Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Accepted on 06 Nov 2025

Genome-wide analysis of the CrRLK1L gene family in Puccinellia tenuiflora and functional study of PutFER1 in Arabidopsis underpinning salt tolerance

in Functional and Applied Plant Genomics

Gaojian Li
Yulin Peng
Yanshuang Liu
Zhen Wu
Shaojun Dai
Zhi Qin
Meihong Sun

Frontiers in Plant Science

Original Research

Published on 05 Nov 2025

Integrated RNA-seq and snRNA-seq analysis identifies PR10 tandem gene cluster governing early defense against Fusarium wilt in sea island cotton

in Functional and Applied Plant Genomics

Baojun Liu
Shu Wang
Yujia Zhang
Gang Liu
Ziyi Liu
Aixing Gu
Jianyu Bai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1622223

544 views

Systematic Review

Accepted on 31 Oct 2025

Research Evolution of Flat Peach (Prunus persica (L.) Batsch): A Decadal Bibliometric Analysis

in Functional and Applied Plant Genomics

Abebe Misganaw Gedamu
Yong Li
Jinlong Wu
Ke cao
Muhammad Anees
Wang Zhaohui
Liu Sung
Xing Hongyang
Wei Pengcheng
Muhammed Jehangir

Frontiers in Plant Science

Original Research

Accepted on 31 Oct 2025

Conserved regions upstream of BRC1B regulate bud dormancy in tomato

in Functional and Applied Plant Genomics

Gül Hatinoğlu
Froukje Van der Wal
Gerco Angenent
Ruud A de Maagd
Richard G.H. Immink

Frontiers in Plant Science

106 views

Original Research

Accepted on 31 Oct 2025

MTMixG-Net: Mixture of Transformer and Mamba network with a dual-path gating mechanism for plant gene expression prediction

in Functional and Applied Plant Genomics

Fei Guo
Wenjuan Li
Aihong Lu
Rongzhen Feng
Wu Fang

Frontiers in Plant Science

Original Research

Accepted on 31 Oct 2025

MicroRNA identification and expression analysis of wheat thermo-sensitive male sterility line BNS366 for fertility transformation

in Functional and Applied Plant Genomics

Junpeng Chen
Xue Hu
Ruilian Song
Genlou Sun
Sisi Huang
Daorong Zhang
Xifeng Ren

Frontiers in Plant Science

Original Research

Published on 31 Oct 2025

Differential gene expression and phenotypic variation across tissues between Saccharum officinarum and Saccharum spontaneum

in Functional and Applied Plant Genomics

Qin-Nan Wang
Sheng-Ren Sun
Jun-Lv Chen
Jing-Ru Zhou
Yuan-Xia Qin
Wei Zhang
Li-Yu Chen
San-Ji Gao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1696921

568 views

Original Research

Published on 31 Oct 2025

Comprehensive identification, characterization, and expression analysis of m6A methylation transferase gene family in maize (Zea mays L.)

in Functional and Applied Plant Genomics

Chunlei Li
Ming He
Xinyi Liu
Qingxue Lv
Xiaoming Yu
Xiaoxue Fan
Xia Bai
Jie Cong
Chuanbo Sun

Frontiers in Plant Science

doi 10.3389/fpls.2025.1673408

579 views

Original Research

Accepted on 30 Oct 2025

Genome-Wide Identification and Characterization of ALOG Domain Genes in Rosa

in Functional and Applied Plant Genomics

Feng Chen
Bo Lv
Jiaqi Guo
Jurong Song
Cong Guo
Jie Yang
Jianguo Lin
Fayun Xiang

Frontiers in Plant Science

Original Research

Accepted on 29 Oct 2025

A Novel NAC Transcription Factor Mediates Negative Regulation of Early Ethylene Production and Ripening in Tomato Fruits

in Functional and Applied Plant Genomics

JIAWEI LI
JUNWEN HAN
TONG LI
DAOYUN CHEN
Kenji Miura
Lazaro E. P. Peres
Hiroshi Ezura
Ning WANG

Frontiers in Plant Science

112 views

Original Research

Accepted on 29 Oct 2025

Integrating Machine Learning and GGE Biplot for Identification of Climate-Suitable Grasspea Genotypes

in Functional and Applied Plant Genomics

Surendra Barpete
Arpita Das
Mangal Parikh
Sonika Yumnam
MUHAMMAD AASIM
Seyid Amjad Ali
Akanksha Singh
Ashutosh Kumar Yadav
Narayana Bhat Devate
Smita Kaul

Frontiers in Plant Science

Original Research

Accepted on 29 Oct 2025

BrSQE1 and the ethylene signaling pathway suppress cell division to regulate plant size in Chinese cabbage (Brassica rapa subsp. pekinensis)

in Functional and Applied Plant Genomics

Rui Yang
Qianyun Wang
Yuhong Ren
Yongcheng Li
Jiajie Wang
Daling Feng
Wei Ma
Na Li
Lei Yang
Jianjun Zhao

Frontiers in Plant Science

Original Research

Accepted on 29 Oct 2025

Multilayered Defense Responses in Sugarcane Against Pratylenchus zeae Revealed by Comparative Transcriptomics

in Functional and Applied Plant Genomics

Pedro Confort
Tiarla Graciane Souto
Jonathan Macedo
Silvana Creste
Claudia Barros Monteiro Vitorello

Frontiers in Plant Science

Opinion

Accepted on 29 Oct 2025

Rethinking De Novo Genes in Plants: Mechanisms, Methodological Progress, and Future Prospects

in Functional and Applied Plant Genomics

Man Luo
Haibo Wu
Dinghua Zhan
Guangcai Chen
Yunpeng Cao

Frontiers in Plant Science

265 views

Original Research

Accepted on 28 Oct 2025

Comparing four heat-inducible promoters in stably transformed sugarcane regarding spatial and temporal control of transgene expression reveals candidates to drive stem preferred transgene expression

in Functional and Applied Plant Genomics

Moni Qiande
Fredy Altpeter

Frontiers in Plant Science

218 views

Original Research

Accepted on 27 Oct 2025

Pan-Genomic Insights into LTP Gene Family Evolution across Diploid Cotton Species

in Functional and Applied Plant Genomics

Yanghan Lu
Lishuang Guo
Zhengya Wei
Yujun Li
Yue Zhang
Juyun Zheng
Baohua Wang
Zhonghua Zhou
Haodong Chen

Frontiers in Plant Science

167 views