Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 15 Oct 2024

Genome-wide association mapping identifies novel SNPs for root nodulation and agronomic traits in chickpea

in Functional and Applied Plant Genomics

B. S. Chandana
Rohit Kumar Mahto
Rajesh Kumar Singh
Aditi Bhandari
Gitanjali Tandon
K. K. Singh
Sunita Kushwah
Gera Roopa Lavanya
Mir Asif Iquebal
Neelu Jain

Frontiers in Plant Science

doi 10.3389/fpls.2024.1395938

3,767 views
2 citations

Opinion

Published on 15 Oct 2024

Strategies for RNA m6A modification application in crop improvement

in Functional and Applied Plant Genomics

Jun Tang
Xuemin Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1477240

2,145 views
4 citations

Original Research

Published on 10 Oct 2024

Gene expression signatures of mutualism and pathogenesis in flax roots

in Functional and Applied Plant Genomics

Isadora Louise Alves da Costa Ribeiro Quintans
Eric Vukicevich
Vasilis Kokkoris
Erica Packard
Dinesh Adhikary
Miranda M. Hart
Michael K. Deyholos

Frontiers in Plant Science

doi 10.3389/fpls.2024.1415082

1,985 views

Original Research

Published on 10 Oct 2024

Combined transcriptome and metabolome analysis revealed the molecular mechanisms of fruit skin coloration in pink strawberry

in Functional and Applied Plant Genomics

Wenfei Xiao
Aichun Liu
Wenguo Lai
Jianrong Wang
Xiaoyuan Li
Yan Zha
Bo Zhao
Xiaoyang Chen
Hong Yu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1486892

3,023 views
6 citations

Original Research

Published on 10 Oct 2024

Genome-wide analysis of WRKY gene family and the dynamic responses of key WRKY genes involved in cadmium stress in Brassica juncea

in Functional and Applied Plant Genomics

Shaocui Li
Qingqing Ji
Xia An
Changli Chen
Xiahong Luo
Tingting Liu
Lina Zou

Frontiers in Plant Science

doi 10.3389/fpls.2024.1465905

3,517 views
2 citations

Original Research

Published on 07 Oct 2024

UV-induced reactive oxygen species and transcriptional control of 3-deoxyanthocyanidin biosynthesis in black sorghum pericarp

in Functional and Applied Plant Genomics

Brooklyn Schumaker
Lauren Mortensen
Robert R. Klein
Sabyasachi Mandal
Linda Dykes
Nicholas Gladman
William L. Rooney
Byron Burson
Patricia E. Klein

Frontiers in Plant Science

doi 10.3389/fpls.2024.1451215

3,364 views
5 citations

Original Research

Published on 03 Oct 2024

The OsGAPC3 mutation significantly affects grain quality traits and improves the nutritional quality of rice

in Functional and Applied Plant Genomics

Bo Peng
Yan Liu
Xiaoyu Sun
Qiang Zhao
Jing Qiu
Xiayu Tian
Jing Peng
Zhiguo Zhang
Yujian Wang
Yaqin Huang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1470316

2,426 views
4 citations

Original Research

Published on 02 Oct 2024

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies

in Functional and Applied Plant Genomics

Marcel O. Berkner
Yong Jiang
Jochen C. Reif
Albert W. Schulthess

Frontiers in Plant Science

doi 10.3389/fpls.2024.1451749

2,141 views
6 citations

Original Research

Published on 01 Oct 2024

A comprehensive multivariate approach for GxE interaction analysis in early maturing rice varieties

in Functional and Applied Plant Genomics

Muhammad Fuad Anshori
Yunus Musa
Muh Farid
Muh Jayadi
Rusnadi Padjung
Kaimuddin Kaimuddin
Yi Cheng Huang
Madonna Casimero
Iris Bogayong
Willy Bayuardi Suwarno

Frontiers in Plant Science

doi 10.3389/fpls.2024.1462981

3,799 views
9 citations

Original Research

Published on 01 Oct 2024

Genome-wide association study reveals the genetic basis of rice resistance to three herbicides

in Functional and Applied Plant Genomics

Peizhou Xu
Yuhe Qin
Maosen Ma
Tengfei Liu
Fenhua Ruan
Le Xue
Jiying Cao
Guizong Xiao
Yun Chen
Hongyan Fu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1476829

