Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 04 Sep 2025

Uncovering dormancy stage predictors in sweet cherry through DNA methylation and machine learning integration

in Functional and Applied Plant Genomics

Gabriela M. Saavedra
Poliana Povea
Claudio Urra
José Gaete-Loyola
Carlos Maldonado
Andrea Miyasaka Almeida

Frontiers in Plant Science

doi 10.3389/fpls.2025.1659345

380 views

Original Research

Accepted on 01 Sep 2025

Transcriptome analysis of rice resistant and susceptible near-isogenic lines in response to infection by Xanthomonas oryzae pv. oryzicola

in Functional and Applied Plant Genomics

Hui Zhang
Min Tang
Yao Wan
Ziqiu Deng
Xuemei Qin
Jieyi Huang
Xuan Wei
Rongbai Li
Fang Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1610315

250 views

Data Report

Published on 01 Sep 2025

Complete plastome of Elaeodendron glaucum (Rottb.) Pers.: genomic resources for Celastraceae systematics

in Functional and Applied Plant Genomics

Dipta Sumeru Rinandio
Iin Pertiwi A. Husaini
Mahat Magandhi
Irfan Martiansyah
Tri Yuni Indah Wulansari
Julisasi Tri Hadiah
Deden Girmansyah
Nanda Utami
Rugayah
Arifin Surya Dwipa Irsyam

Frontiers in Plant Science

doi 10.3389/fpls.2025.1649473

505 views

Data Report

Accepted on 29 Aug 2025

Sequencing and characterizing the complete chloroplast genome of Ardisia silvestris Pit., a potential medicinal plant in Asia

in Functional and Applied Plant Genomics

Nhat Nam Nguyen
Hoang Dang Khoa Do

Frontiers in Plant Science

doi 10.3389/fpls.2025.1627578

422 views

Original Research

Accepted on 29 Aug 2025

Identification and evolutionary analysis of NAC transcription factors in Eriobotrya japonica: implications for sugar-acid regulatory networks during fruit development

in Functional and Applied Plant Genomics

Boping Wu
Huiling Zhang
Meng Yang
Chengyang Ye
Minghui Chen
Hailing Gu
Xiurun Fan
Junwei Chen
Kai Xu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1671017

407 views

Original Research

Accepted on 29 Aug 2025

Genome-Wide Identification and Expression Analysis of CCoAOMT Genes in Capsicum annuum L. Under Drought Stress

in Functional and Applied Plant Genomics

Wu Di
Chen Lu
Liwei Bai
Xi Yan
Wei Lai
Xiaoming Zhang
Lei He
Jianwen He

Frontiers in Plant Science

doi 10.3389/fpls.2025.1654390

208 views

Original Research

Accepted on 25 Aug 2025

Genome-wide Identification of the OVATE Gene Family of Proteins in Soybean and Expression Profiling under Salt Stress

in Functional and Applied Plant Genomics

Fan Zhan
Yi Wang
Lili Zhang
Yuehua Yu
Zhi-yong Ni

Frontiers in Plant Science

doi 10.3389/fpls.2025.1682513

648 views

Original Research

Published on 21 Aug 2025

Characterization and expression analysis of transcription factors in Spartina alterniflora unveil their critical roles in salt stress resistance

in Functional and Applied Plant Genomics

Yuanyuan Jiang
Shoukun Chen
Shuqiang Gao
Jiahui Geng
Qin Shu
Shang Gao
Huihui Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1592211

943 views

Original Research

Published on 20 Aug 2025

Identification and expression analysis of the BnE2F/DP gene family in Brassica napus

in Functional and Applied Plant Genomics

Min Shen
Lijuan Wei
Chun Fu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1641897

686 views

Original Research

Published on 20 Aug 2025

Receptor-like kinase SlRLK-like positively regulates sugar accumulation and fruit ripening in tomato

in Functional and Applied Plant Genomics

Jiaqi Sun
Xinsheng Zhang
Miaofei Yang
Xin Liu
Jing Jiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1649082

704 views

Original Research

Published on 19 Aug 2025

Multi-trait ridge regression BLUP with de novo GWAS improves genomic prediction for haploid induction ability of haploid inducers in maize

in Functional and Applied Plant Genomics

Yu-Ru Chen
Ursula K. Frei
Thomas Lübberstedt

Frontiers in Plant Science

doi 10.3389/fpls.2025.1614457

783 views
1 citation

Original Research

Published on 18 Aug 2025

Comparative analysis of complete chloroplast genomes of Flemingia prostrata and Flemingia macrophylla, two commonly used medicinal plants in southern China

in Functional and Applied Plant Genomics

Fan Wei
Yang Lin
Danfeng Tang
Ying Liang
Shuangshuang Qin

Frontiers in Plant Science

doi 10.3389/fpls.2025.1591427

623 views

Original Research

Published on 14 Aug 2025

Metagenomic analysis of the effects of plant- and yeast-based formulations on the grapevine leaf microbiome of cv. ‘Touriga Franca’

in Functional and Applied Plant Genomics

Eliana Monteiro
Paula Baptista
Sofia Silva
Márcia Carvalho
Radek Bragança
Kieran J. Guinan
Neerakkal Sujeeth
Isabel Cortez
Berta Gonçalves
Isaura Castro

Frontiers in Plant Science

doi 10.3389/fpls.2025.1637143

731 views

Original Research

Accepted on 12 Aug 2025

Genome-wide Identification, Expression and Functional analysis of Glutathione S-transferase Family Members in Quercus dentata under Heavy Metal Stresses

in Functional and Applied Plant Genomics

Jingjing Sha
Xiangyue Wu
Ao Shen
Xin Pang
Wenbo Wang
Pingsheng Leng
Zenghui Hu
Yazhou Zhao
Xiangfeng He

Frontiers in Plant Science

doi 10.3389/fpls.2025.1641553

202 views

Original Research

Accepted on 11 Aug 2025

Comparative assessment of species identification methods for European Salicornia sources: A multifaceted approach employing morphology, nuclear DNA content, phylogenetic markers, RNA topology, and SSR fingerprinting

in Functional and Applied Plant Genomics

Andre Fussy
Samuele Austoni
Traud Winkelmann
Jutta Papenbrock

Frontiers in Plant Science

doi 10.3389/fpls.2025.1666009

174 views

Original Research

Accepted on 11 Aug 2025

MsDAD1 acts as a heat-induced "senescence brake" in alfalfa

in Functional and Applied Plant Genomics

Yuguang Song
Xinying Guo
Linyao Wang
Yingying Zheng
Ting Li
Wei Dong

Frontiers in Plant Science

doi 10.3389/fpls.2025.1664465

145 views