Frontiers in Plant Science | Plant Bioinformatics

Original Research

Published on 16 Apr 2025

Characterization of the NAC gene family in ‘Fengdan’ peony (Paeonia ostii) insights into the evolution and expression patterns under abiotic stresses and ABA treatment

in Plant Bioinformatics

Xiangli Yu
Qirui Meng
Hongyan Hou
Qiang Guo
Qingjie Wang
Yuqing Yang
Yanzhao Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1559667

1,551 views
1 citation

Original Research

Published on 15 Apr 2025

Genome-wide identification, phylogenetic investigation and abiotic stress responses analysis of the PP2C gene family in litchi (Litchi chinensis Sonn.)

in Plant Bioinformatics

Jie Yang
Rong Chen
Wei Liu
Chao Fan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1547526

2,901 views
5 citations

Original Research

Published on 03 Apr 2025

A method of rice panicle number counting based on improved CSRNet model

in Plant Bioinformatics

Junyan Zhu
Jiaxing Huang
Yiyuan Wang
Jingyu Wang
Yongxian Wen

Frontiers in Plant Science

doi 10.3389/fpls.2025.1494564

2,565 views

Original Research

Published on 01 Apr 2025

Comparative analysis of HKT genes in Ipomoea pes-caprae unveils conserved Na+/K+ symporter functions within the gene family

in Plant Bioinformatics

Zhonghua Guo
Jin Sun
Xingguang Chen
Hui Li
Sisi Liang
Fengying Liu
Tong Qu
Huaer Wang
Xueli Li
Zitong Ou

Frontiers in Plant Science

doi 10.3389/fpls.2025.1538669

2,242 views
1 citation

Original Research

Published on 27 Mar 2025

Assembly and analysis of the complete mitochondrial genome of Prunus davidiana (Rosaceae)

in Plant Bioinformatics

Yuyan Zhang
Xin Guo
Ruijuan Ma
Mingliang Yu
Jianlan Xu
Zhijun Shen

Frontiers in Plant Science

doi 10.3389/fpls.2025.1558619

2,100 views
1 citation

Original Research

Published on 27 Mar 2025

Characterizing the wheat (Triticum aestivum L.) phosphate transporter gene family and analyzing expression patterns in response to low phosphorus stress during the seedling stage

in Plant Bioinformatics

Meini Song
Pengcheng Li
Lirong Yao
Chengdao Li
Erjing Si
Baochun Li
Yaxiong Meng
Xiaole Ma
Ke Yang
Hong Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1531642

3,010 views
1 citation

Original Research

Published on 27 Mar 2025

Phylogenetic analysis of nine Impatiens species from subgenus Clavicarpa and subgenus Impatiens (Sect. Impatiens and Sect. Racemosae) based on chloroplast genomes

in Plant Bioinformatics

Mengqing Yang
Wenxiang Lan
Jianhui Zhong
Hui Ma
Xi Huang
Meijuan Huang
Haiquan Huang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1541320

2,337 views

Original Research

Published on 24 Mar 2025

De novo assembly and comparative analysis of cherry (Prunus subgenus Cerasus) mitogenomes

in Plant Bioinformatics

Tianya Zhai
Zhuang Zhao
Chenlong Fu
Lizhen Huang
Changci Jiang
Meng Li
Zefu Wang
Xiaoyue Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1568698

1,929 views
2 citations

Original Research

Published on 19 Mar 2025

Genome-wide identification and expression analysis of the ADH gene family in Artemisia annua L. under UV-B stress

in Plant Bioinformatics

Hengyu Pan
Peiqi Shi
Shan Zhong
Xiaoxia Ding
Shengye Bao
Siyu Zhao
Jieting Chen
Chunyan Dai
Danchun Zhang
Xiaohui Qiu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1533225

3,287 views
1 citation

Original Research

Published on 19 Mar 2025

Identification of nuclear factor YA6 genes in sorghum and characterization of their involvement in drought tolerance

in Plant Bioinformatics

GuoJiang Wu
ZhenGuo Wang
Yan Li
PinTing Du
XinYu Liu
Jie Hou
Wei Zhou
YaXing Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2025.1524066