3,034 views
2 citations

Original Research

Published on 27 Sep 2024

Identification of candidate genes and development of KASP markers for soybean shade-tolerance using GWAS

in Functional and Applied Plant Genomics

Qianru Jia
Shengyan Hu
Xihuan Li
Libin Wei
Qiong Wang
Wei Zhang
Hongmei Zhang
Xiaoqing Liu
Xin Chen
Xuejun Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1479536

2,905 views
4 citations

Original Research

Published on 26 Sep 2024

Comprehensive transcriptome analysis of AP2/ERFs in Osmanthus fragrans reveals the role of OfERF017-mediated organic acid metabolism pathway in flower senescence

in Functional and Applied Plant Genomics

Jing-Jing Zou
Jun Zhang
Xiaoqian Wang
Hui Xia
Xiangling Zeng
Xuan Cai
Jie Yang
Jin Zeng
Zeqing Li
Guifu Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1467232

2,240 views
4 citations

Original Research

Published on 26 Sep 2024

Genome-wide identification and tissue expression pattern analysis of TPS gene family in soybean (Glycine max)

in Functional and Applied Plant Genomics

Huanli Li
Xiaoling Zhang
Qinli Yang
Xiaoxia Shangguan
Yanbin Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1487092

3,328 views

Original Research

Published on 17 Sep 2024

Overexpression of the Liriodendron tulipifera TPS32 gene in tobacco enhances terpenoid compounds synthesis

in Functional and Applied Plant Genomics

Junpeng Wu
Manli Bu
Yaxian Zong
Zhonghua Tu
Yanli Cheng
Huogen Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1445103

2,368 views

Original Research

Published on 13 Sep 2024

Genome wide association study reveals new genes for resistance to striped stem borer in rice (Oryza sativa L.)

in Functional and Applied Plant Genomics

Xing Xiang
Shuhua Liu
Yuewen He
Deqiang Li
Andrews Danso Ofori
Abdul Ghani Kandhro
Tengda Zheng
Xiaoqun Yi
Ping Li
Fu Huang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1466857

2,973 views
1 citation

Original Research

Published on 09 Sep 2024

Explainable artificial intelligence for genotype-to-phenotype prediction in plant breeding: a case study with a dataset from an almond germplasm collection

in Functional and Applied Plant Genomics

Pierfrancesco Novielli
Donato Romano
Stefano Pavan
Pasquale Losciale
Anna Maria Stellacci
Domenico Diacono
Roberto Bellotti
Sabina Tangaro

Frontiers in Plant Science

doi 10.3389/fpls.2024.1434229

6,237 views
14 citations

Original Research

Published on 09 Sep 2024

Genomic prediction of yield-related traits and genome-based establishment of heterotic pattern in maize hybrid breeding of Southwest China

in Functional and Applied Plant Genomics

Yong Xiang
Chao Xia
Lujiang Li
Rujun Wei
Tingzhao Rong
Hailan Liu
Hai Lan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1441555

5,257 views
11 citations

Original Research

Published on 05 Sep 2024

Genome assembly of Stephania longa provides insight into cepharanthine biosynthesis

in Functional and Applied Plant Genomics

Huiying Shang
Yuan Lu
Lulu Xun
Kun Wang
Bin Li
Yuxuan Liu
Tao Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1414636

2,411 views
3 citations

Original Research

Published on 03 Sep 2024

Genetic mapping and molecular marker development for white flesh color in tomato

in Functional and Applied Plant Genomics

Jie Liu
Xiaoxue Fang
Fangjie Yu
Chengfeng Zhang
Pengfei Fan
Ningdong Wang
Qiao Shao
Ning Gan
Xiaolong Lv
Bo Ouyang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1459013

3,604 views
1 citation

Original Research

Published on 03 Sep 2024

Mitochondrial genome study of Camellia oleifera revealed the tandem conserved gene cluster of nad5–nads in evolution

in Functional and Applied Plant Genomics

Yiyang Gu
Liying Yang
Junqin Zhou
Zhun Xiao
Mengqi Lu
Yanling Zeng
Xiaofeng Tan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1396635

