Evolutionary Adaptations of Plant Genes: A Comprehensive Study of Phylogenomics, Epigenetic Changes, and Protein Dynamics

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ORIGINAL RESEARCH

Published on 14 Nov 2025

Genome-wide comprehensive analysis the molecular phylogenetic evolution, functional divergence and tissue-specific expression of GH3 gene family in Salvia miltiorrhiza, Arabidopsis thaliana, and Oryza sativa

Bin Wang
Min Li
Jun Chen
Longtao Chen

doi 10.3389/fpls.2025.1644853

438 views

ORIGINAL RESEARCH

Published on 14 Nov 2025

Identification of chalcone isomerase family genes and roles of DnCHI1 in flavonoid metabolism in Dendrobium nobile

Ling-ling Chang
Yu-xin Zhou
Ling-rong Wang
Lei Liu
Zhen-jian Li

doi 10.3389/fpls.2025.1687738

626 views

ORIGINAL RESEARCH

Accepted on 03 Oct 2025

Genome-wide identification and characterization of DNA methyltransferases and demethylases in Siraitia grosvenorii

Yimei Zang
Chongnan Wang
Jiaxian Su
Lei Xie
Changming Mo
Zuliang Luo
Xiaojun Ma

274 views

ORIGINAL RESEARCH

Published on 18 Sep 2025

Genome-wide analysis of bHLH transcription factor family reveals their involvement in kernel development and biotic stress responses in Chinese chestnut

Rongchen Li
Liyun Huang
Xiaolu Huang
Jianming Liao
Xiaojuan Wei
Junji Li
Guangyu Zeng
Zhuogong Shi
Jingzheng Zhang
Zhiheng Zhao

doi 10.3389/fpls.2025.1627760

1,559 views

ORIGINAL RESEARCH

Published on 08 Sep 2025

Genome-wide analysis of RWP-RK transcription factor family reveals its roles in nitrogen response in rice (Oryza sativa)

Mei Du
Ziwen Guo
Siyu Gong
Liangwei Xu

doi 10.3389/fpls.2025.1597029

1,467 views

ORIGINAL RESEARCH

Published on 21 Aug 2025

Characterization and expression analysis of transcription factors in Spartina alterniflora unveil their critical roles in salt stress resistance

Yuanyuan Jiang
Shoukun Chen
Shuqiang Gao
Jiahui Geng
Qin Shu
Shang Gao
Huihui Li

doi 10.3389/fpls.2025.1592211

1,449 views

ORIGINAL RESEARCH

Published on 04 Aug 2025

Genome-wide identification and comprehensive characterization of the ADF gene family in Triticum monococcum L. subsp. aegilopoides with insights into structure, evolution and cold stress response

Xin Liu
Minghu Zhang
Jian Su
Lei Wu
Mang Shen
Qi Wang
Yamei Zhuang
Lianquan Zhang
Haosheng Li
Gang Chen

doi 10.3389/fpls.2025.1649202

1,623 views

ORIGINAL RESEARCH

Published on 18 Jul 2025

Identification of two new GRAS transcription factors and expression analysis of these genes in Chenopodium quinoa

Xinwen Hou
Shuwei Wang
Shanmin Zhou
Weizhong Liu

doi 10.3389/fpls.2025.1579338

1,378 views

ORIGINAL RESEARCH

Published on 02 Jul 2025

Transcriptomic exploration yields novel perspectives on the regulatory network underlying trichome initiation in Gossypium arboreum hypocotyl

Yuxing Xie
Luying Yang
Zewei Zhao
Mingquan Ding
Yuefen Cao
Xin Hu
Junkang Rong

doi 10.3389/fpls.2025.1604186

1,243 views

ORIGINAL RESEARCH

Published on 02 Jul 2025

Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species

Rongxin Li
Bo Wang
Suqin Xiao
Ling Chen
Fuyou Yin
Jinlu Li
Cong Jiang
Dunyu Zhang
Qiaofang Zhong
3 more
Li Liu

doi 10.3389/fpls.2025.1555104

1,131 views

ORIGINAL RESEARCH

Published on 30 Jun 2025

The Evolution and expression analysis of USP gene family in Solanum

Ruiqiang Xu
Zhongyu Wang
Zhaolong Chen
Zepeng Wang
Qingyuan Meng
Ning Li
Yong Qin

doi 10.3389/fpls.2025.1546640

1,932 views

ORIGINAL RESEARCH

Published on 30 Jun 2025

Identification and functional analysis of AvLACS genes unveils their role in lipid homeostasis and waterlogging tolerance in kiwifruit (Actinidia valvata Dunn)

Meijuan Zhang
Kaiyu Ye
Jianyou Gao
Shibiao Liu
Ruonan Liu
Yuexing Chen
Qian Zhao
Yushan Lei
Jiewei Li
1 more
Faming Wang

doi 10.3389/fpls.2025.1580003

1,485 views

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Frontiers in Plant Science

Functional and Applied Plant Genomics
Plant Development and EvoDevo
Plant Bioinformatics

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Articles

Genome-wide comprehensive analysis the molecular phylogenetic evolution, functional divergence and tissue-specific expression of GH3 gene family in Salvia miltiorrhiza, Arabidopsis thaliana, and Oryza sativa

Identification of chalcone isomerase family genes and roles of DnCHI1 in flavonoid metabolism in Dendrobium nobile

Genome-wide identification and characterization of DNA methyltransferases and demethylases in Siraitia grosvenorii

Genome-wide analysis of bHLH transcription factor family reveals their involvement in kernel development and biotic stress responses in Chinese chestnut

Genome-wide analysis of RWP-RK transcription factor family reveals its roles in nitrogen response in rice (Oryza sativa)

Characterization and expression analysis of transcription factors in Spartina alterniflora unveil their critical roles in salt stress resistance

Genome-wide identification and comprehensive characterization of the ADF gene family in Triticum monococcum L. subsp. aegilopoides with insights into structure, evolution and cold stress response

Identification of two new GRAS transcription factors and expression analysis of these genes in Chenopodium quinoa

Transcriptomic exploration yields novel perspectives on the regulatory network underlying trichome initiation in Gossypium arboreum hypocotyl

Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species

The Evolution and expression analysis of USP gene family in Solanum

Identification and functional analysis of AvLACS genes unveils their role in lipid homeostasis and waterlogging tolerance in kiwifruit (Actinidia valvata Dunn)

Frontiers in Plant Science

Functional and Applied Plant Genomics

Plant Development and EvoDevo

Plant Bioinformatics