salt stress.
Figure 10
Discussion
Calcium, as a second messenger, is a ubiquitous signaling molecule in eukaryotic cells. The cytosolic Ca2+ signals that participate in nearly all aspects of plant growth and development encode information as binary switches or information-rich signatures (). Signaling occurs when the cell is stimulated to release stored Ca2+ or when Ca2+ enters the cell through the ion channels on the plasma membrane. In plants, Ca2+ levels can be regulated by Ca2+-binding proteins that function as Ca2+-signal sensors, which detect Ca2+ alterations by binding with domains such as EF hands (). These Ca2+ sensors include calmodulins, CDPKs, calcineurin B-like proteins (CBLs), and CBL-interacting protein kinases (; ). A previous study showed that a fragment of AtGLR3.7 could be phosphorylated by CDPK in vitro (). Accordingly, in the present study, we found that GST-GLR3.7 can be phosphorylated by recombinant CDPK16, CDPK34, and CDPK3 in vitro (Figure 1). In addition, our results showed that Ser-860 of AtGLR3.7 is a Ca2+-dependent phosphorylation site.
So far, three consensus phosphorylation motifs of CDPKs are known. The first consensus phosphorylation motif is ϕ-5-X-4-Basic-3-X-2-X-1-S, where the underlined S is phosphorylated, X is any residue, and ϕ is a hydrophobic residue (; ; ). The second consensus phosphorylation motif is Basic-9- Basic-8-X-7-Basic-6-ϕ-5-X-4-X-3-X-2-X-1-S-X+1-Basic+2. The third motif is ϕ-3-R-2-ϕ-1-S-ϕ+1-x- K+3-R+4 (). In the present study, the Ser-860 of AtGLR3.7 was phosphorylated according to the first CDPK phosphorylation motif. The phosphorylation site of GLR3.7 was not reported before, and it appears to be novel. In Arabidopsis, mutation of CPK3 was found to affect seed germination rate under salt stress condition (). cpk3 mutants exhibited salt-sensitive phenotype. In our study, cpk16-1 knockout mutant lines showed salt stress-related phenotypes (Supplementary Figure S3B). Since GLR3.7 Ser-860A overexpression lines is less sensitive to salt stress in terms of primary root growth, the phosphorylation of AtGLR3.7 by CDPKs may be important in salt stress responses. However, whether AtGLR3.7 is a CDPK substrate, and Ser-860 is the phosphorylation site in vivo is critical. We have tried using membrane shaving followed by mass spectrometry analyses as previously described (), but did not detect phosphorylation site of AtGLR3.7 probably due to limitation of the technique. This requires further studies.
It has been reported that AtGLR3.7 may be a client of At14-3-3ω (). The 14-3-3ω proteins are scaffold proteins that can interact with a phosphorylated protein and change the target protein activity (). In animals, the activity of NMDA can be regulated by 14-3-3ω (). The binding of 14-3-3ω proteins causes changes in client conformation, activity, localization, and association within larger protein complexes (). However, there was no report on the interaction between At14-3-3ω and AtGLR3.7 in Arabidopsis, which was confirmed in the present study (Figure 2). We also found that CDPK phosphorylation and 14-3-3ω binding sites are overlapped, which is in agreement with CDPKs mediating 14-3-3ω binding in plants. For example, Nicotiana tabacum CDPK1 phosphorylation at Ser-114 represses shoot growth and promotes 14-3-3ω binding (). In fact, 14-3-3 proteins were found to be associated with membrane proteins (). For example, 14-3-3 proteins bind the C-terminus phosphorylated Tyr residue of the plasma membrane H+–ATPase (; ; ). In addition, 14-3-3 proteins bind to potassium channel KAT1 in plants (). In the present study, we found 14-3-3 association is less in AtGLR3.7 Ser-860A overexpression lines than GLR3.7 overexpression line under salt stress condition. This might indirectly explain the importance of AtGLR3.7 Ser-860 phosphorylation in 14-3-3 binding under salt stress condition.
Evidence is emerging for the NSCC function of AtGLR. The research about ion channel activity of glutamate receptors is still limited in planta. Arabidopsis plants overexpressing AtGLR3.2 under the control of the 35S promoter showed symptoms of Ca2+ deficiency and hypersensitivity to potassium (K+) and sodium (Na+) ion concentrations (). Antisense AtGLR1.1 plants did not show hypersensitivity to K+ and Na+ compared with wild-type plants, but high levels of Ca2+ led to higher inhibition of their root growth (). In Arabidopsis seedlings, AtGLR1.4 has been shown to function as a nonselective Ca2+-permeable cation channel and to mediate methionine-induced depolarization (). Altogether, these findings suggest that plant GLRs function in Ca2+ and monovalent cation transport and may form constitutively active ion channels. In Xenopus species oocytes, AtGLR3.7 has been successfully expressed and appears to function as a constitutively active channel catalyzing the voltage-independent movement of Na+, K+, and Ca2+ across the plasma membrane (). Although we detected a lower increase of cytosolic Ca2+ concentration under salt stress (Figure 9) in glr3.7 mutants than in Col-0, we did not assay channel activity changes for GLR3.7, which requires further study in the future.
