Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 13 Nov 2024

Pan-genome wide identification and analysis of the SAMS gene family in sunflowers (Helianthus annuus L.) revealed their intraspecies diversity and potential roles in abiotic stress tolerance

in Functional and Applied Plant Genomics

Chun Zhang
Haoyu Li
Jiamin Yin
Zhibin Han
Xinqi Liu
Yang Chen

Frontiers in Plant Science

doi 10.3389/fpls.2024.1499024

2,925 views
2 citations

Data Report

Published on 11 Nov 2024

Chromosome-level assembly of the Clinopodium gracile genome

in Functional and Applied Plant Genomics

Yubang Gao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1489102

1,767 views

Original Research

Published on 07 Nov 2024

The maize gene ZmSBP17 encoding an SBP transcription factor confers osmotic resistance in transgenic Arabidopsis

in Functional and Applied Plant Genomics

Lifang Sun
Lijiao Wang
Jinping Niu
Wei Yang
Zhifang Li
Libin Liu
Shuren Gao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1483486

2,387 views
3 citations

Original Research

Published on 30 Oct 2024

Genome-wide association studies of bundle and single fiber length traits reveal the genetic basis of within-sample variation in upland cotton fiber length

in Functional and Applied Plant Genomics

Hee Jin Kim
Gregory N. Thyssen
Christopher D. Delhom
David D. Fang
Marina Naoumkina
Christopher B. Florane
Ping Li
Johnie N. Jenkins
Jack C. McCarty
Linghe Zeng

Frontiers in Plant Science

doi 10.3389/fpls.2024.1472675

2,739 views
4 citations

Original Research

Published on 25 Oct 2024

Comprehensive analysis of transcription factor binding sites and expression profiling of rice pathogenesis related genes (OsPR1)

in Functional and Applied Plant Genomics

Diksha Kumari
Bishun Deo Prasad
Padmanabh Dwivedi
Sangita Sahni
Mankesh Kumar
Saud Alamri
Muhammad Faheem Adil
Khaled A. Alakeel

Frontiers in Plant Science

doi 10.3389/fpls.2024.1463147

3,741 views
5 citations

Original Research

Published on 18 Oct 2024

Discovery of genes that positively affect biomass and stress associated traits in poplar

in Functional and Applied Plant Genomics

Tatyana Georgieva
Yordan Yordanov
Elena Yordanova
Md Rezaul Islam Khan
Kaiwen Lyu
Victor Busov

Frontiers in Plant Science

doi 10.3389/fpls.2024.1468905

1,779 views

Original Research

Published on 17 Oct 2024

Integratedly analyzed quantitative proteomics with transcriptomics to discover key genes via fg-1 non-heading mutant in the early heading stage of Chinese cabbage

in Functional and Applied Plant Genomics

Jingrui Li
Mi Fan
Xiaomeng Zhang
Liling Yang
Guangguang Hou
Lei Yang
Na Li
Shuxin Xuan
Jianjun Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1467006

1,984 views

Original Research

Published on 15 Oct 2024

Genome-wide association mapping identifies novel SNPs for root nodulation and agronomic traits in chickpea

in Functional and Applied Plant Genomics

B. S. Chandana
Rohit Kumar Mahto
Rajesh Kumar Singh
Aditi Bhandari
Gitanjali Tandon
K. K. Singh
Sunita Kushwah
Gera Roopa Lavanya
Mir Asif Iquebal
Neelu Jain

Frontiers in Plant Science

doi 10.3389/fpls.2024.1395938

4,220 views
3 citations

Opinion

Published on 15 Oct 2024

Strategies for RNA m6A modification application in crop improvement

in Functional and Applied Plant Genomics

Jun Tang
Xuemin Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1477240

2,744 views
6 citations

Original Research

Published on 10 Oct 2024

Gene expression signatures of mutualism and pathogenesis in flax roots

in Functional and Applied Plant Genomics

Isadora Louise Alves da Costa Ribeiro Quintans
Eric Vukicevich
Vasilis Kokkoris
Erica Packard
Dinesh Adhikary
Miranda M. Hart
Michael K. Deyholos