2,617 views
2 citations

Original Research

Published on 14 Mar 2025

Identification of functional pathways and hub genes associated with the heterochronic development of sugarcane axillary buds and sett roots through multi-omics analysis

in Plant Bioinformatics

Jiabao Zheng
Xiaoyu Huang
Yanli Wei
Wenyan Li
Baoshan Chen
Wenlan Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1551783

3,181 views

Original Research

Published on 13 Mar 2025

Genome-wide identification and expression analysis of C3H gene family in melon

in Plant Bioinformatics

Ling Zheng
Haifang Dai
Yuanfang Mu
Jinbo Li
Yanwei Cheng
Jianming Han

Frontiers in Plant Science

doi 10.3389/fpls.2025.1500429

3,104 views
6 citations

Technology and Code

Published on 13 Mar 2025

StatFaRmer: cultivating insights with an advanced R shiny dashboard for digital phenotyping data analysis

in Plant Bioinformatics

Daniil S. Ulyanov
Alana A. Ulyanova
Dmitry Y. Litvinov
Alina A. Kocheshkova
Alexandra Yu. Kroupina
Nadejda M. Syedina
Viktoria S. Voronezhskaya
Andrey V. Vasilyev
Gennady I. Karlov
Mikhail G. Divashuk

Frontiers in Plant Science

doi 10.3389/fpls.2025.1475057

3,550 views
1 citation

Original Research

Published on 11 Mar 2025

The complete mitochondrial genome and phylogenetic analysis of Lotus corniculatus (Fabaceae, Papilionoideae)

in Plant Bioinformatics

Xiaofei Chen
Zinian Wu
Yanting Yang
Qibo Tao
Na Na
Wenya Wan
Chunyu Tian
Wenlong Gong
Zhiyong Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1555595

2,867 views
5 citations

Original Research

Published on 10 Mar 2025

Comprehensive genome-wide analysis of the GmFRIGIDA gene family in soybean: identification, characterization, and expression dynamics

in Plant Bioinformatics

Song Yu
Yuxuan Wang
Wenwen Ren
Yisheng Fang
Leili Wang
Yifei Zhang
Chengyang Song
Xiao Luo

Frontiers in Plant Science

doi 10.3389/fpls.2025.1536866

2,443 views
1 citation

Editorial

Published on 10 Mar 2025

Editorial: Precision exploration of plant germplasm resources: breakthroughs and applications in telomere-to-telomere (T2T) genomics

in Plant Bioinformatics

Longxin Wang
Kai-Hua Jia

Frontiers in Plant Science

doi 10.3389/fpls.2025.1573144

1,833 views

Original Research

Published on 07 Mar 2025

Variation analysis and comparison of leaf and fruit traits of triploid hybrid progeny in jujube

in Plant Bioinformatics

Jiayuan Xuan
Quanhui Ma
Lixin Ge
Fenfen Yan
Jun Yu
Jiurui Wang
Cuiyun Wu
Mengjun Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1553316

2,469 views
1 citation

Original Research

Published on 27 Feb 2025

Comprehensive analysis of the mitochondrial genome of Iris domestica emphasizing multichromosomal organization and repeat-mediated homologous recombination

in Plant Bioinformatics

Lizhi Ouyang
Xinyu Li
Ruili Wang
Yixuan Chen
Shuo Wang
Jianfang Wang
Yelin Tian

Frontiers in Plant Science

doi 10.3389/fpls.2024.1520033

2,758 views
1 citation

Original Research

Published on 20 Feb 2025

Rapid and accurate detection of peanut pod appearance quality based on lightweight and improved YOLOv5_SSE model

in Plant Bioinformatics

Zhixia Liu
Xilin Zhong
Chunyu Wang
Guozhen Wu
Fengyu He
Jing Wang
Dexu Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1494688

1,949 views
2 citations

Editorial

Published on 20 Feb 2025

Editorial: Omics in seed development: challenges and opportunities for improving of seed quality and yield in model and crop plants

in Plant Bioinformatics

Changye Yang
Zhaorong Hu
Raju Datla
Daoquan Xiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1568039

