Frontiers in Plant Science | Functional and Applied Plant Genomics

Editorial

Published on 27 Jun 2025

Editorial: Genetic resources and conservation strategies for neotropical plant biodiversity

in Functional and Applied Plant Genomics

Enéas Ricardo Konzen
Miklos Maximiliano Bajay
Jorge Carlos Berny Mier y Teran
Marcos Vinícius Bohrer Monteiro Siqueira

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629546

321 views

Original Research

Accepted on 26 Jun 2025

SaGP: identifying plant saline-alkali tolerance genes based on machine learning techniques

in Functional and Applied Plant Genomics

Baixue Qiao
Wentao Gao
Xudong Zhang
Min Du
Xuanrui Liu
Shaozi Pang
Chunxue Yang
Jiang Wang
Yuming Zhao
Linan Xie

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629794

Original Research

Accepted on 26 Jun 2025

Gh_FBL43 regulates the resistance of Gossypium hirsutum to Verticillium wilt through jasmonic acid and flavonoid-related pathways

in Functional and Applied Plant Genomics

Jieyin Zhao
Xuening Su
GAO Wenju
Tingwei Wang
Yuxiang Wang
Quanjia Chen
Yanying Qu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1620947

Original Research

Published on 25 Jun 2025

Improving Soybean Seed Sucrose Content using TILLING by Sequencing Analyses of The Soybean Sucrose Synthase Gene Family

in Functional and Applied Plant Genomics

Dounya Knizia
Erdem Anil
Yasser Salhi
Haiying Shi
Abdelhalim El Baze
My Abdelmajid Kassem
Naoufal Lakhssassi
Henry T. Nguyen
Khalid Meksem

Frontiers in Plant Science

doi 10.3389/fpls.2025.1606321

465 views

Original Research

Published on 25 Jun 2025

Identification of DNA N6-methyladenine modifications in the rice genome with a fine-tuned large language model

in Functional and Applied Plant Genomics

Yichi Zhang
Hao Chen
Shicheng Xiang
Zhibin Lv

Frontiers in Plant Science

doi 10.3389/fpls.2025.1626539

263 views

Original Research

Accepted on 23 Jun 2025

Conservation and Valorization of Italian Potato Biodiversity Through Genotype-By-Sequencing (GBS)

in Functional and Applied Plant Genomics

Matteo Martina
Roberto Natale
Edoardo Vergnano
Anna Milani
Stefano Biricolti
Luisa Andrenelli
Ezio Portis

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629306

127 views

Original Research

Published on 20 Jun 2025

Screening and identification of grain sorghum germplasm for salt tolerance at seedling stage

in Functional and Applied Plant Genomics

Yu Wang
Dongyang Li
Chunjuan Liu
Xiaolong Shi
Yan Huang
Chang Liu
Yufei Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2025.1610685

400 views

Data Report

Published on 20 Jun 2025

Whole genome sequencing of Neolamarckia macrophylla (Roxb.) Bosser and Neolamarckia cadamba (Roxb.) Bosser from Indonesia: a vital resource for completing chloroplast genomes and mining microsatellite markers

in Functional and Applied Plant Genomics

Fifi Gus Dwiyanti
Irsyad Kamal
Rahadian Pratama
Dhika Syaputra
Evayusvita Rustam
Ratna Uli Damayanti
Iskandar Z. Siregar
Dede J. Sudrajat

Frontiers in Plant Science

doi 10.3389/fpls.2025.1608577

361 views

Original Research

Accepted on 19 Jun 2025

Genome-wide identification, characterization, and expression analysis of the SOS1 gene family in the medicinal plant Paeonia ostii under salt stress

in Functional and Applied Plant Genomics

Yahong Chen
Huabing Liang
Zhanchang Wang
Quaid Hussain
Xuexiong Zhang
Fazhi Chen
Xiaohua Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1614011

352 views

Original Research

Published on 19 Jun 2025

Genome-wide identification, transcriptional profiling, and miRNA-binding site analysis of the LBD gene family in the camphor tree

in Functional and Applied Plant Genomics

Jiaqi Zhang
Luyang Shan
Haoran Qi
Caihui Chen
Yongda Zhong
Meng Xu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1591736

331 views

Original Research

Accepted on 18 Jun 2025

Integrated transcriptome, GWAS and metabolome revealed the mechanism of seed germination in sorghum

in Functional and Applied Plant Genomics

Lan Ju
Ruizhen Liu
Xiaoqiang Cheng
Yao Wang
Xin Lv
Jianqiang Chu
Hao Niu
Haisheng Yan
Yubin Wang
Fangfang Fan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1601899

190 views

Original Research

Accepted on 18 Jun 2025

Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species

in Functional and Applied Plant Genomics

Rongxin Li
Bo Wang
Suqin Xiao
Ling Chen
Fuyou Yin
Jinlu Li
Cong Jiang
Dunyu Zhang
Qiaofang Zhong
Yun Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1555104

117 views

Original Research

Accepted on 16 Jun 2025

Unraveling yield heterosis in Chinese cabbage hybrid by comparative transcriptomic analysis and LHCB1 gene function analysis

in Functional and Applied Plant Genomics

Ruihua Wang
Min Han
Taili Han
Ligong Xu
Yuanyuan Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1627259

161 views

Original Research

Published on 13 Jun 2025

Genome-wide identification and characterization of soybean GH9 endo-1,4-β-glucanases

in Functional and Applied Plant Genomics

Weimin Zhan
Huijuan Huang
Zaipan Cai
Zhenwei Zhao
Xuefu Lin
Yize Peng
Zhicheng Dong
Di Qin
Li Jiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1597668

540 views

Original Research

Published on 13 Jun 2025

Complete sequencing of the mitochondrial genome of tea plant Camellia sinensis cv. ‘Baihaozao’: multichromosomal structure, phylogenetic relationships, and adaptive evolutionary analysis

in Functional and Applied Plant Genomics

Zhiyin Chen
Zixu Wang
Wei Zhou
Sijie Liu
Yuxin Xiao
Yihui Gong

Frontiers in Plant Science

doi 10.3389/fpls.2025.1604404

448 views

Original Research

Accepted on 12 Jun 2025

Gene flow from weedy rice to T1c-19 transgenic rice stacked with cry1C*/bar genes and fitness of F1 hybrids

in Functional and Applied Plant Genomics

Guang-Le Xie
Jia-Qi Shen
Min Wang
Ji-Kun Li
Yao Huang
Sheng Qiang
Xiaoling Song
Wei-Min Dai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1513367

210 views