2,117 views
2 citations

Original Research

Published on 03 Sep 2024

Genome-wide analysis of the WOX gene family and function exploration of RhWOX331 in rose (R. ‘The Fairy’)

in Functional and Applied Plant Genomics

Lian Duan
Zhihui Hou
Wuhua Zhang
Shuang Liang
Minge Huangfu
Jinzhu Zhang
Tao Yang
Jie Dong
Daidi Che

Frontiers in Plant Science

doi 10.3389/fpls.2024.1461322

2,967 views
7 citations

Original Research

Published on 30 Aug 2024

Brchli1 mutation induces bright yellow leaves by disrupting magnesium chelatase I subunit function in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

in Functional and Applied Plant Genomics

Chuanhong Liu
Yi Chai
Chong Tan
Fengyan Shi
Yun Zhang
Zhiyong Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1450242

2,228 views
2 citations

Original Research

Published on 29 Aug 2024

Illumina-based transcriptomic analysis of the fast-growing leguminous tree Acacia crassicarpa: functional gene annotation and identification of novel SSR-markers

in Functional and Applied Plant Genomics

Shougo Ishio
Kazutaka Kusunoki
Michiko Nemoto
Tadayoshi Kanao
Takashi Tamura

Frontiers in Plant Science

doi 10.3389/fpls.2024.1339958

2,157 views
2 citations

Original Research

Published on 26 Aug 2024

Genomic analyses of agronomic traits in tea plants and related Camellia species

in Functional and Applied Plant Genomics

Shengchang Duan
Liang Yan
Zongfang Shen
Xuzhen Li
Baozheng Chen
Dawei Li
Hantao Qin
Muditha K. Meegahakumbura
Moses C. Wambulwa
Lianming Gao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1449006

4,124 views
3 citations

623 articles

articles

Genome-wide association mapping identifies novel SNPs for root nodulation and agronomic traits in chickpea

Strategies for RNA m6A modification application in crop improvement

Gene expression signatures of mutualism and pathogenesis in flax roots

Combined transcriptome and metabolome analysis revealed the molecular mechanisms of fruit skin coloration in pink strawberry

Genome-wide analysis of WRKY gene family and the dynamic responses of key WRKY genes involved in cadmium stress in Brassica juncea

UV-induced reactive oxygen species and transcriptional control of 3-deoxyanthocyanidin biosynthesis in black sorghum pericarp

The OsGAPC3 mutation significantly affects grain quality traits and improves the nutritional quality of rice

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies

A comprehensive multivariate approach for GxE interaction analysis in early maturing rice varieties

Genome-wide association study reveals the genetic basis of rice resistance to three herbicides

Identification of candidate genes and development of KASP markers for soybean shade-tolerance using GWAS

Comprehensive transcriptome analysis of AP2/ERFs in Osmanthus fragrans reveals the role of OfERF017-mediated organic acid metabolism pathway in flower senescence

Genome-wide identification and tissue expression pattern analysis of TPS gene family in soybean (Glycine max)

Overexpression of the Liriodendron tulipifera TPS32 gene in tobacco enhances terpenoid compounds synthesis

Genome wide association study reveals new genes for resistance to striped stem borer in rice (Oryza sativa L.)

Explainable artificial intelligence for genotype-to-phenotype prediction in plant breeding: a case study with a dataset from an almond germplasm collection

Genomic prediction of yield-related traits and genome-based establishment of heterotic pattern in maize hybrid breeding of Southwest China

Genome assembly of Stephania longa provides insight into cepharanthine biosynthesis

Genetic mapping and molecular marker development for white flesh color in tomato

Mitochondrial genome study of Camellia oleifera revealed the tandem conserved gene cluster of nad5–nads in evolution

Genome-wide analysis of the WOX gene family and function exploration of RhWOX331 in rose (R. ‘The Fairy’)

Brchli1 mutation induces bright yellow leaves by disrupting magnesium chelatase I subunit function in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

Illumina-based transcriptomic analysis of the fast-growing leguminous tree Acacia crassicarpa: functional gene annotation and identification of novel SSR-markers

Genomic analyses of agronomic traits in tea plants and related Camellia species