Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 26 Sep 2025

Identification and evolutionary analysis of NAC transcription factors in Eriobotrya japonica: implications for sugar-acid regulatory networks during fruit development

in Functional and Applied Plant Genomics

Huiling Zhang
Meng Yang
Chengyang Ye
Minghui Chen
Hailing Gu
Xiurun Fan
Chencong Yang
Junwei Chen
Kai Xu
Boping Wu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1671017

500 views

Original Research

Accepted on 25 Sep 2025

Genome-wide identification of GH17 family genes and their expression patterns associated with bud dormancy-regrowth regulation in Prunus persica

in Functional and Applied Plant Genomics

Xuehui Zhao
Haifeng Xie
Yifei Han
Jiaqi Zhang
Yihua Qi
Zejie Zhang
Maoxiang Sun
Meiying Liu
Fen Wang
Qingjie Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1693135

Original Research

Published on 25 Sep 2025

Comparative analysis of the NLR gene family in the genomes of garden asparagus (Asparagus officinalis) and its wild relatives

in Functional and Applied Plant Genomics

Li-Ping Sun
Wen-Zhuo Zhai
Rui-Yan Song
Hao-Han Ning
Shu-Fen Li
Wu-Jun Gao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1681919

813 views

Data Report

Published on 25 Sep 2025

Chromosome-level assembly of the Glechoma longituba genome

in Functional and Applied Plant Genomics

Yubang Gao
ChenQi Zhao
Dongdong Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1597825

467 views

Review

Accepted on 23 Sep 2025

Research progress on the synergistic regulation of MYB transcription factor-mediated developmental plasticity and stress responses in rice

in Functional and Applied Plant Genomics

Wenyan Peng
Yi Zhang
Hongjun Xie
Yinghong Yu
Mingdong Zhu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1668800

401 views

Technology and Code

Accepted on 23 Sep 2025

Optimizing Fitness: Plastic Flowering Time in Variable Environments

in Functional and Applied Plant Genomics

Wei Dong
Yalin Zhang
Yue Xing
Kexin Chang
Nianwei Qiu
Yuguang Song

Frontiers in Plant Science

doi 10.3389/fpls.2025.1690015

408 views

Original Research

Accepted on 23 Sep 2025

Yield and yield component trait analysis with DArT genotyping for GWAS in soybean grown in drought conditions of Kazakhstan

in Functional and Applied Plant Genomics

Aigul Amangeldiyeva
Raushan Yerzhebayeva
Shynar Mazkirat
Svetlana Didorenko
Sholpan Bastaubayeva
Bekzhan Maikotov
Rinat Kassenov
Assel Jenisbayeva
Yuri Shavrukov

Frontiers in Plant Science

doi 10.3389/fpls.2025.1674201

278 views

Original Research

Accepted on 22 Sep 2025

Prediction of harvest-related traits in barley using high-throughput phenotyping data and machine learning

in Functional and Applied Plant Genomics

Hans Tietze
Lamis Abdelhakim
Barbora Pleskačová
Ayelet Kurtz-Sohn
Eyal Fridman
Zoran Nikoloski
Klara Panzarova

Frontiers in Plant Science

doi 10.3389/fpls.2025.1686506

381 views

Opinion

Accepted on 19 Sep 2025

Decoding the Mystery: AI-Assisted Bioinformatics and Functional Genomics Technologies in Medicinal Plants

in Functional and Applied Plant Genomics

Cheng Song
Irfan Ali Sabir
Wanli Zhao
Yunpeng Cao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1678483

1,332 views

Original Research

Published on 19 Sep 2025

Comparative assessment of species identification methods for European Salicornia sources: a multifaceted approach employing morphology, nuclear DNA content, phylogenetic markers, RNA topology, and SSR fingerprinting

in Functional and Applied Plant Genomics

Andre Fussy
Samuele Austoni
Traud Winkelmann
Jutta Papenbrock

Frontiers in Plant Science

doi 10.3389/fpls.2025.1666009

852 views

Original Research

Published on 19 Sep 2025

Genome-wide identification and expression analysis of CCoAOMT genes in Capsicum annuum L. under drought stress

in Functional and Applied Plant Genomics

Di Wu
Chen Lu
Liwei Bai
Xi Yan
Wei Lai
Xiaoming Zhang
Lei He
Jianwen He

Frontiers in Plant Science

doi 10.3389/fpls.2025.1654390

970 views

Original Research

Accepted on 18 Sep 2025

Re-calibration of flow cytometry standards for plant genome size estimation

in Functional and Applied Plant Genomics

Abhishek Soni
Robert Henry

Frontiers in Plant Science

doi 10.3389/fpls.2025.1548766

716 views

Original Research

Published on 18 Sep 2025

Transcriptome analysis of rice resistant and susceptible near-isogenic lines in response to infection by Xanthomonas oryzae pv. oryzicola

in Functional and Applied Plant Genomics

Hui Zhang
Min Tang
Yao Wan
Ziqiu Deng
Xuemei Qin
Jieyi Huang
Xuan Wei
Rongbai Li
Fang Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1610315

1,110 views

Data Report

Published on 12 Sep 2025

Sequencing and characterizing the complete chloroplast genome of Ardisia silvestris Pit., a potential medicinal plant in Asia

in Functional and Applied Plant Genomics

Nhat Nam Nguyen
Hoang Dang Khoa Do

Frontiers in Plant Science

doi 10.3389/fpls.2025.1627578

1,790 views

Original Research

Accepted on 11 Sep 2025

Comparative Analysis of Chloroplast Genomes in Carica Species Reveals Evolutionary Relationships of Papaya and the Development of Efficient Molecular Markers

in Functional and Applied Plant Genomics

Yajin Chen
Xiaoxi Du
Lei Pan
Qiyuan Huang
Zhigang Hao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1686914

1,111 views

Original Research

Accepted on 11 Sep 2025

Genome-wide association study and genome prediction of tallness trait in spinach tallness phenotyping

in Functional and Applied Plant Genomics

Ibtisam Alatawi
Haizheng Xiong
Hanan Alkabkabi
KENANI CHIWINA
Beiquan Mou
Qun Luo
Yuejun Qu
Renjie Du
Awais Riaz
Derrick J Harrison

Frontiers in Plant Science

doi 10.3389/fpls.2025.1654904

955 views