Frontiers in Plant Science

doi 10.3389/fpls.2024.1415082

2,207 views

Original Research

Published on 10 Oct 2024

Combined transcriptome and metabolome analysis revealed the molecular mechanisms of fruit skin coloration in pink strawberry

in Functional and Applied Plant Genomics

Wenfei Xiao
Aichun Liu
Wenguo Lai
Jianrong Wang
Xiaoyuan Li
Yan Zha
Bo Zhao
Xiaoyang Chen
Hong Yu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1486892

3,323 views
6 citations

Original Research

Published on 10 Oct 2024

Genome-wide analysis of WRKY gene family and the dynamic responses of key WRKY genes involved in cadmium stress in Brassica juncea

in Functional and Applied Plant Genomics

Shaocui Li
Qingqing Ji
Xia An
Changli Chen
Xiahong Luo
Tingting Liu
Lina Zou

Frontiers in Plant Science

doi 10.3389/fpls.2024.1465905

3,943 views
4 citations

Original Research

Published on 07 Oct 2024

UV-induced reactive oxygen species and transcriptional control of 3-deoxyanthocyanidin biosynthesis in black sorghum pericarp

in Functional and Applied Plant Genomics

Brooklyn Schumaker
Lauren Mortensen
Robert R. Klein
Sabyasachi Mandal
Linda Dykes
Nicholas Gladman
William L. Rooney
Byron Burson
Patricia E. Klein

Frontiers in Plant Science

doi 10.3389/fpls.2024.1451215

3,734 views
6 citations

Original Research

Published on 03 Oct 2024

The OsGAPC3 mutation significantly affects grain quality traits and improves the nutritional quality of rice

in Functional and Applied Plant Genomics

Bo Peng
Yan Liu
Xiaoyu Sun
Qiang Zhao
Jing Qiu
Xiayu Tian
Jing Peng
Zhiguo Zhang
Yujian Wang
Yaqin Huang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1470316

2,858 views
5 citations

Original Research

Published on 02 Oct 2024

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies

in Functional and Applied Plant Genomics

Marcel O. Berkner
Yong Jiang
Jochen C. Reif
Albert W. Schulthess

Frontiers in Plant Science

doi 10.3389/fpls.2024.1451749

2,448 views
7 citations

Original Research

Published on 01 Oct 2024

A comprehensive multivariate approach for GxE interaction analysis in early maturing rice varieties

in Functional and Applied Plant Genomics

Muhammad Fuad Anshori
Yunus Musa
Muh Farid
Muh Jayadi
Rusnadi Padjung
Kaimuddin Kaimuddin
Yi Cheng Huang
Madonna Casimero
Iris Bogayong
Willy Bayuardi Suwarno

Frontiers in Plant Science

doi 10.3389/fpls.2024.1462981

4,214 views
9 citations

Original Research

Published on 01 Oct 2024

Genome-wide association study reveals the genetic basis of rice resistance to three herbicides

in Functional and Applied Plant Genomics

Peizhou Xu
Yuhe Qin
Maosen Ma
Tengfei Liu
Fenhua Ruan
Le Xue
Jiying Cao
Guizong Xiao
Yun Chen
Hongyan Fu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1476829

3,396 views
2 citations

Original Research

Published on 27 Sep 2024

Identification of candidate genes and development of KASP markers for soybean shade-tolerance using GWAS

in Functional and Applied Plant Genomics

Qianru Jia
Shengyan Hu
Xihuan Li
Libin Wei
Qiong Wang
Wei Zhang
Hongmei Zhang
Xiaoqing Liu
Xin Chen
Xuejun Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1479536

3,197 views
5 citations

Original Research

Published on 26 Sep 2024

Comprehensive transcriptome analysis of AP2/ERFs in Osmanthus fragrans reveals the role of OfERF017-mediated organic acid metabolism pathway in flower senescence

in Functional and Applied Plant Genomics

Jing-Jing Zou
Jun Zhang
Xiaoqian Wang
Hui Xia
Xiangling Zeng
Xuan Cai
Jie Yang
Jin Zeng
Zeqing Li
Guifu Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1467232

2,540 views
4 citations

Original Research

Published on 26 Sep 2024

Genome-wide identification and tissue expression pattern analysis of TPS gene family in soybean (Glycine max)

in Functional and Applied Plant Genomics

Huanli Li
Xiaoling Zhang
Qinli Yang
Xiaoxia Shangguan
Yanbin Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1487092

