Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 24 Apr 2025

Identification and characterization of Csa-miR159s and their expression patterns under different abiotic stresses in cucumber (Cucumis sativus L.)

in Functional and Applied Plant Genomics

Zhenxiang Zhao
Wenhong Ao
Weirong Luo
Yaoguang Sun
Vijay Yadav Tokala
Junjun Liu
Shenshen Zhi
Yongdong Sun

Frontiers in Plant Science

doi 10.3389/fpls.2025.1518406

1,794 views

Original Research

Published on 17 Apr 2025

Identification of novel candidate genes for regulating oil composition in soybean seeds under environmental stresses

in Functional and Applied Plant Genomics

Patrick Bewick
Peter Forstner
Bo Zhang
Eva Collakova

Frontiers in Plant Science

doi 10.3389/fpls.2025.1572319

2,184 views

Original Research

Published on 16 Apr 2025

Genotyping and diversity analysis of local avocado landraces in La Palma, Canary Islands

in Functional and Applied Plant Genomics

Verónica Pérez
Nerea Larranaga
M. Librada Alcaraz
J. Ignacio Hormaza

Frontiers in Plant Science

doi 10.3389/fpls.2025.1572870

2,926 views

Original Research

Published on 15 Apr 2025

Consensus genomic regions and key genes for biotic, abiotic and key nutritional traits identified using meta- QTL analysis in peanut

in Functional and Applied Plant Genomics

Aakash Sahu
Sagar Krushnaji Rangari
Yogesh Dashrath Naik
Anjali Jyotish
Manish K. Pandey
Rajeev K. Varshney
Mahendar Thudi
Somashekhar M. Punnuri

Frontiers in Plant Science

doi 10.3389/fpls.2025.1539641

2,549 views
2 citations

Original Research

Published on 14 Apr 2025

Uncovering the breeding contribution of transposable elements from landraces to improved varieties through pan-genome-wide analysis in rice

in Functional and Applied Plant Genomics

Xiaoxia Li
Xiaofan Dai
Huiying He
Wu Chen
Qian Qian
Lianguang Shang
Longbiao Guo
Wenchuang He

Frontiers in Plant Science

doi 10.3389/fpls.2025.1573546

2,262 views

Original Research

Published on 04 Apr 2025

GWAS and WGCNA analysis uncover candidate genes associated with drought in Brassica juncea L.

in Functional and Applied Plant Genomics

Yusong Zhang
Xiaoyan Yuan
Yunyun Zhang
Yanqing Luo
Kaiqin Zhao
Feng Zu
Zhengshu Tian
Jinfeng Li
Lifan Zhang
Xiaoying He

Frontiers in Plant Science

doi 10.3389/fpls.2025.1551804

2,641 views
2 citations

Original Research

Published on 01 Apr 2025

Screening and functional characterization of salt-tolerant NAC gene family members in Medicago sativa L

in Functional and Applied Plant Genomics

Zhiguang Li
Qianqian Yu
Yue Ma
Fuhong Miao
Lichao Ma
Shuo Li
Huajie Zhang
Zeng-Yu Wang
Guofeng Yang
Kunlong Su

Frontiers in Plant Science

doi 10.3389/fpls.2025.1461735

1,917 views
1 citation

Original Research

Published on 28 Mar 2025

Evolutionary landscape of plant chalcone isomerase-fold gene families

in Functional and Applied Plant Genomics

Kai-yong Luo
Shi-ping Wang
Ling Yang
Sen-lin Luo
Jia Cheng
Yang Dong
Ya Ning
Wei-bin Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1559547

3,196 views
2 citations

Original Research

Published on 27 Mar 2025

Peanut leaf transcriptomic dynamics reveals insights into the acclimation response to elevated carbon dioxide under semiarid conditions

in Functional and Applied Plant Genomics

Haydee Laza
Bishwoyog Bhattarai
Venugopal Mendu
Mark D. Burow
Yves Emendack
Jacobo Sanchez
Aarti Gupta
Mostafa Abdelrahman
Lam-Son Phan Tran
David T. Tissue

Frontiers in Plant Science

doi 10.3389/fpls.2024.1407574

2,163 views

Original Research

Published on 26 Mar 2025

Comprehensive genome analysis of Streptomyces caeruleatus S14 isolated from rice rhizosphere

in Functional and Applied Plant Genomics

Sucharita Mohapatra
S. R. Prabhukarthikeyan
Gayatri Biswal
Mihira Kumara Mishra
Soumya Shephalika Dash
Gyanisha Nayak
U. Keerthana
C. Parameswaran
P. Panneerselvam
S. D. Mohapatra