2,179 views
1 citation

Original Research

Published on 18 Feb 2025

Dynamic changes in the transcriptome of tropical region-originated king grasses in response to cold stress

in Plant Bioinformatics

Xianjun Lai
Junfeng Yan
Zihan Chen
Yizheng Zhang
Fan Luo
Guangze Cai
Lang Yan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1511466

2,015 views
1 citation

Original Research

Published on 18 Feb 2025

New insights into the transcription factor regulatory networks driving peel coloration under hormone induction analyzed by transcriptomics and metabolomics in tangor ‘Murcot’

in Plant Bioinformatics

Yang Chen
Lei Yang
Shuang Li
Min Wang
Jianjun Yu
Wenqin Bai
Lin Hong

Frontiers in Plant Science

doi 10.3389/fpls.2025.1526733

2,138 views
1 citation

Methods

Published on 17 Feb 2025

Applications of synchrotron light in seed research: an array of x-ray and infrared imaging methodologies

in Plant Bioinformatics

Paula Ashe
Kaiyang Tu
Jarvis A. Stobbs
James J. Dynes
Miranda Vu
Hamid Shaterian
Sateesh Kagale
Karen K. Tanino
Janitha P. D. Wanasundara
Sally Vail

Frontiers in Plant Science

doi 10.3389/fpls.2024.1395952

5,361 views
9 citations

Original Research

Published on 13 Feb 2025

Rapid and accurate classification of mung bean seeds based on HPMobileNet

in Plant Bioinformatics

Shaozhong Song
Zhenyang Chen
Helong Yu
Mingxuan Xue
Junling Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1474906

3,209 views
4 citations

798 articles

articles

Characterization of the NAC gene family in ‘Fengdan’ peony (Paeonia ostii) insights into the evolution and expression patterns under abiotic stresses and ABA treatment

Genome-wide identification, phylogenetic investigation and abiotic stress responses analysis of the PP2C gene family in litchi (Litchi chinensis Sonn.)

A method of rice panicle number counting based on improved CSRNet model

Comparative analysis of HKT genes in Ipomoea pes-caprae unveils conserved Na+/K+ symporter functions within the gene family

Assembly and analysis of the complete mitochondrial genome of Prunus davidiana (Rosaceae)

Characterizing the wheat (Triticum aestivum L.) phosphate transporter gene family and analyzing expression patterns in response to low phosphorus stress during the seedling stage

Phylogenetic analysis of nine Impatiens species from subgenus Clavicarpa and subgenus Impatiens (Sect. Impatiens and Sect. Racemosae) based on chloroplast genomes

De novo assembly and comparative analysis of cherry (Prunus subgenus Cerasus) mitogenomes

Genome-wide identification and expression analysis of the ADH gene family in Artemisia annua L. under UV-B stress

Identification of nuclear factor YA6 genes in sorghum and characterization of their involvement in drought tolerance

Identification of functional pathways and hub genes associated with the heterochronic development of sugarcane axillary buds and sett roots through multi-omics analysis

Genome-wide identification and expression analysis of C3H gene family in melon

StatFaRmer: cultivating insights with an advanced R shiny dashboard for digital phenotyping data analysis

The complete mitochondrial genome and phylogenetic analysis of Lotus corniculatus (Fabaceae, Papilionoideae)

Comprehensive genome-wide analysis of the GmFRIGIDA gene family in soybean: identification, characterization, and expression dynamics

Editorial: Precision exploration of plant germplasm resources: breakthroughs and applications in telomere-to-telomere (T2T) genomics

Variation analysis and comparison of leaf and fruit traits of triploid hybrid progeny in jujube

Comprehensive analysis of the mitochondrial genome of Iris domestica emphasizing multichromosomal organization and repeat-mediated homologous recombination

Rapid and accurate detection of peanut pod appearance quality based on lightweight and improved YOLOv5_SSE model

Editorial: Omics in seed development: challenges and opportunities for improving of seed quality and yield in model and crop plants

Dynamic changes in the transcriptome of tropical region-originated king grasses in response to cold stress

New insights into the transcription factor regulatory networks driving peel coloration under hormone induction analyzed by transcriptomics and metabolomics in tangor ‘Murcot’

Applications of synchrotron light in seed research: an array of x-ray and infrared imaging methodologies

Rapid and accurate classification of mung bean seeds based on HPMobileNet