3,727 views
3 citations

Original Research

Published on 17 Sep 2024

Overexpression of the Liriodendron tulipifera TPS32 gene in tobacco enhances terpenoid compounds synthesis

in Functional and Applied Plant Genomics

Junpeng Wu
Manli Bu
Yaxian Zong
Zhonghua Tu
Yanli Cheng
Huogen Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1445103

2,584 views

Original Research

Published on 13 Sep 2024

Genome wide association study reveals new genes for resistance to striped stem borer in rice (Oryza sativa L.)

in Functional and Applied Plant Genomics

Xing Xiang
Shuhua Liu
Yuewen He
Deqiang Li
Andrews Danso Ofori
Abdul Ghani Kandhro
Tengda Zheng
Xiaoqun Yi
Ping Li
Fu Huang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1466857

3,461 views
1 citation

Original Research

Published on 09 Sep 2024

Explainable artificial intelligence for genotype-to-phenotype prediction in plant breeding: a case study with a dataset from an almond germplasm collection

in Functional and Applied Plant Genomics

Pierfrancesco Novielli
Donato Romano
Stefano Pavan
Pasquale Losciale
Anna Maria Stellacci
Domenico Diacono
Roberto Bellotti
Sabina Tangaro

Frontiers in Plant Science

doi 10.3389/fpls.2024.1434229

7,030 views
20 citations

Original Research

Published on 09 Sep 2024

Genomic prediction of yield-related traits and genome-based establishment of heterotic pattern in maize hybrid breeding of Southwest China

in Functional and Applied Plant Genomics

Yong Xiang
Chao Xia
Lujiang Li
Rujun Wei
Tingzhao Rong
Hailan Liu
Hai Lan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1441555

7,691 views
11 citations

654 articles

articles

Pan-genome wide identification and analysis of the SAMS gene family in sunflowers (Helianthus annuus L.) revealed their intraspecies diversity and potential roles in abiotic stress tolerance

Chromosome-level assembly of the Clinopodium gracile genome

The maize gene ZmSBP17 encoding an SBP transcription factor confers osmotic resistance in transgenic Arabidopsis

Genome-wide association studies of bundle and single fiber length traits reveal the genetic basis of within-sample variation in upland cotton fiber length

Comprehensive analysis of transcription factor binding sites and expression profiling of rice pathogenesis related genes (OsPR1)

Discovery of genes that positively affect biomass and stress associated traits in poplar

Integratedly analyzed quantitative proteomics with transcriptomics to discover key genes via fg-1 non-heading mutant in the early heading stage of Chinese cabbage

Genome-wide association mapping identifies novel SNPs for root nodulation and agronomic traits in chickpea

Strategies for RNA m6A modification application in crop improvement

Gene expression signatures of mutualism and pathogenesis in flax roots

Combined transcriptome and metabolome analysis revealed the molecular mechanisms of fruit skin coloration in pink strawberry

Genome-wide analysis of WRKY gene family and the dynamic responses of key WRKY genes involved in cadmium stress in Brassica juncea

UV-induced reactive oxygen species and transcriptional control of 3-deoxyanthocyanidin biosynthesis in black sorghum pericarp

The OsGAPC3 mutation significantly affects grain quality traits and improves the nutritional quality of rice

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies

A comprehensive multivariate approach for GxE interaction analysis in early maturing rice varieties

Genome-wide association study reveals the genetic basis of rice resistance to three herbicides

Identification of candidate genes and development of KASP markers for soybean shade-tolerance using GWAS

Comprehensive transcriptome analysis of AP2/ERFs in Osmanthus fragrans reveals the role of OfERF017-mediated organic acid metabolism pathway in flower senescence

Genome-wide identification and tissue expression pattern analysis of TPS gene family in soybean (Glycine max)

Overexpression of the Liriodendron tulipifera TPS32 gene in tobacco enhances terpenoid compounds synthesis

Genome wide association study reveals new genes for resistance to striped stem borer in rice (Oryza sativa L.)

Explainable artificial intelligence for genotype-to-phenotype prediction in plant breeding: a case study with a dataset from an almond germplasm collection

Genomic prediction of yield-related traits and genome-based establishment of heterotic pattern in maize hybrid breeding of Southwest China