Frontiers in Plant Science

doi 10.3389/fpls.2025.1526700

2,310 views
1 citation

Original Research

Published on 26 Mar 2025

Phenotypic adaptation and genomic variation of Kandelia obovata associated with its northern introduction along southeastern coast of China

in Functional and Applied Plant Genomics

Jiaqi Zhang
Sheng Ouyang
Xingxing Cai
Sheng Yang
Qiuxia Chen
Ji Yang
Zhiping Song
Wenju Zhang
Yuguo Wang
Yan Zhu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1512620

1,430 views

Original Research

Published on 12 Mar 2025

Synergy of osmotic adjustment and antioxidant activity in Catalpa bungei: alleviating persistent drought stress from SL to NSL

in Functional and Applied Plant Genomics

Xiaochi Yu
Junhui Wang
Wenjun Ma
Fei Yi
Peng Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1536795

1,294 views
3 citations

Original Research

Published on 07 Mar 2025

Profiling of rhizosphere-associated microbial communities in North Alabama soils infested with varied levels of reniform nematodes

in Functional and Applied Plant Genomics

Sowndarya Karapareddy
Varsha C. Anche
Sowjanya R. Tamatamu
Madhusudhana R. Janga
Kathy Lawrence
Leopold M. Nyochembeng
Antonette Todd
Lloyd T. Walker
Venkateswara R. Sripathi

Frontiers in Plant Science

doi 10.3389/fpls.2025.1521579

2,199 views
3 citations

Data Report

Published on 05 Mar 2025

Chromosome-level assembly of the Isodon lophanthoides genome

in Functional and Applied Plant Genomics

Yubang Gao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1528404

1,525 views

Data Report

Published on 04 Mar 2025

Genetic diversity of Hippophae rhamnoides varieties with different fruit characteristics based on whole-genome sequencing

in Functional and Applied Plant Genomics

Nataliya V. Melnikova
Alexander A. Arkhipov
Yury A. Zubarev
Roman O. Novakovskiy
Anastasia A. Turba
Elena N. Pushkova
Daiana A. Zhernova
Anna S. Mazina
Ekaterina M. Dvorianinova
Elizaveta A. Sigova

Frontiers in Plant Science

doi 10.3389/fpls.2025.1542552

2,533 views
4 citations

Original Research

Published on 04 Mar 2025

Single-cell RNA sequencing of shoot apex reveals the mechanism of cyclin regulating cell division via auxin signaling pathway in Populus alba

in Functional and Applied Plant Genomics

Jing-hui Liang
Zhao-qun Wu
Yue-Xuan Zhang
Ye-Bo Yang
Shi-Yi Wang
Meng-Yu Gai
Yu-Wen Wang
Xiu-Xing Zhang
Jing Xue
Bo-Hao Duan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1555388

2,591 views
2 citations

Original Research

Published on 28 Feb 2025

Transcriptomic analysis of two Chinese wheat landraces with contrasting Fusarium head blight resistance reveals miRNA-mediated defense mechanisms

in Functional and Applied Plant Genomics

Lijuan Wu
Junqiang Wang
Shian Shen
Zaijun Yang
Xinkun Hu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1537605

2,243 views
2 citations

Original Research

Published on 26 Feb 2025

Genome-wide analysis of OPR family genes in Vitis vinifera and the role of VvOPR1 in copper, zinc tolerance

in Functional and Applied Plant Genomics

Shuang-Hong You
Yuan-Ping Chen
Wen-Jing Shi
Xue Li
Zheng Wu
Quan-Hong Yao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1509472

1,758 views

Original Research

Published on 26 Feb 2025

Integrated transcriptome and metabolome analyses reveals the mechanisms of function loss of Lr29 leaf rust resistance gene at high temperatures in wheat

in Functional and Applied Plant Genomics

Liwen Wang
Yang Yu
Hang Li
Mingzhu Lu
Shubo Cao
Ziqi Li
Haoyuan Song
Laszlo Purnhauser
Jinlong Li
Jiajie Wu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1537921

2,160 views

Original Research

Published on 20 Feb 2025

Transcriptomic analysis of early stages of ‘Candidatus Liberibacter asiaticus’ infection in susceptible and resistant species after inoculation by Diaphorina citri feeding on young shoots

in Functional and Applied Plant Genomics

Mônica N. Alves
Juan Cifuentes-Arenas
Regina Niñoles
Laudecir Lemos Raiol-Junior
Everton Carvalho
Isabel Quirós-Rodriguez
Jesus A. Ferro
Concetta Licciardello
Berta Alquezar
Lourdes Carmona

