Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Accepted on 18 Jul 2025

Multi-trait ridge regression BLUP with de novo GWAS improves genomic prediction for haploid induction ability of haploid inducers in maize

in Functional and Applied Plant Genomics

Yu-Ru Chen
Ursula K Frei
Thomas Lübberstedt

Frontiers in Plant Science

doi 10.3389/fpls.2025.1614457

Editorial

Published on 18 Jul 2025

Editorial: Omics applications in agriculture systems: unveiling functionality and practicality

in Functional and Applied Plant Genomics

Dinesh Adhikary
Joann Mudge
Thiruvarangan Ramaraj

Frontiers in Plant Science

doi 10.3389/fpls.2025.1642175

292 views

Original Research

Published on 18 Jul 2025

Identification of two new GRAS transcription factors and expression analysis of these genes in Chenopodium quinoa

in Functional and Applied Plant Genomics

Xinwen Hou
Shuwei Wang
Shanmin Zhou
Weizhong Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1579338

270 views

Original Research

Published on 17 Jul 2025

Gh_FBL43 regulates the resistance of Gossypium hirsutum to Verticillium wilt through jasmonic acid and flavonoid-related pathways

in Functional and Applied Plant Genomics

Jieyin Zhao
Xuening Su
Wenju Gao
Tingwei Wang
Yuxiang Wang
Quanjia Chen
Yanying Qu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1620947

516 views

Original Research

Published on 17 Jul 2025

Integrated transcriptome, GWAS, and metabolome revealed the mechanism of seed germination in sorghum

in Functional and Applied Plant Genomics

Lan Ju
Ruizhen Liu
Xiaoqiang Cheng
Yao Wang
Xin Lv
Jianqiang Chu
Hao Niu
Haisheng Yan
Yubin Wang
Fangfang Fan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1601899

383 views

Original Research

Published on 16 Jul 2025

SaGP: identifying plant saline-alkali tolerance genes based on machine learning techniques

in Functional and Applied Plant Genomics

Baixue Qiao
Wentao Gao
Xudong Zhang
Min Du
Shuda Wang
Xuanrui Liu
Shaozi Pang
Chunxue Yang
Jiang Wang
Yuming Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629794

352 views

Original Research

Accepted on 15 Jul 2025

Genome-wide identification and functional characterization of oleosin genes in peanut (Arachis hypogaea L.)

in Functional and Applied Plant Genomics

Mei Ling Hu
Jie Wu
Xiao Meng Xue
Li Huang
Nian Liu
Li Ying Yan
Yu Ning Chen
Xin Wang
Yan Ping Kang
Zhi Hui Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1623513

Original Research

Accepted on 15 Jul 2025

Receptor-like kinase SlRLK-like positively regulates sugar accumulation and fruit ripening in tomato

in Functional and Applied Plant Genomics

Jiaqi Sun
Xinsheng Zhang
Miaofei Yang
Xin Liu
Jing Jiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1649082

103 views

Review

Accepted on 11 Jul 2025

Beyond the genome: The role of functional markers in contemporary plant breeding

in Functional and Applied Plant Genomics

Tae-Chun Park
Pransiskudura Chamara
Thomas Lubberstedt
Paul Marvin Scott

Frontiers in Plant Science

doi 10.3389/fpls.2025.1637299

133 views

Editorial

Published on 11 Jul 2025

Editorial: Genomics-driven advances in crop productivity and stress resilience

in Functional and Applied Plant Genomics

Parimalan Rangan
Robert Henry
Ambika Baldev Gaikwad

Frontiers in Plant Science

doi 10.3389/fpls.2025.1645714

430 views

Correction

Accepted on 10 Jul 2025

Correction: Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica

in Functional and Applied Plant Genomics

Shihui Zhang
Yuyan Zhang
Sheng Luo
Jie Gao
Haiyan Hu
Jinping Liu
Wenqiang Wu
Jian Wang
Xiaolong Huang
Hanggui Lai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1658310

192 views

Original Research

Published on 02 Jul 2025

Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species

in Functional and Applied Plant Genomics

Rongxin Li
Bo Wang
Suqin Xiao
Ling Chen
Fuyou Yin
Jinlu Li
Cong Jiang
Dunyu Zhang
Qiaofang Zhong
Yun Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1555104

660 views

Original Research

Published on 02 Jul 2025

Unraveling yield heterosis in Chinese cabbage hybrid by comparative transcriptomic analysis and LHCB1 gene function analysis

in Functional and Applied Plant Genomics

Ruihua Wang
Min Han
Taili Han
Ligong Xu
Yuanyuan Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1627259

669 views

Original Research

Published on 01 Jul 2025

Integrated morphophysiological, transcriptomic, and metabolomic data uncover the molecular mechanism of environmental adaptation of Zanthoxylum armatum with different latitudinal gradients

in Functional and Applied Plant Genomics

Yuan Guo
Xueqian Fu
Chong Sun
Yifei Deng
Han Liu
Long Tong
Mi Kuang
Ning Tang
Wenying Yang
Xia Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1622956

712 views

Original Research

Accepted on 30 Jun 2025

GWAS Analysis of Fusarium Head Blight Resistance in a Nordic-Baltic Spring Wheat Panel

in Functional and Applied Plant Genomics

Shayan Syed
Andrius Aleliūnas
Rita Armoniene
Gintaras Brazauskas
Andrii Gorash

Frontiers in Plant Science

doi 10.3389/fpls.2025.1604296

150 views

Original Research

Accepted on 30 Jun 2025

Association mapping and candidate gene identification for drought tolerance in sorghum

in Functional and Applied Plant Genomics

Huiting Min
Kang Wang
Tiantian Wang
Xinxiu Cheng
Ephrem Habyarimana
Yongfei Wang
Die Hu
Yi-Hong Wang
Lihua Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629615

234 views