In rat cerebellar granule cells, 14-3-3ω can interact with NMDA receptors and supports neuronal survival (). Addition of 14-3-3ω proteins strongly increased the thiamin pyrophosphokinase 1 activity in a dose-dependent manner in Arabidopsis (). Moreover, 14-3-3ω proteins are found to be involved in primary root growth regulation under abiotic stress conditions (). The quadruple mutant lines of Arabidopsis 14-3-3ω isoforms exhibited altered primary root growth under salt and mannitol treatments (). It was found that 14-3-3ωs play a positive role in primary root growth under normal condition, but a negative role under abiotic stresses (). In the present study, we found that the Ser-860 of GLR3.7 is a 14-3-3ω binding site. Mutation of this site to Ala affects primary root growth under salt stress. It is possible that the binding of 14-3-3ω inhibited primary root length under salt stress, thereby supporting the findings of . However, whether binding of 14-3-3ω affects the activity of AtGLR3.7 in Arabidopsis and whether AtGLR3.7 channel activity affects Ca2+ transport to regulate root growth requires further studies.
Glutamate receptors have been reported to be involved in seed germination in plants. In Arabidopsis, mutation of GLR3.4 led to more sensitivity to ABA and affected seed germination (). Repression of GLR3.5 led to higher sensitivity to ABA and delayed seed germination, whereas overexpression of GLR3.5 led to reduced sensitivity to ABA and earlier seed germination (). Our results showed that GLR3.7 could also be involved in the regulation of seed germination (Figure 7), although this might be ABA-dependent or not. In glr3.4 mutants, cytosolic Ca2+ concentration increased less than in wild-type seedlings under salt stress (Figure 9), consistent with that previously reported by .
Glutamate receptors were found to be involved in root growth and development. In Arabidopsis, GLR3.6 regulates primary and lateral root development through regulating the cell cycle control gene KRP4, a Kip-related protein (), and GLR3.2 and GLR3.4 may form a protein complex that regulates lateral root initiation (). In rice, mutation of GLR3.1 led to short-root phenotype (). However, these effects were found under normal conditions. In the present study, we observed changes in the root phenotype of the GLR3.7 (S-860A) overexpression line under salt stress (Figure 8). Because GLR3.7 diverged evolutionarily from other Clade III members (), it might have specialized in regulating primary root growth under abiotic stress conditions.
Funding
The present study was supported by the Ministry of Education, Taiwan, through the National Taiwan University, Taiwan (grants 107L893106, and 108L893106) and by the Ministry of Science and Technology, Taiwan (grants MOST #104-2311-B-002-034, 104-2311-B-002-005, 105-2313-B-002-006, 106-2313-B-002-014, 107-2313-B-002-002, 108-2311-B-002-002, and 108-2313-B-002-048), through the funds attributed to I-FC.
Statements
Data availability statement
All datasets for this study are included in the manuscript/Supplementary Files.
Author contributions
P-HW conducted the kinase assay and QCM analysis. C-EL performed BiFC analysis, subcellular localization analysis, AEQ luminescence assay, and phenotyping of mutant lines. Y-SL isolated T-DNA insertion lines and generated AEQ cross lines. M-HL isolated membrane fractions for Western blot. P-YC conducted phenotyping of cpk16 mutant lines. H-CC participated in the kinase assay. I-FC led the whole project including experimental designs.
Acknowledgments
We thank Jeffrey Harper and John Cushman (University of Nevada, Reno, NV, USA) for providing the GST-CDPK3-6His plasmids and Jeffrey Harper for providing the glr3.7 seeds. We also thank Technology Commons, College of Life Science, National Taiwan University, and Technology Commons of Life Science and Precision Instrumentation Center, sponsored by National Science Council, National Taiwan University, for technical support. Many thanks for English proofreading and editing by Editage.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fpls.2019.01169/full#supplementary-material
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Summary
Keywords
Arabidopsis, glutamate receptor, kinase, phosphorylation, 14-3-3, root, salt, calcium
Citation
Wang P-H, Lee C-E, Lin Y-S, Lee M-H, Chen P-Y, Chang H-C and Chang I-F (2019) The Glutamate Receptor-Like Protein GLR3.7 Interacts With 14-3-3ω and Participates in Salt Stress Response in Arabidopsis thaliana. Front. Plant Sci. 10:1169. doi: 10.3389/fpls.2019.01169
Received
23 April 2019
Accepted
27 August 2019
Published
30 September 2019
Volume
10 - 2019
Edited by
Jayakumar Bose, University of Adelaide, Australia
Reviewed by
Anja Thoe Fuglsang, University of Copenhagen, Denmark; Norbert Mehlmer, Technical University of Munich, Germany
Updates
Copyright
© 2019 Wang, Lee, Lin, Lee, Chen, Chang and Chang.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Ing-Feng Chang, ifchang@ntu.edu.tw
†These authors have contributed equally to this work
This article was submitted to Plant Traffic and Transport, a section of the journal Frontiers in Plant Science
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