Frontiers in Plant Science

doi 10.3389/fpls.2025.1502953

2,469 views
4 citations

Review

Published on 19 Feb 2025

Recent advances in understanding the mechanisms of plant cadmium accumulation as affected by grafting in vegetable production

in Functional and Applied Plant Genomics

Ruimin Zhang
Youzhou Zhu
Hong Li
Na Sun

Frontiers in Plant Science

doi 10.3389/fpls.2025.1526041

2,238 views
3 citations

Original Research

Published on 18 Feb 2025

AoMYB114 transcription factor regulates anthocyanin biosynthesis in the epidermis of tender asparagus stems

in Functional and Applied Plant Genomics

Yanwen Li
Mengyao Li
Zheng Guo
Junting Liu
Peiran Chen
Wei Lu
Chengyao Jiang
Jiachang Xiao
Fengyun Lei
Yangxia Zheng

Frontiers in Plant Science

doi 10.3389/fpls.2025.1531574

1,612 views

Original Research

Published on 18 Feb 2025

TAL-SRX: an intelligent typing evaluation method for KASP primers based on multi-model fusion

in Functional and Applied Plant Genomics

Xiaojing Chen
Jingchao Fan
Shen Yan
Longyu Huang
Guomin Zhou
Jianhua Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1539068

1,383 views

Original Research

Published on 17 Feb 2025

Validation of stay-green and stem reserve mobilization QTLs: physiological and gene expression approach

in Functional and Applied Plant Genomics

Sukumar Taria
Ajay Arora
Sudhir Kumar
Hari Krishna
Shashi Meena
Biswabiplab Singh
Animireddy China Malakondaiah
Kousalya S.
Jasdeep Chatrath Padaria
Pradeep Kumar Singh

Frontiers in Plant Science

doi 10.3389/fpls.2025.1541944

1,947 views

623 articles

articles

Identification and characterization of Csa-miR159s and their expression patterns under different abiotic stresses in cucumber (Cucumis sativus L.)

Identification of novel candidate genes for regulating oil composition in soybean seeds under environmental stresses

Genotyping and diversity analysis of local avocado landraces in La Palma, Canary Islands

Consensus genomic regions and key genes for biotic, abiotic and key nutritional traits identified using meta- QTL analysis in peanut

Uncovering the breeding contribution of transposable elements from landraces to improved varieties through pan-genome-wide analysis in rice

GWAS and WGCNA analysis uncover candidate genes associated with drought in Brassica juncea L.

Screening and functional characterization of salt-tolerant NAC gene family members in Medicago sativa L

Evolutionary landscape of plant chalcone isomerase-fold gene families

Peanut leaf transcriptomic dynamics reveals insights into the acclimation response to elevated carbon dioxide under semiarid conditions

Comprehensive genome analysis of Streptomyces caeruleatus S14 isolated from rice rhizosphere

Phenotypic adaptation and genomic variation of Kandelia obovata associated with its northern introduction along southeastern coast of China

Synergy of osmotic adjustment and antioxidant activity in Catalpa bungei: alleviating persistent drought stress from SL to NSL

Profiling of rhizosphere-associated microbial communities in North Alabama soils infested with varied levels of reniform nematodes

Chromosome-level assembly of the Isodon lophanthoides genome

Genetic diversity of Hippophae rhamnoides varieties with different fruit characteristics based on whole-genome sequencing

Single-cell RNA sequencing of shoot apex reveals the mechanism of cyclin regulating cell division via auxin signaling pathway in Populus alba

Transcriptomic analysis of two Chinese wheat landraces with contrasting Fusarium head blight resistance reveals miRNA-mediated defense mechanisms

Genome-wide analysis of OPR family genes in Vitis vinifera and the role of VvOPR1 in copper, zinc tolerance

Integrated transcriptome and metabolome analyses reveals the mechanisms of function loss of Lr29 leaf rust resistance gene at high temperatures in wheat

Transcriptomic analysis of early stages of ‘Candidatus Liberibacter asiaticus’ infection in susceptible and resistant species after inoculation by Diaphorina citri feeding on young shoots

Recent advances in understanding the mechanisms of plant cadmium accumulation as affected by grafting in vegetable production

AoMYB114 transcription factor regulates anthocyanin biosynthesis in the epidermis of tender asparagus stems

TAL-SRX: an intelligent typing evaluation method for KASP primers based on multi-model fusion

Validation of stay-green and stem reserve mobilization QTLs: physiological and gene expression approach